HEADER DNA BINDING PROTEIN 22-MAR-08 2ROH TITLE THE DNA BINDING DOMAIN OF RTBP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERE BINDING PROTEIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 SYNONYM: RTBP1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX 4T-1 KEYWDS TELOMERE BINDING PROTEIN, PLANT, NUCLEUS, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.LEE,S.KO REVDAT 3 14-JUN-23 2ROH 1 REMARK REVDAT 2 26-FEB-20 2ROH 1 REMARK SEQADV REVDAT 1 24-MAR-09 2ROH 0 JRNL AUTH S.KO,E.Y.YU,J.SHIN,H.H.YOO,T.TANAKA,W.T.KIM,H.S.CHO,W.LEE, JRNL AUTH 2 I.K.CHUNG JRNL TITL SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF RICE JRNL TITL 2 TELOMERE BINDING PROTEIN RTBP1 JRNL REF BIOCHEMISTRY V. 48 827 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19152316 JRNL DOI 10.1021/BI801270G REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2.5, CYANA 2.2.5 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ROH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000150095. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 OR 1.3 MM [U-99% 15N] THE DNA REMARK 210 BINDING DOMAI OF RTBP1, 90% H2O/ REMARK 210 10% D2O; 1 OR 1.3 MM [U-100% 13C] REMARK 210 THE DNA BINDING DOMAI OF RTBP1, REMARK 210 100% D2O; 1 OR 1.3 MM [U-99% 13C; REMARK 210 U-99% 15N] THE DNA BINDING REMARK 210 DOMAI OF RTBP1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 12 102.74 62.05 REMARK 500 1 PRO A 23 -172.39 -69.74 REMARK 500 1 ARG A 29 177.83 -57.20 REMARK 500 1 THR A 51 66.34 -160.28 REMARK 500 1 PHE A 62 93.74 -172.89 REMARK 500 1 ASN A 64 -41.68 -158.96 REMARK 500 1 VAL A 65 -172.08 -60.04 REMARK 500 1 HIS A 67 170.84 -52.62 REMARK 500 1 ARG A 68 -75.69 -109.41 REMARK 500 1 ILE A 86 178.84 -55.74 REMARK 500 1 ARG A 92 62.67 -113.67 REMARK 500 1 PRO A 95 77.50 -69.68 REMARK 500 1 SER A 112 -77.07 -58.21 REMARK 500 1 VAL A 113 -70.24 -123.27 REMARK 500 1 ASP A 114 -72.73 -126.78 REMARK 500 2 SER A 2 -61.04 179.54 REMARK 500 2 PRO A 3 97.95 -69.76 REMARK 500 2 PRO A 7 -179.48 -69.82 REMARK 500 2 LEU A 12 43.17 -93.97 REMARK 500 2 ARG A 28 173.40 -59.43 REMARK 500 2 THR A 51 78.83 -109.24 REMARK 500 2 ALA A 61 -76.26 -80.18 REMARK 500 2 PHE A 62 106.41 -168.33 REMARK 500 2 GLU A 63 34.83 -93.54 REMARK 500 2 ASN A 64 19.57 -151.36 REMARK 500 2 ILE A 86 173.07 -52.76 REMARK 500 2 PRO A 95 78.03 -69.78 REMARK 500 3 PRO A 16 -175.41 -69.79 REMARK 500 3 PRO A 23 -172.72 -69.75 REMARK 500 3 PRO A 33 91.57 -69.70 REMARK 500 3 ALA A 61 -72.03 -69.73 REMARK 500 3 PHE A 62 101.14 -168.12 REMARK 500 3 HIS A 67 39.42 -152.90 REMARK 500 3 ILE A 86 -179.57 -56.47 REMARK 500 3 ARG A 92 109.72 -51.70 REMARK 500 3 PRO A 95 74.74 -69.77 REMARK 500 4 PRO A 7 -179.80 -69.74 REMARK 500 4 ALA A 11 120.78 -174.31 REMARK 500 4 LEU A 12 67.30 -112.79 REMARK 500 4 LYS A 21 44.55 -93.27 REMARK 500 4 ARG A 22 71.02 -174.18 REMARK 500 4 ARG A 29 44.57 -95.46 REMARK 500 4 PRO A 33 88.39 -69.78 REMARK 500 4 THR A 51 44.51 -93.60 REMARK 500 4 ALA A 61 -74.10 -77.33 REMARK 500 4 PHE A 62 104.59 -166.13 REMARK 500 4 GLU A 63 40.28 -94.14 REMARK 500 4 ASN A 64 20.51 -152.21 REMARK 500 4 HIS A 67 85.96 51.14 REMARK 500 4 ARG A 92 102.73 -52.74 REMARK 500 REMARK 500 THIS ENTRY HAS 264 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11038 RELATED DB: BMRB DBREF 2ROH A 3 112 UNP Q9LL45 Q9LL45_ORYSA 506 615 SEQADV 2ROH GLY A 1 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH SER A 2 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH VAL A 113 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH ASP A 114 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH SER A 115 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH SER A 116 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH GLY A 117 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH ARG A 118 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH ILE A 119 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH VAL A 120 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH THR A 121 UNP Q9LL45 EXPRESSION TAG SEQADV 2ROH LEU A 122 UNP Q9LL45 EXPRESSION TAG SEQRES 1 A 122 GLY SER PRO PHE ALA ASP PRO ASN SER LEU ALA LEU ALA SEQRES 2 A 122 ASN VAL PRO LEU SER ARG SER LYS ARG PRO ASP PHE GLY SEQRES 3 A 122 GLN ARG ARG ILE ARG ARG PRO PHE THR VAL ALA GLU VAL SEQRES 4 A 122 GLU LEU LEU VAL GLU ALA VAL GLU HIS LEU GLY THR GLY SEQRES 5 A 122 ARG TRP ARG ASP VAL LYS PHE ARG ALA PHE GLU ASN VAL SEQRES 6 A 122 HIS HIS ARG THR TYR VAL ASP LEU LYS ASP LYS TRP LYS SEQRES 7 A 122 THR LEU VAL HIS THR ALA SER ILE ALA PRO GLN GLN ARG SEQRES 8 A 122 ARG GLY ALA PRO VAL PRO GLN GLU LEU LEU ASP ARG VAL SEQRES 9 A 122 LEU ALA ALA GLN ALA TYR TRP SER VAL ASP SER SER GLY SEQRES 10 A 122 ARG ILE VAL THR LEU HELIX 1 1 THR A 35 GLY A 50 1 16 HELIX 2 2 ARG A 53 GLU A 63 1 11 HELIX 3 3 THR A 69 ILE A 86 1 18 HELIX 4 4 PRO A 97 VAL A 113 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1