HEADER STRUCTURAL PROTEIN 12-JUN-08 2RPN TITLE A CRUCIAL ROLE FOR HIGH INTRINSIC SPECIFICITY IN THE FUNCTION OF YEAST TITLE 2 SH3 DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: ABP1P; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACTIN-REGULATING KINASE 1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 605-621; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET32A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET32A KEYWDS SH3 DOMAIN, EXTENDED PEPTIDE, 3-10 HELIX, ACETYLATION, ACTIN-BINDING, KEYWDS 2 CYTOPLASM, CYTOSKELETON, PHOSPHOPROTEIN, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.J.STOLLAR,B.GARCIA,A.CHONG,J.FORMAN-KAY,A.DAVIDSON REVDAT 5 29-MAY-24 2RPN 1 REMARK REVDAT 4 16-MAR-22 2RPN 1 REMARK SEQADV REVDAT 3 13-OCT-09 2RPN 1 JRNL REVDAT 2 04-AUG-09 2RPN 1 JRNL REVDAT 1 16-JUN-09 2RPN 0 JRNL AUTH E.J.STOLLAR,B.GARCIA,P.A.CHONG,A.RATH,H.LIN,J.D.FORMAN-KAY, JRNL AUTH 2 A.R.DAVIDSON JRNL TITL STRUCTURAL, FUNCTIONAL, AND BIOINFORMATIC STUDIES JRNL TITL 2 DEMONSTRATE THE CRUCIAL ROLE OF AN EXTENDED PEPTIDE BINDING JRNL TITL 3 SITE FOR THE SH3 DOMAIN OF YEAST ABP1P JRNL REF J.BIOL.CHEM. V. 284 26918 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19590096 JRNL DOI 10.1074/JBC.M109.028431 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, ARIA REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000150133. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.208 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM SODIUM PHOSPHATE; 100MM REMARK 210 SODIUM CHLORIDE; 1MM SODIUM REMARK 210 AZIDE; 1MM EDTA; 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H COSY; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N TOCSY; HN-N RDC; REMARK 210 HACAN; N-CO RDC; CA-HA RDC; CA- REMARK 210 CO RDC; CA-CB RDC; 3J NC; 3J CC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, MOLMOL, NMRDRAW, REMARK 210 NMRPIPE, ARIA, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 51 H TYR A 54 1.51 REMARK 500 H ILE A 27 O GLU A 40 1.55 REMARK 500 O LEU A 41 H GLY A 45 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 9 87.22 -65.11 REMARK 500 1 ASP A 11 62.69 -117.26 REMARK 500 1 ALA A 12 93.10 12.62 REMARK 500 1 ASP A 15 -66.35 102.06 REMARK 500 1 ASN A 16 59.88 -93.55 REMARK 500 1 GLU A 22 144.52 -19.12 REMARK 500 1 PHE A 31 56.27 -101.94 REMARK 500 1 GLU A 40 118.02 -164.11 REMARK 500 1 SER A 52 -24.57 -33.91 REMARK 500 1 LYS B 6 -55.91 123.67 REMARK 500 1 LYS B 5 79.39 60.11 REMARK 500 1 THR B 4 35.67 131.85 REMARK 500 1 PRO B 2 164.61 -46.12 REMARK 500 1 PRO B 0 99.15 -45.30 REMARK 500 1 PRO B -2 162.23 -37.30 REMARK 500 2 ASP A 9 90.49 -66.51 REMARK 500 2 ASP A 11 64.53 -117.96 REMARK 500 2 ALA A 12 103.61 13.76 REMARK 500 2 ASP A 15 -65.92 103.47 REMARK 500 2 GLU A 22 150.29 -25.95 REMARK 500 2 PHE A 31 63.78 -114.07 REMARK 500 2 GLU A 40 117.08 -164.03 REMARK 500 2 SER A 52 -60.54 -101.16 REMARK 500 2 LYS B 6 62.75 -113.45 REMARK 500 2 THR B 4 127.03 112.65 REMARK 500 2 PRO B 2 170.83 -42.18 REMARK 500 2 PRO B -2 154.54 -38.89 REMARK 500 3 ASP A 9 88.48 -64.16 REMARK 500 3 ASP A 11 63.67 -117.32 REMARK 500 3 ALA A 12 93.23 12.26 REMARK 500 3 ASP A 15 -63.61 102.38 REMARK 500 3 GLU A 22 143.22 -19.19 REMARK 500 3 PHE A 31 66.54 -110.00 REMARK 500 3 PRO B 2 169.19 -42.40 REMARK 500 3 PRO B -2 70.39 -40.20 REMARK 500 4 ASP A 9 88.10 -64.21 REMARK 500 4 ASP A 11 63.55 -117.12 REMARK 500 4 ALA A 12 94.44 11.65 REMARK 500 4 ASP A 15 -64.79 103.73 REMARK 500 4 ASN A 16 59.92 -94.06 REMARK 500 4 GLU A 22 147.41 -23.55 REMARK 500 4 PHE A 31 69.56 -108.59 REMARK 500 4 GLU A 40 119.68 -163.88 REMARK 500 4 PRO A 51 -179.01 -60.98 REMARK 500 4 LYS B 6 151.66 -42.17 REMARK 500 4 THR B 4 120.42 110.68 REMARK 500 4 PRO B 2 171.70 -42.50 REMARK 500 4 PRO B -2 161.29 -36.78 REMARK 500 5 ASP A 9 88.41 -64.84 REMARK 500 5 ASP A 11 63.50 -118.89 REMARK 500 REMARK 500 THIS ENTRY HAS 270 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE NUMBERING IS SEQUENTIALLY REDUCED IN CHAIN B. DBREF 2RPN A 2 59 UNP P15891 ABP1_YEAST 535 592 DBREF 2RPN B 6 -10 UNP P53974 ARK1_YEAST 605 621 SEQADV 2RPN ALA A 1 UNP P15891 EXPRESSION TAG SEQADV 2RPN ALA B 7 UNP P53974 EXPRESSION TAG SEQRES 1 A 59 ALA PRO TRP ALA THR ALA GLU TYR ASP TYR ASP ALA ALA SEQRES 2 A 59 GLU ASP ASN GLU LEU THR PHE VAL GLU ASN ASP LYS ILE SEQRES 3 A 59 ILE ASN ILE GLU PHE VAL ASP ASP ASP TRP TRP LEU GLY SEQRES 4 A 59 GLU LEU GLU LYS ASP GLY SER LYS GLY LEU PHE PRO SER SEQRES 5 A 59 ASN TYR VAL SER LEU GLY ASN SEQRES 1 B 18 ALA LYS LYS THR LYS PRO THR PRO PRO PRO LYS PRO SER SEQRES 2 B 18 HIS LEU LYS PRO LYS SHEET 1 A 5 LEU A 49 PRO A 51 0 SHEET 2 A 5 TRP A 36 GLU A 40 -1 N TRP A 37 O PHE A 50 SHEET 3 A 5 LYS A 25 GLU A 30 -1 N ILE A 27 O GLU A 40 SHEET 4 A 5 ALA A 4 ALA A 6 -1 N ALA A 4 O ILE A 26 SHEET 5 A 5 VAL A 55 LEU A 57 -1 O SER A 56 N THR A 5 SHEET 1 B 2 TYR A 10 ASP A 11 0 SHEET 2 B 2 THR A 19 PHE A 20 -1 O PHE A 20 N TYR A 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1