data_2RPA # _entry.id 2RPA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RPA pdb_00002rpa 10.2210/pdb2rpa/pdb RCSB RCSB150120 ? ? WWPDB D_1000150120 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.db_id 11075 _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RPA _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2008-05-13 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Iwaya, N.' 1 'Kuwahara, Y.' 2 'Unzai, S.' 3 'Nagata, T.' 4 'Tomii, K.' 5 'Goda, N.' 6 'Tochio, H.' 7 'Shirakawa, M.' 8 'Hiroaki, H.' 9 # _citation.id primary _citation.title ;A common substrate recognition mode conserved between katanin P60 and VPS4 governs microtubule severing and membrane skeleton reorganization ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 16822 _citation.page_last 16829 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20339000 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.108365 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Iwaya, N.' 1 ? primary 'Kuwahara, Y.' 2 ? primary 'Fujiwara, Y.' 3 ? primary 'Goda, N.' 4 ? primary 'Tenno, T.' 5 ? primary 'Akiyama, K.' 6 ? primary 'Mase, S.' 7 ? primary 'Tochio, H.' 8 ? primary 'Ikegami, T.' 9 ? primary 'Shirakawa, M.' 10 ? primary 'Hiroaki, H.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Katanin p60 ATPase-containing subunit A1' _entity.formula_weight 9256.642 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.6.4.3 _entity.pdbx_mutation ? _entity.pdbx_fragment 'N-teminal domain, residues 1-72' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Katanin p60 subunit A1, p60 katanin, Lipotransin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSDHMTMSLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKDIMKT _entity_poly.pdbx_seq_one_letter_code_can GSDHMTMSLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKDIMKT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASP n 1 4 HIS n 1 5 MET n 1 6 THR n 1 7 MET n 1 8 SER n 1 9 LEU n 1 10 GLN n 1 11 MET n 1 12 ILE n 1 13 VAL n 1 14 GLU n 1 15 ASN n 1 16 VAL n 1 17 LYS n 1 18 LEU n 1 19 ALA n 1 20 ARG n 1 21 GLU n 1 22 TYR n 1 23 ALA n 1 24 LEU n 1 25 LEU n 1 26 GLY n 1 27 ASN n 1 28 TYR n 1 29 ASP n 1 30 SER n 1 31 ALA n 1 32 MET n 1 33 VAL n 1 34 TYR n 1 35 TYR n 1 36 GLN n 1 37 GLY n 1 38 VAL n 1 39 LEU n 1 40 ASP n 1 41 GLN n 1 42 MET n 1 43 ASN n 1 44 LYS n 1 45 TYR n 1 46 LEU n 1 47 TYR n 1 48 SER n 1 49 VAL n 1 50 LYS n 1 51 ASP n 1 52 THR n 1 53 HIS n 1 54 LEU n 1 55 ARG n 1 56 GLN n 1 57 LYS n 1 58 TRP n 1 59 GLN n 1 60 GLN n 1 61 VAL n 1 62 TRP n 1 63 GLN n 1 64 GLU n 1 65 ILE n 1 66 ASN n 1 67 VAL n 1 68 GLU n 1 69 ALA n 1 70 LYS n 1 71 GLN n 1 72 VAL n 1 73 LYS n 1 74 ASP n 1 75 ILE n 1 76 MET n 1 77 LYS n 1 78 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Katna1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pGEX-4T3 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KTNA1_MOUSE _struct_ref.pdbx_db_accession Q9WV86 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MSLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKDIMKT _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RPA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 78 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WV86 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 72 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 72 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RPA GLY A 1 ? UNP Q9WV86 ? ? 'expression tag' -6 1 1 2RPA SER A 2 ? UNP Q9WV86 ? ? 'expression tag' -5 2 1 2RPA ASP A 3 ? UNP Q9WV86 ? ? 'expression tag' -4 3 1 2RPA HIS A 4 ? UNP Q9WV86 ? ? 'expression tag' -3 4 1 2RPA MET A 5 ? UNP Q9WV86 ? ? 'expression tag' -2 5 1 2RPA THR A 6 ? UNP Q9WV86 ? ? 'expression tag' -1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D HNCACB' 1 3 1 '3D HNCA' 1 4 1 '3D CBCA(CO)NH' 1 5 1 '3D HNCO' 2 6 2 '3D CC(CO)NH' 2 7 2 '3D HCC(CO)NH' 2 8 2 '3D 15N-edited NOESY' 2 9 2 '3D 13C-edited NOESY' 2 10 2 '3D HCCH-TOCSY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 20 6.5 ambient ? 298 K 2 70 6.5 ambient ? 298 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.5mM [U-13C; U-15N] katanin p60; 20mM sodium phosphate; 1mM EDTA; 95% H2O/5% D2O' 1 '95% H2O/5% D2O' '0.7mM [U-13C; U-15N] katanin p60; 20mM sodium phosphate; 50mM sodium chloride; 1mM EDTA; 95% H2O/5% D2O' 2 '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker DRX 1 'Bruker DRX' 800 Bruker DRX 2 'Bruker DRX' 900 Varian INOVA 3 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2RPA _pdbx_nmr_refine.method 'distance geometry, rigid body restrained molecular dynamics, dihedral angle molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RPA _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 11 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RPA _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.0.17 1 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 2.0.17 2 'Koradi, Billeter and Wuthrich' 'chemical shift assignment' MOLMOL 2K.2 3 'Koradi, Billeter and Wuthrich' refinement MOLMOL 2K.2 4 Goddard refinement Sparky 3.106 5 Goddard 'chemical shift assignment' Sparky 3.106 6 'Bruker Biospin' collection XwinNMR 3.5 7 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 2.3 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2RPA _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RPA _struct.title 'The solution structure of N-terminal domain of microtubule severing enzyme' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RPA _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;AAA ATPase, ATP-binding, Cell cycle, Cell division, Cytoplasm, Hydrolase, Microtubule, microtubule severing enzyme, Mitosis, Nucleotide-binding ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 9 ? GLY A 26 ? LEU A 3 GLY A 20 1 ? 18 HELX_P HELX_P2 2 TYR A 28 ? SER A 48 ? TYR A 22 SER A 42 1 ? 21 HELX_P HELX_P3 3 ASP A 51 ? MET A 76 ? ASP A 45 MET A 70 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2RPA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -6 ? ? ? A . n A 1 2 SER 2 -5 -5 SER SER A . n A 1 3 ASP 3 -4 -4 ASP ASP A . n A 1 4 HIS 4 -3 -3 HIS HIS A . n A 1 5 MET 5 -2 -2 MET MET A . n A 1 6 THR 6 -1 -1 THR THR A . n A 1 7 MET 7 1 1 MET MET A . n A 1 8 SER 8 2 2 SER SER A . n A 1 9 LEU 9 3 3 LEU LEU A . n A 1 10 GLN 10 4 4 GLN GLN A . n A 1 11 MET 11 5 5 MET MET A . n A 1 12 ILE 12 6 6 ILE ILE A . n A 1 13 VAL 13 7 7 VAL VAL A . n A 1 14 GLU 14 8 8 GLU GLU A . n A 1 15 ASN 15 9 9 ASN ASN A . n A 1 16 VAL 16 10 10 VAL VAL A . n A 1 17 LYS 17 11 11 LYS LYS A . n A 1 18 LEU 18 12 12 LEU LEU A . n A 1 19 ALA 19 13 13 ALA ALA A . n A 1 20 ARG 20 14 14 ARG ARG A . n A 1 21 GLU 21 15 15 GLU GLU A . n A 1 22 TYR 22 16 16 TYR TYR A . n A 1 23 ALA 23 17 17 ALA ALA A . n A 1 24 LEU 24 18 18 LEU LEU A . n A 1 25 LEU 25 19 19 LEU LEU A . n A 1 26 GLY 26 20 20 GLY GLY A . n A 1 27 ASN 27 21 21 ASN ASN A . n A 1 28 TYR 28 22 22 TYR TYR A . n A 1 29 ASP 29 23 23 ASP ASP A . n A 1 30 SER 30 24 24 SER SER A . n A 1 31 ALA 31 25 25 ALA ALA A . n A 1 32 MET 32 26 26 MET MET A . n A 1 33 VAL 33 27 27 VAL VAL A . n A 1 34 TYR 34 28 28 TYR TYR A . n A 1 35 TYR 35 29 29 TYR TYR A . n A 1 36 GLN 36 30 30 GLN GLN A . n A 1 37 GLY 37 31 31 GLY GLY A . n A 1 38 VAL 38 32 32 VAL VAL A . n A 1 39 LEU 39 33 33 LEU LEU A . n A 1 40 ASP 40 34 34 ASP ASP A . n A 1 41 GLN 41 35 35 GLN GLN A . n A 1 42 MET 42 36 36 MET MET A . n A 1 43 ASN 43 37 37 ASN ASN A . n A 1 44 LYS 44 38 38 LYS LYS A . n A 1 45 TYR 45 39 39 TYR TYR A . n A 1 46 LEU 46 40 40 LEU LEU A . n A 1 47 TYR 47 41 41 TYR TYR A . n A 1 48 SER 48 42 42 SER SER A . n A 1 49 VAL 49 43 43 VAL VAL A . n A 1 50 LYS 50 44 44 LYS LYS A . n A 1 51 ASP 51 45 45 ASP ASP A . n A 1 52 THR 52 46 46 THR THR A . n A 1 53 HIS 53 47 47 HIS HIS A . n A 1 54 LEU 54 48 48 LEU LEU A . n A 1 55 ARG 55 49 49 ARG ARG A . n A 1 56 GLN 56 50 50 GLN GLN A . n A 1 57 LYS 57 51 51 LYS LYS A . n A 1 58 TRP 58 52 52 TRP TRP A . n A 1 59 GLN 59 53 53 GLN GLN A . n A 1 60 GLN 60 54 54 GLN GLN A . n A 1 61 VAL 61 55 55 VAL VAL A . n A 1 62 TRP 62 56 56 TRP TRP A . n A 1 63 GLN 63 57 57 GLN GLN A . n A 1 64 GLU 64 58 58 GLU GLU A . n A 1 65 ILE 65 59 59 ILE ILE A . n A 1 66 ASN 66 60 60 ASN ASN A . n A 1 67 VAL 67 61 61 VAL VAL A . n A 1 68 GLU 68 62 62 GLU GLU A . n A 1 69 ALA 69 63 63 ALA ALA A . n A 1 70 LYS 70 64 64 LYS LYS A . n A 1 71 GLN 71 65 65 GLN GLN A . n A 1 72 VAL 72 66 66 VAL VAL A . n A 1 73 LYS 73 67 67 LYS LYS A . n A 1 74 ASP 74 68 68 ASP ASP A . n A 1 75 ILE 75 69 69 ILE ILE A . n A 1 76 MET 76 70 70 MET MET A . n A 1 77 LYS 77 71 71 LYS LYS A . n A 1 78 THR 78 72 72 THR THR A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_entry_details.entry_id 2RPA _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE NUMBERING OF THE PROTEIN SIMPLY SKIPS NUMBER ZERO WITHOUT ANY GAPS TO CLARIFY THE EXPRESSION TAGS.' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'katanin p60' 0.5 mM '[U-13C; U-15N]' 1 'sodium phosphate' 20 mM ? 1 EDTA 1 mM ? 1 'katanin p60' 0.7 mM '[U-13C; U-15N]' 2 'sodium phosphate' 20 mM ? 2 'sodium chloride' 50 mM ? 2 EDTA 1 mM ? 2 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 1 ? ? -35.25 109.80 2 1 ILE A 6 ? ? -94.02 -65.42 3 2 ILE A 6 ? ? -91.65 -64.79 4 3 HIS A -3 ? ? -42.32 162.59 5 3 MET A -2 ? ? -61.28 -177.28 6 3 THR A -1 ? ? -173.97 141.47 7 3 SER A 2 ? ? -86.74 31.22 8 4 ILE A 6 ? ? -95.14 -64.94 9 4 ASP A 45 ? ? -68.36 92.60 10 5 SER A 2 ? ? -49.67 155.52 11 5 ILE A 6 ? ? -94.33 -64.04 12 6 LEU A 3 ? ? 41.17 26.02 13 6 ILE A 6 ? ? -93.11 -65.47 14 7 ILE A 6 ? ? -90.46 -65.01 15 7 ASP A 45 ? ? -49.14 88.65 16 8 THR A -1 ? ? -87.04 39.54 17 8 ILE A 6 ? ? -97.38 -64.98 18 9 HIS A -3 ? ? -36.16 135.99 19 9 MET A 5 ? ? -47.55 -18.49 20 9 ILE A 6 ? ? -90.11 -65.42 21 10 ILE A 6 ? ? -91.79 -65.80 22 11 THR A -1 ? ? -36.11 153.57 23 11 LEU A 3 ? ? -89.67 37.14 24 11 GLN A 4 ? ? -93.96 -61.10 25 12 SER A 2 ? ? -95.33 -63.37 26 12 ILE A 6 ? ? -95.32 -62.47 27 13 HIS A -3 ? ? 34.68 44.13 28 13 ASP A 45 ? ? -53.95 93.23 29 14 LEU A 3 ? ? 35.93 36.41 30 14 ILE A 6 ? ? -93.51 -65.06 31 14 ASP A 45 ? ? -53.45 94.51 32 15 SER A 2 ? ? -132.78 -55.17 33 15 ILE A 6 ? ? -90.26 -66.65 34 15 ASP A 45 ? ? -59.34 91.16 35 16 ILE A 6 ? ? -93.24 -64.85 36 17 THR A -1 ? ? -35.24 131.63 37 17 ILE A 6 ? ? -92.76 -64.61 38 18 SER A 2 ? ? -106.10 52.14 39 18 GLN A 4 ? ? -108.12 -62.83 40 18 ASP A 45 ? ? -53.92 87.50 41 19 GLN A 4 ? ? -90.53 -64.35 42 19 MET A 5 ? ? -48.00 -17.98 43 19 ASP A 45 ? ? -43.45 105.73 44 20 ILE A 6 ? ? -93.64 -63.28 45 20 ASP A 45 ? ? -47.39 90.67 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -6 ? A GLY 1 2 2 Y 1 A GLY -6 ? A GLY 1 3 3 Y 1 A GLY -6 ? A GLY 1 4 4 Y 1 A GLY -6 ? A GLY 1 5 5 Y 1 A GLY -6 ? A GLY 1 6 6 Y 1 A GLY -6 ? A GLY 1 7 7 Y 1 A GLY -6 ? A GLY 1 8 8 Y 1 A GLY -6 ? A GLY 1 9 9 Y 1 A GLY -6 ? A GLY 1 10 10 Y 1 A GLY -6 ? A GLY 1 11 11 Y 1 A GLY -6 ? A GLY 1 12 12 Y 1 A GLY -6 ? A GLY 1 13 13 Y 1 A GLY -6 ? A GLY 1 14 14 Y 1 A GLY -6 ? A GLY 1 15 15 Y 1 A GLY -6 ? A GLY 1 16 16 Y 1 A GLY -6 ? A GLY 1 17 17 Y 1 A GLY -6 ? A GLY 1 18 18 Y 1 A GLY -6 ? A GLY 1 19 19 Y 1 A GLY -6 ? A GLY 1 20 20 Y 1 A GLY -6 ? A GLY 1 #