HEADER PROTEIN FIBRIL 24-JAN-08 2RNM TITLE STRUCTURE OF THE HET-S(218-289) PRION IN ITS AMYLOID FORM OBTAINED BY TITLE 2 SOLID-STATE NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL S PROTEIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: C-TERMINAL PRION FORMING DOMAIN, UNP RESIDUES 218-289; COMPND 5 SYNONYM: HET-S; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PODOSPORA ANSERINA; SOURCE 3 ORGANISM_COMMON: FUNGI; SOURCE 4 ORGANISM_TAXID: 5145; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-24A KEYWDS HET-S(218-289), BETA-SOLENOID, PRION, AMYLOID FIBRIL, PARALLEL BETA- KEYWDS 2 SHEETS, HYDROPHOBIC CORE, SALT BRIDGES, ASPARAGINE LADDERS, BETA- KEYWDS 3 HELIX, PROTEIN FIBRIL EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.WASMER,A.LANGE,H.VAN MELCKEBEKE,A.SIEMER,R.RIEK,B.H.MEIER REVDAT 4 01-MAY-24 2RNM 1 REMARK SEQADV REVDAT 3 08-JUL-15 2RNM 1 REVDAT REVDAT 2 24-FEB-09 2RNM 1 VERSN REVDAT 1 01-APR-08 2RNM 0 JRNL AUTH C.WASMER,A.LANGE,H.VAN MELCKEBEKE,A.B.SIEMER,R.RIEK, JRNL AUTH 2 B.H.MEIER JRNL TITL AMYLOID FIBRILS OF THE HET-S(218-289) PRION FORM A BETA JRNL TITL 2 SOLENOID WITH A TRIANGULAR HYDROPHOBIC CORE JRNL REF SCIENCE V. 319 1523 2008 JRNL REFN ISSN 0036-8075 JRNL PMID 18339938 JRNL DOI 10.1126/SCIENCE.1151839 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA 2.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RNM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000150069. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100% [U-100% 13C; U-100% 15N] REMARK 210 HET-S(218-289); 100% H2O; 40% [2- REMARK 210 13C-100%, 15N-100%] HET-S(218- REMARK 210 289); 60% HET-S(218-289); 100% REMARK 210 H2O; 40% [1,3-13C-100%; 15N-100%] REMARK 210 HET-S(218-289); 60% HET-S(218- REMARK 210 289); 100% H2O; 100% [2-13C-100%; REMARK 210 15N-100%] HET-S(218-289); 100% REMARK 210 H2O; 50% [U-100% 13C] HET-S(218- REMARK 210 289); 50% [U-100% 15N] HET-S(218- REMARK 210 289); 100% H2O; 40% [U-100% 13C; REMARK 210 U-100% 15N] HET-S(218-289); 60% REMARK 210 HET-S(218-289); 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CHHC; NHHC; PDSD REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MOLMOL, PROCHECKNMR, PYMOL, REMARK 210 SPARKY, CARA, XWINNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STUDY HAS BEEN PERFORMED BY SOLID-STATE NMR. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 218 98.06 62.04 REMARK 500 1 ARG A 225 99.46 -166.44 REMARK 500 1 GLU A 235 68.85 68.56 REMARK 500 1 LEU A 250 -177.44 56.25 REMARK 500 1 ILE A 254 151.14 65.33 REMARK 500 1 ARG A 255 101.47 62.35 REMARK 500 1 ILE A 256 -40.97 -130.75 REMARK 500 1 SER A 257 -73.94 -166.24 REMARK 500 1 ASP A 258 93.45 57.61 REMARK 500 1 GLN A 259 -40.41 -130.86 REMARK 500 1 GLU A 265 -76.00 -78.44 REMARK 500 1 TRP A 287 -69.19 72.16 REMARK 500 1 ASP A 288 83.94 -172.95 REMARK 500 1 HIS A 290 30.04 -167.08 REMARK 500 1 HIS A 291 176.30 -58.57 REMARK 500 1 HIS A 292 -41.94 -163.82 REMARK 500 1 GLU B 235 64.24 66.98 REMARK 500 1 HIS B 251 86.37 61.19 REMARK 500 1 ILE B 254 -60.17 -99.95 REMARK 500 1 ARG B 255 102.94 -56.23 REMARK 500 1 GLN B 259 48.38 -170.82 REMARK 500 1 GLU B 265 -76.78 -78.05 REMARK 500 1 GLU B 272 73.48 49.68 REMARK 500 1 LYS B 284 86.22 -69.68 REMARK 500 1 TRP B 287 -69.66 71.51 REMARK 500 1 HIS B 290 125.48 -173.65 REMARK 500 1 ARG C 225 123.62 -178.56 REMARK 500 1 GLU C 235 72.71 63.36 REMARK 500 1 ALA C 249 107.16 -51.82 REMARK 500 1 LEU C 250 -50.26 -138.29 REMARK 500 1 SER C 257 -175.01 -174.49 REMARK 500 1 ASP C 258 178.99 -59.13 REMARK 500 1 GLU C 265 -76.71 -79.58 REMARK 500 1 LYS C 284 103.83 -51.67 REMARK 500 1 TRP C 287 -47.14 -163.78 REMARK 500 1 ASN C 289 88.14 -69.29 REMARK 500 1 HIS C 290 -66.96 -125.96 REMARK 500 1 HIS C 292 163.18 62.79 REMARK 500 1 ARG D 225 -74.56 -79.84 REMARK 500 1 GLU D 235 71.05 64.99 REMARK 500 1 ALA D 249 103.88 -51.64 REMARK 500 1 LEU D 250 -169.96 -114.26 REMARK 500 1 SER D 257 -174.32 62.03 REMARK 500 1 GLN D 259 -73.54 -146.97 REMARK 500 1 GLU D 265 -76.65 -81.07 REMARK 500 1 LYS D 284 28.05 -166.07 REMARK 500 1 TRP D 287 -74.02 -48.96 REMARK 500 1 HIS D 291 -176.60 -179.17 REMARK 500 1 HIS D 292 -169.98 -64.19 REMARK 500 1 LYS E 218 88.64 -176.16 REMARK 500 REMARK 500 THIS ENTRY HAS 1368 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11028 RELATED DB: BMRB DBREF 2RNM A 218 289 UNP Q03689 Q03689_PODAN 218 289 DBREF 2RNM B 218 289 UNP Q03689 Q03689_PODAN 218 289 DBREF 2RNM C 218 289 UNP Q03689 Q03689_PODAN 218 289 DBREF 2RNM D 218 289 UNP Q03689 Q03689_PODAN 218 289 DBREF 2RNM E 218 289 UNP Q03689 Q03689_PODAN 218 289 SEQADV 2RNM MET A 217 UNP Q03689 INITIATING METHIONINE SEQADV 2RNM HIS A 290 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS A 291 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS A 292 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS A 293 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS A 294 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS A 295 UNP Q03689 EXPRESSION TAG SEQADV 2RNM MET B 217 UNP Q03689 INITIATING METHIONINE SEQADV 2RNM HIS B 290 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS B 291 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS B 292 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS B 293 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS B 294 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS B 295 UNP Q03689 EXPRESSION TAG SEQADV 2RNM MET C 217 UNP Q03689 INITIATING METHIONINE SEQADV 2RNM HIS C 290 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS C 291 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS C 292 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS C 293 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS C 294 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS C 295 UNP Q03689 EXPRESSION TAG SEQADV 2RNM MET D 217 UNP Q03689 INITIATING METHIONINE SEQADV 2RNM HIS D 290 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS D 291 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS D 292 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS D 293 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS D 294 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS D 295 UNP Q03689 EXPRESSION TAG SEQADV 2RNM MET E 217 UNP Q03689 INITIATING METHIONINE SEQADV 2RNM HIS E 290 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS E 291 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS E 292 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS E 293 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS E 294 UNP Q03689 EXPRESSION TAG SEQADV 2RNM HIS E 295 UNP Q03689 EXPRESSION TAG SEQRES 1 A 79 MET LYS ILE ASP ALA ILE VAL GLY ARG ASN SER ALA LYS SEQRES 2 A 79 ASP ILE ARG THR GLU GLU ARG ALA ARG VAL GLN LEU GLY SEQRES 3 A 79 ASN VAL VAL THR ALA ALA ALA LEU HIS GLY GLY ILE ARG SEQRES 4 A 79 ILE SER ASP GLN THR THR ASN SER VAL GLU THR VAL VAL SEQRES 5 A 79 GLY LYS GLY GLU SER ARG VAL LEU ILE GLY ASN GLU TYR SEQRES 6 A 79 GLY GLY LYS GLY PHE TRP ASP ASN HIS HIS HIS HIS HIS SEQRES 7 A 79 HIS SEQRES 1 B 79 MET LYS ILE ASP ALA ILE VAL GLY ARG ASN SER ALA LYS SEQRES 2 B 79 ASP ILE ARG THR GLU GLU ARG ALA ARG VAL GLN LEU GLY SEQRES 3 B 79 ASN VAL VAL THR ALA ALA ALA LEU HIS GLY GLY ILE ARG SEQRES 4 B 79 ILE SER ASP GLN THR THR ASN SER VAL GLU THR VAL VAL SEQRES 5 B 79 GLY LYS GLY GLU SER ARG VAL LEU ILE GLY ASN GLU TYR SEQRES 6 B 79 GLY GLY LYS GLY PHE TRP ASP ASN HIS HIS HIS HIS HIS SEQRES 7 B 79 HIS SEQRES 1 C 79 MET LYS ILE ASP ALA ILE VAL GLY ARG ASN SER ALA LYS SEQRES 2 C 79 ASP ILE ARG THR GLU GLU ARG ALA ARG VAL GLN LEU GLY SEQRES 3 C 79 ASN VAL VAL THR ALA ALA ALA LEU HIS GLY GLY ILE ARG SEQRES 4 C 79 ILE SER ASP GLN THR THR ASN SER VAL GLU THR VAL VAL SEQRES 5 C 79 GLY LYS GLY GLU SER ARG VAL LEU ILE GLY ASN GLU TYR SEQRES 6 C 79 GLY GLY LYS GLY PHE TRP ASP ASN HIS HIS HIS HIS HIS SEQRES 7 C 79 HIS SEQRES 1 D 79 MET LYS ILE ASP ALA ILE VAL GLY ARG ASN SER ALA LYS SEQRES 2 D 79 ASP ILE ARG THR GLU GLU ARG ALA ARG VAL GLN LEU GLY SEQRES 3 D 79 ASN VAL VAL THR ALA ALA ALA LEU HIS GLY GLY ILE ARG SEQRES 4 D 79 ILE SER ASP GLN THR THR ASN SER VAL GLU THR VAL VAL SEQRES 5 D 79 GLY LYS GLY GLU SER ARG VAL LEU ILE GLY ASN GLU TYR SEQRES 6 D 79 GLY GLY LYS GLY PHE TRP ASP ASN HIS HIS HIS HIS HIS SEQRES 7 D 79 HIS SEQRES 1 E 79 MET LYS ILE ASP ALA ILE VAL GLY ARG ASN SER ALA LYS SEQRES 2 E 79 ASP ILE ARG THR GLU GLU ARG ALA ARG VAL GLN LEU GLY SEQRES 3 E 79 ASN VAL VAL THR ALA ALA ALA LEU HIS GLY GLY ILE ARG SEQRES 4 E 79 ILE SER ASP GLN THR THR ASN SER VAL GLU THR VAL VAL SEQRES 5 E 79 GLY LYS GLY GLU SER ARG VAL LEU ILE GLY ASN GLU TYR SEQRES 6 E 79 GLY GLY LYS GLY PHE TRP ASP ASN HIS HIS HIS HIS HIS SEQRES 7 E 79 HIS SHEET 1 A10 SER A 227 THR A 233 0 SHEET 2 A10 THR A 261 GLY A 269 1 O VAL A 267 N ARG A 232 SHEET 3 A10 ARG B 225 THR B 233 1 O ILE B 231 N VAL A 268 SHEET 4 A10 THR B 261 GLY B 269 1 O VAL B 267 N ARG B 232 SHEET 5 A10 ASN C 226 THR C 233 1 O THR C 233 N VAL B 268 SHEET 6 A10 ASN C 262 GLY C 269 1 O VAL C 267 N ARG C 232 SHEET 7 A10 ASN D 226 THR D 233 1 O THR D 233 N VAL C 268 SHEET 8 A10 SER D 263 GLY D 269 1 O VAL D 264 N LYS D 229 SHEET 9 A10 ASN E 226 THR E 233 1 O THR E 233 N VAL D 268 SHEET 10 A10 ASN E 262 VAL E 268 1 O VAL E 267 N ARG E 232 SHEET 1 B10 ARG A 238 LEU A 241 0 SHEET 2 B10 ARG A 274 ILE A 277 1 O VAL A 275 N ARG A 238 SHEET 3 B10 ARG B 238 LEU B 241 1 O VAL B 239 N ARG A 274 SHEET 4 B10 ARG B 274 ILE B 277 1 O VAL B 275 N GLN B 240 SHEET 5 B10 ARG C 238 LEU C 241 1 O VAL C 239 N ARG B 274 SHEET 6 B10 ARG C 274 ILE C 277 1 O VAL C 275 N GLN C 240 SHEET 7 B10 ARG D 238 LEU D 241 1 O VAL D 239 N LEU C 276 SHEET 8 B10 ARG D 274 ILE D 277 1 O VAL D 275 N GLN D 240 SHEET 9 B10 ARG E 238 LEU E 241 1 O VAL E 239 N ARG D 274 SHEET 10 B10 ARG E 274 ILE E 277 1 O VAL E 275 N GLN E 240 SHEET 1 C10 VAL A 244 VAL A 245 0 SHEET 2 C10 GLU A 280 TYR A 281 1 O TYR A 281 N VAL A 244 SHEET 3 C10 VAL B 244 VAL B 245 1 O VAL B 245 N GLU A 280 SHEET 4 C10 GLU B 280 TYR B 281 1 O TYR B 281 N VAL B 244 SHEET 5 C10 VAL C 244 VAL C 245 1 O VAL C 245 N GLU B 280 SHEET 6 C10 GLU C 280 TYR C 281 1 O TYR C 281 N VAL C 244 SHEET 7 C10 VAL D 244 VAL D 245 1 O VAL D 245 N GLU C 280 SHEET 8 C10 GLU D 280 TYR D 281 1 O TYR D 281 N VAL D 244 SHEET 9 C10 VAL E 244 VAL E 245 1 O VAL E 245 N GLU D 280 SHEET 10 C10 GLU E 280 TYR E 281 1 O TYR E 281 N VAL E 244 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1