HEADER APOPTOSIS 17-MAR-08 2ROC TITLE SOLUTION STRUCTURE OF MCL-1 COMPLEXED WITH PUMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 COMPND 3 HOMOLOG; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 152-308; COMPND 6 SYNONYM: BCL-2-RELATED PROTEIN EAT/MCL1, MCL-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BCL-2-BINDING COMPONENT 3; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: BH3 DOMAIN, RESIDUES 130-155; COMPND 12 SYNONYM: P53 UP-REGULATED MODULATOR OF APOPTOSIS, PUMA; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 GENE: MCL-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX6P-3; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 GENE: PUMA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET-31B KEYWDS MCL-1, BCL-2, APOPTOSIS, PUMA, BH3-ONLY, CYTOPLASM, DEVELOPMENTAL KEYWDS 2 PROTEIN, DIFFERENTIATION, MEMBRANE, MITOCHONDRION, NUCLEUS, KEYWDS 3 PHOSPHOPROTEIN, TRANSMEMBRANE, UBL CONJUGATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.L.DAY,C.SMITS,F.C.FAN,E.F.LEE,W.D.FAIRLIE,M.G.HINDS REVDAT 4 29-MAY-24 2ROC 1 REMARK REVDAT 3 10-NOV-21 2ROC 1 REMARK SEQADV REVDAT 2 24-FEB-09 2ROC 1 VERSN REVDAT 1 08-JUL-08 2ROC 0 JRNL AUTH C.L.DAY,C.SMITS,F.C.FAN,E.F.LEE,W.D.FAIRLIE,M.G.HINDS JRNL TITL STRUCTURE OF THE BH3 DOMAINS FROM THE P53-INDUCIBLE BH3-ONLY JRNL TITL 2 PROTEINS NOXA AND PUMA IN COMPLEX WITH MCL-1 JRNL REF J.MOL.BIOL. V. 380 958 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18589438 JRNL DOI 10.1016/J.JMB.2008.05.071 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE CALCULATED ON THE BASIS REMARK 3 OF 3667 TOTAL CONSTRAINTS. 2943 OF THESE CONSTRAINTS WERE NOE- REMARK 3 DERIVED DISTANCES OF WHICH 197 WERE INTERMOLECULAR NOES; 348 REMARK 3 DIHEDRAL ANGLE RESTRAINTS AND 188 HYDROGEN BONDS REMARK 4 REMARK 4 2ROC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000150090. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 120 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM [U-100% 13C; U-100% 15N] REMARK 210 MCL-1; 0.5MM PUMA; 95% H2O/5% REMARK 210 D2O; 0.5MM MCL-1; 0.5MM [U-100% REMARK 210 13C; U-100% 15N] PUMA; 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3, CYANA 2.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 256 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STANDARD HETERONUCLEAR METHODS WERE USED TO ASSIGN REMARK 210 RESONANCES AND DETERMINE THE CONSTRAINTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 178 OE2 GLU A 182 1.47 REMARK 500 OD1 ASP A 199 HH21 ARG A 203 1.50 REMARK 500 HE2 HIS A 233 OE2 GLU B 131 1.50 REMARK 500 HD1 HIS A 301 OD2 ASP A 304 1.51 REMARK 500 HZ3 LYS A 219 OD1 ASP A 223 1.51 REMARK 500 OE2 GLU A 221 HZ1 LYS A 225 1.52 REMARK 500 HH12 ARG A 291 OE1 GLU A 298 1.52 REMARK 500 OD1 ASP A 154 HH21 ARG A 157 1.53 REMARK 500 HH22 ARG A 291 OE2 GLU A 298 1.53 REMARK 500 OE2 GLU A 192 HH12 ARG A 195 1.53 REMARK 500 HH22 ARG A 165 OE1 GLU A 182 1.54 REMARK 500 OE1 GLU B 153 HH11 ARG B 154 1.54 REMARK 500 OE1 GLU A 169 HG SER A 177 1.54 REMARK 500 OE1 GLU A 169 HH21 ARG A 195 1.54 REMARK 500 HH21 ARG A 168 OE1 GLU A 269 1.55 REMARK 500 OD2 ASP A 217 HE2 HIS A 258 1.55 REMARK 500 HZ1 LYS A 283 OD1 ASP A 285 1.55 REMARK 500 OD1 ASP A 237 HH12 ARG A 244 1.55 REMARK 500 OE1 GLU B 131 HH11 ARG B 135 1.55 REMARK 500 OD2 ASP A 153 HH21 ARG A 281 1.55 REMARK 500 OD2 ASP A 285 HZ3 LYS A 289 1.57 REMARK 500 OE1 GLU B 136 HH12 ARG B 143 1.57 REMARK 500 HH21 ARG B 142 OD2 ASP B 146 1.58 REMARK 500 HE ARG A 244 OD1 ASP B 146 1.59 REMARK 500 HE21 GLN A 303 OXT MET B 156 1.59 REMARK 500 OE1 GLU A 206 HE21 GLN A 210 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 148 -153.85 -83.54 REMARK 500 1 LEU A 180 32.42 -72.67 REMARK 500 1 GLN A 264 45.61 -101.86 REMARK 500 1 GLU A 306 -67.33 65.90 REMARK 500 2 ASP A 176 90.78 -61.16 REMARK 500 2 LEU A 180 34.50 -78.95 REMARK 500 2 ARG B 154 23.12 -77.78 REMARK 500 3 PRO A 148 -101.48 -80.65 REMARK 500 3 PRO A 179 99.92 -24.90 REMARK 500 3 LEU A 180 31.21 -87.72 REMARK 500 3 LYS A 283 56.20 -145.31 REMARK 500 3 VAL A 302 95.17 -61.79 REMARK 500 4 LEU A 180 34.69 -88.75 REMARK 500 4 GLN A 264 50.73 -113.89 REMARK 500 4 ARG A 291 -42.67 72.19 REMARK 500 5 LEU A 180 35.32 -72.22 REMARK 500 5 ALA A 183 -63.62 -92.69 REMARK 500 5 HIS A 205 53.36 -113.03 REMARK 500 5 GLN A 264 43.44 -106.03 REMARK 500 5 VAL A 302 41.20 -81.73 REMARK 500 5 GLN A 303 29.37 -140.76 REMARK 500 5 LEU A 305 36.28 -75.77 REMARK 500 5 ARG B 154 33.73 -87.86 REMARK 500 6 ASP A 176 94.17 -65.02 REMARK 500 6 LEU A 180 34.53 -76.33 REMARK 500 6 HIS A 205 46.83 -105.51 REMARK 500 6 LEU A 216 59.35 -92.98 REMARK 500 6 GLN A 264 49.32 -90.73 REMARK 500 6 HIS A 301 75.16 -109.68 REMARK 500 6 GLU B 131 48.84 -83.27 REMARK 500 7 ASP A 176 109.92 -51.48 REMARK 500 7 PRO A 179 103.54 -38.85 REMARK 500 7 LEU A 180 32.97 -85.51 REMARK 500 7 HIS A 205 53.84 -116.94 REMARK 500 7 GLN A 264 47.31 -104.64 REMARK 500 7 LYS A 283 54.25 -148.63 REMARK 500 7 HIS A 301 163.77 73.55 REMARK 500 7 ASP A 304 -79.27 -55.48 REMARK 500 8 GLN A 264 50.61 -102.12 REMARK 500 8 LYS A 283 61.64 -150.94 REMARK 500 8 ARG A 291 147.44 69.82 REMARK 500 8 GLN A 303 91.74 69.84 REMARK 500 8 GLU A 306 49.37 -76.66 REMARK 500 9 ASP A 176 89.50 -163.48 REMARK 500 9 LEU A 180 29.13 -73.17 REMARK 500 9 HIS A 205 42.51 -100.66 REMARK 500 9 LEU A 216 57.43 -95.46 REMARK 500 9 GLN A 264 48.05 -106.28 REMARK 500 9 LEU A 305 -79.34 -109.06 REMARK 500 9 GLU A 306 -59.30 71.37 REMARK 500 REMARK 500 THIS ENTRY HAS 114 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WSX RELATED DB: PDB REMARK 900 UNLIGANDED MCL-1 REMARK 900 RELATED ID: 2JM6 RELATED DB: PDB REMARK 900 MCL-1:NOXAB COMPLEX REMARK 900 RELATED ID: 2ROD RELATED DB: PDB REMARK 900 MCL-1:NOXAA COMPLEX DBREF 2ROC A 152 308 UNP P97287 MCL1_MOUSE 152 308 DBREF 2ROC B 130 155 UNP Q99ML1 BBC3_MOUSE 130 155 SEQADV 2ROC GLY A 147 UNP P97287 EXPRESSION TAG SEQADV 2ROC PRO A 148 UNP P97287 EXPRESSION TAG SEQADV 2ROC LEU A 149 UNP P97287 EXPRESSION TAG SEQADV 2ROC GLY A 150 UNP P97287 EXPRESSION TAG SEQADV 2ROC SER A 151 UNP P97287 EXPRESSION TAG SEQADV 2ROC ILE B 144 UNP Q99ML1 MET 144 ENGINEERED MUTATION SEQADV 2ROC MET B 156 UNP Q99ML1 EXPRESSION TAG SEQRES 1 A 162 GLY PRO LEU GLY SER GLU ASP ASP LEU TYR ARG GLN SER SEQRES 2 A 162 LEU GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR SEQRES 3 A 162 GLY SER LYS ASP SER LYS PRO LEU GLY GLU ALA GLY ALA SEQRES 4 A 162 ALA GLY ARG ARG ALA LEU GLU THR LEU ARG ARG VAL GLY SEQRES 5 A 162 ASP GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY SEQRES 6 A 162 MET LEU ARG LYS LEU ASP ILE LYS ASN GLU GLY ASP VAL SEQRES 7 A 162 LYS SER PHE SER ARG VAL MET VAL HIS VAL PHE LYS ASP SEQRES 8 A 162 GLY VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER SEQRES 9 A 162 PHE GLY ALA PHE VAL ALA LYS HIS LEU LYS SER VAL ASN SEQRES 10 A 162 GLN GLU SER PHE ILE GLU PRO LEU ALA GLU THR ILE THR SEQRES 11 A 162 ASP VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS SEQRES 12 A 162 GLN ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL SEQRES 13 A 162 GLN ASP LEU GLU GLY GLY SEQRES 1 B 27 GLU GLU GLU TRP ALA ARG GLU ILE GLY ALA GLN LEU ARG SEQRES 2 B 27 ARG ILE ALA ASP ASP LEU ASN ALA GLN TYR GLU ARG ARG SEQRES 3 B 27 MET HELIX 1 1 PRO A 148 GLU A 152 5 5 HELIX 2 2 ASP A 153 GLY A 173 1 21 HELIX 3 3 GLY A 184 HIS A 205 1 22 HELIX 4 4 HIS A 205 LEU A 216 1 12 HELIX 5 5 GLU A 221 PHE A 235 1 15 HELIX 6 6 LYS A 236 GLY A 238 5 3 HELIX 7 7 ASN A 241 VAL A 262 1 22 HELIX 8 8 GLN A 264 LYS A 283 1 20 HELIX 9 9 LYS A 283 GLN A 290 1 8 HELIX 10 10 GLY A 292 HIS A 301 1 10 HELIX 11 11 GLU B 131 ARG B 154 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1