data_2RQ4 # _entry.id 2RQ4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RQ4 pdb_00002rq4 10.2210/pdb2rq4/pdb RCSB RCSB150150 ? ? WWPDB D_1000150150 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 2CPZ _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RQ4 _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-01-19 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Kuwasako, K.' 2 'Takahashi, M.' 3 'Someya, T.' 4 'Inoue, M.' 5 'Terada, T.' 6 'Kobayashi, N.' 7 'Shirouzu, M.' 8 'Kigawa, T.' 9 'Guntert, P.' 10 'Muto, Y.' 11 'Yokoyama, S.' 12 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 13 # _citation.id primary _citation.title 'Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 1362-4962 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19553194 _citation.pdbx_database_id_DOI 10.1093/nar/gkp546 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Kuwasako, K.' 2 ? primary 'Takahashi, M.' 3 ? primary 'Someya, T.' 4 ? primary 'Inoue, M.' 5 ? primary 'Terada, T.' 6 ? primary 'Kobayashi, N.' 7 ? primary 'Shirouzu, M.' 8 ? primary 'Kigawa, T.' 9 ? primary 'Tanaka, A.' 10 ? primary 'Sugano, S.' 11 ? primary 'Guntert, P.' 12 ? primary 'Muto, Y.' 13 ? primary 'Yokoyama, S.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'CUG-BP- and ETR-3-like factor 1' _entity.formula_weight 12264.778 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;CELF-1, Bruno-like protein 2, RNA-binding protein BRUNOL-2, CUG triplet repeat RNA-binding protein 1, CUG-BP1, Deadenylation factor CUG-BP, 50 kDa nuclear polyadenylated RNA-binding protein, Embryo deadenylation element-binding protein homolog, EDEN-BP homolog ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA QAAIQSMNGFQIGMKRLKVQLKRSKNDSKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA QAAIQSMNGFQIGMKRLKVQLKRSKNDSKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LEU n 1 9 THR n 1 10 GLN n 1 11 GLN n 1 12 SER n 1 13 ILE n 1 14 GLY n 1 15 ALA n 1 16 ALA n 1 17 GLY n 1 18 SER n 1 19 GLN n 1 20 LYS n 1 21 GLU n 1 22 GLY n 1 23 PRO n 1 24 GLU n 1 25 GLY n 1 26 ALA n 1 27 ASN n 1 28 LEU n 1 29 PHE n 1 30 ILE n 1 31 TYR n 1 32 HIS n 1 33 LEU n 1 34 PRO n 1 35 GLN n 1 36 GLU n 1 37 PHE n 1 38 GLY n 1 39 ASP n 1 40 GLN n 1 41 ASP n 1 42 LEU n 1 43 LEU n 1 44 GLN n 1 45 MET n 1 46 PHE n 1 47 MET n 1 48 PRO n 1 49 PHE n 1 50 GLY n 1 51 ASN n 1 52 VAL n 1 53 VAL n 1 54 SER n 1 55 ALA n 1 56 LYS n 1 57 VAL n 1 58 PHE n 1 59 ILE n 1 60 ASP n 1 61 LYS n 1 62 GLN n 1 63 THR n 1 64 ASN n 1 65 LEU n 1 66 SER n 1 67 LYS n 1 68 CYS n 1 69 PHE n 1 70 GLY n 1 71 PHE n 1 72 VAL n 1 73 SER n 1 74 TYR n 1 75 ASP n 1 76 ASN n 1 77 PRO n 1 78 VAL n 1 79 SER n 1 80 ALA n 1 81 GLN n 1 82 ALA n 1 83 ALA n 1 84 ILE n 1 85 GLN n 1 86 SER n 1 87 MET n 1 88 ASN n 1 89 GLY n 1 90 PHE n 1 91 GLN n 1 92 ILE n 1 93 GLY n 1 94 MET n 1 95 LYS n 1 96 ARG n 1 97 LEU n 1 98 LYS n 1 99 VAL n 1 100 GLN n 1 101 LEU n 1 102 LYS n 1 103 ARG n 1 104 SER n 1 105 LYS n 1 106 ASN n 1 107 ASP n 1 108 SER n 1 109 LYS n 1 110 SER n 1 111 GLY n 1 112 PRO n 1 113 SER n 1 114 SER n 1 115 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CUGBP1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'E. coli-cell-free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector P040329-21 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CELF1_HUMAN _struct_ref.pdbx_db_accession Q92879 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM NGFQIGMKRLKVQLKRSKNDSK ; _struct_ref.pdbx_align_begin 383 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RQ4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q92879 _struct_ref_seq.db_align_beg 383 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 484 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 383 _struct_ref_seq.pdbx_auth_seq_align_end 484 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RQ4 GLY A 1 ? UNP Q92879 ? ? 'expression tag' 376 1 1 2RQ4 SER A 2 ? UNP Q92879 ? ? 'expression tag' 377 2 1 2RQ4 SER A 3 ? UNP Q92879 ? ? 'expression tag' 378 3 1 2RQ4 GLY A 4 ? UNP Q92879 ? ? 'expression tag' 379 4 1 2RQ4 SER A 5 ? UNP Q92879 ? ? 'expression tag' 380 5 1 2RQ4 SER A 6 ? UNP Q92879 ? ? 'expression tag' 381 6 1 2RQ4 GLY A 7 ? UNP Q92879 ? ? 'expression tag' 382 7 1 2RQ4 SER A 110 ? UNP Q92879 ? ? 'expression tag' 485 8 1 2RQ4 GLY A 111 ? UNP Q92879 ? ? 'expression tag' 486 9 1 2RQ4 PRO A 112 ? UNP Q92879 ? ? 'expression tag' 487 10 1 2RQ4 SER A 113 ? UNP Q92879 ? ? 'expression tag' 488 11 1 2RQ4 SER A 114 ? UNP Q92879 ? ? 'expression tag' 489 12 1 2RQ4 GLY A 115 ? UNP Q92879 ? ? 'expression tag' 490 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-15N NOESY' 1 2 1 '3D 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1.37mM [U-100% 13C; U-100% 15N] protein, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2RQ4 _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RQ4 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RQ4 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' refinement Amber 9.0 1 'Bruker Biospin' collection XwinNMR 3.5 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 20030801 3 'Johnson, One Moon Scientific' 'data analysis' NMRView 5.0.4 4 'Kobayashi, N' 'data analysis' KUJIRA 0.9297 5 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.0.17 6 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2RQ4 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RQ4 _struct.title 'Refinement of RNA binding domain 3 in CUG triplet repeat RNA-binding protein 1' _struct.pdbx_model_details 'fewest violations, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RQ4 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;RRM domain, RBD, Activator, Alternative splicing, Cytoplasm, mRNA processing, Nucleus, Phosphoprotein, RNA-binding, TRANSCRIPTION, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 9 ? GLY A 14 ? THR A 384 GLY A 389 5 ? 6 HELX_P HELX_P2 2 GLY A 38 ? MET A 47 ? GLY A 413 MET A 422 1 ? 10 HELX_P HELX_P3 3 PRO A 48 ? GLY A 50 ? PRO A 423 GLY A 425 5 ? 3 HELX_P HELX_P4 4 ASN A 76 ? ASN A 88 ? ASN A 451 ASN A 463 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 52 ? ILE A 59 ? VAL A 427 ILE A 434 A 2 SER A 66 ? TYR A 74 ? SER A 441 TYR A 449 A 3 ASN A 27 ? TYR A 31 ? ASN A 402 TYR A 406 A 4 LYS A 98 ? LEU A 101 ? LYS A 473 LEU A 476 B 1 GLN A 91 ? ILE A 92 ? GLN A 466 ILE A 467 B 2 LYS A 95 ? ARG A 96 ? LYS A 470 ARG A 471 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 53 ? N VAL A 428 O SER A 73 ? O SER A 448 A 2 3 O VAL A 72 ? O VAL A 447 N LEU A 28 ? N LEU A 403 A 3 4 N TYR A 31 ? N TYR A 406 O LYS A 98 ? O LYS A 473 B 1 2 N ILE A 92 ? N ILE A 467 O LYS A 95 ? O LYS A 470 # _atom_sites.entry_id 2RQ4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 376 376 GLY GLY A . n A 1 2 SER 2 377 377 SER SER A . n A 1 3 SER 3 378 378 SER SER A . n A 1 4 GLY 4 379 379 GLY GLY A . n A 1 5 SER 5 380 380 SER SER A . n A 1 6 SER 6 381 381 SER SER A . n A 1 7 GLY 7 382 382 GLY GLY A . n A 1 8 LEU 8 383 383 LEU LEU A . n A 1 9 THR 9 384 384 THR THR A . n A 1 10 GLN 10 385 385 GLN GLN A . n A 1 11 GLN 11 386 386 GLN GLN A . n A 1 12 SER 12 387 387 SER SER A . n A 1 13 ILE 13 388 388 ILE ILE A . n A 1 14 GLY 14 389 389 GLY GLY A . n A 1 15 ALA 15 390 390 ALA ALA A . n A 1 16 ALA 16 391 391 ALA ALA A . n A 1 17 GLY 17 392 392 GLY GLY A . n A 1 18 SER 18 393 393 SER SER A . n A 1 19 GLN 19 394 394 GLN GLN A . n A 1 20 LYS 20 395 395 LYS LYS A . n A 1 21 GLU 21 396 396 GLU GLU A . n A 1 22 GLY 22 397 397 GLY GLY A . n A 1 23 PRO 23 398 398 PRO PRO A . n A 1 24 GLU 24 399 399 GLU GLU A . n A 1 25 GLY 25 400 400 GLY GLY A . n A 1 26 ALA 26 401 401 ALA ALA A . n A 1 27 ASN 27 402 402 ASN ASN A . n A 1 28 LEU 28 403 403 LEU LEU A . n A 1 29 PHE 29 404 404 PHE PHE A . n A 1 30 ILE 30 405 405 ILE ILE A . n A 1 31 TYR 31 406 406 TYR TYR A . n A 1 32 HIS 32 407 407 HIS HIS A . n A 1 33 LEU 33 408 408 LEU LEU A . n A 1 34 PRO 34 409 409 PRO PRO A . n A 1 35 GLN 35 410 410 GLN GLN A . n A 1 36 GLU 36 411 411 GLU GLU A . n A 1 37 PHE 37 412 412 PHE PHE A . n A 1 38 GLY 38 413 413 GLY GLY A . n A 1 39 ASP 39 414 414 ASP ASP A . n A 1 40 GLN 40 415 415 GLN GLN A . n A 1 41 ASP 41 416 416 ASP ASP A . n A 1 42 LEU 42 417 417 LEU LEU A . n A 1 43 LEU 43 418 418 LEU LEU A . n A 1 44 GLN 44 419 419 GLN GLN A . n A 1 45 MET 45 420 420 MET MET A . n A 1 46 PHE 46 421 421 PHE PHE A . n A 1 47 MET 47 422 422 MET MET A . n A 1 48 PRO 48 423 423 PRO PRO A . n A 1 49 PHE 49 424 424 PHE PHE A . n A 1 50 GLY 50 425 425 GLY GLY A . n A 1 51 ASN 51 426 426 ASN ASN A . n A 1 52 VAL 52 427 427 VAL VAL A . n A 1 53 VAL 53 428 428 VAL VAL A . n A 1 54 SER 54 429 429 SER SER A . n A 1 55 ALA 55 430 430 ALA ALA A . n A 1 56 LYS 56 431 431 LYS LYS A . n A 1 57 VAL 57 432 432 VAL VAL A . n A 1 58 PHE 58 433 433 PHE PHE A . n A 1 59 ILE 59 434 434 ILE ILE A . n A 1 60 ASP 60 435 435 ASP ASP A . n A 1 61 LYS 61 436 436 LYS LYS A . n A 1 62 GLN 62 437 437 GLN GLN A . n A 1 63 THR 63 438 438 THR THR A . n A 1 64 ASN 64 439 439 ASN ASN A . n A 1 65 LEU 65 440 440 LEU LEU A . n A 1 66 SER 66 441 441 SER SER A . n A 1 67 LYS 67 442 442 LYS LYS A . n A 1 68 CYS 68 443 443 CYS CYS A . n A 1 69 PHE 69 444 444 PHE PHE A . n A 1 70 GLY 70 445 445 GLY GLY A . n A 1 71 PHE 71 446 446 PHE PHE A . n A 1 72 VAL 72 447 447 VAL VAL A . n A 1 73 SER 73 448 448 SER SER A . n A 1 74 TYR 74 449 449 TYR TYR A . n A 1 75 ASP 75 450 450 ASP ASP A . n A 1 76 ASN 76 451 451 ASN ASN A . n A 1 77 PRO 77 452 452 PRO PRO A . n A 1 78 VAL 78 453 453 VAL VAL A . n A 1 79 SER 79 454 454 SER SER A . n A 1 80 ALA 80 455 455 ALA ALA A . n A 1 81 GLN 81 456 456 GLN GLN A . n A 1 82 ALA 82 457 457 ALA ALA A . n A 1 83 ALA 83 458 458 ALA ALA A . n A 1 84 ILE 84 459 459 ILE ILE A . n A 1 85 GLN 85 460 460 GLN GLN A . n A 1 86 SER 86 461 461 SER SER A . n A 1 87 MET 87 462 462 MET MET A . n A 1 88 ASN 88 463 463 ASN ASN A . n A 1 89 GLY 89 464 464 GLY GLY A . n A 1 90 PHE 90 465 465 PHE PHE A . n A 1 91 GLN 91 466 466 GLN GLN A . n A 1 92 ILE 92 467 467 ILE ILE A . n A 1 93 GLY 93 468 468 GLY GLY A . n A 1 94 MET 94 469 469 MET MET A . n A 1 95 LYS 95 470 470 LYS LYS A . n A 1 96 ARG 96 471 471 ARG ARG A . n A 1 97 LEU 97 472 472 LEU LEU A . n A 1 98 LYS 98 473 473 LYS LYS A . n A 1 99 VAL 99 474 474 VAL VAL A . n A 1 100 GLN 100 475 475 GLN GLN A . n A 1 101 LEU 101 476 476 LEU LEU A . n A 1 102 LYS 102 477 477 LYS LYS A . n A 1 103 ARG 103 478 478 ARG ARG A . n A 1 104 SER 104 479 479 SER SER A . n A 1 105 LYS 105 480 480 LYS LYS A . n A 1 106 ASN 106 481 481 ASN ASN A . n A 1 107 ASP 107 482 482 ASP ASP A . n A 1 108 SER 108 483 483 SER SER A . n A 1 109 LYS 109 484 484 LYS LYS A . n A 1 110 SER 110 485 485 SER SER A . n A 1 111 GLY 111 486 486 GLY GLY A . n A 1 112 PRO 112 487 487 PRO PRO A . n A 1 113 SER 113 488 488 SER SER A . n A 1 114 SER 114 489 489 SER SER A . n A 1 115 GLY 115 490 490 GLY GLY A . n # _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center RSGI _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_nmr_exptl_sample.component protein _pdbx_nmr_exptl_sample.concentration 1.37 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-100% 13C; U-100% 15N]' _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 377 ? ? 71.66 -0.47 2 1 SER A 387 ? ? -64.27 6.49 3 1 ASP A 482 ? ? -151.95 -33.13 4 2 GLN A 386 ? ? -141.39 -53.69 5 2 LYS A 484 ? ? -140.81 -21.23 6 3 LYS A 484 ? ? 76.36 133.29 7 4 SER A 380 ? ? -167.96 -46.25 8 4 ALA A 390 ? ? 67.87 -54.13 9 5 LEU A 383 ? ? -151.66 14.75 10 5 MET A 469 ? ? -141.05 16.16 11 6 SER A 381 ? ? 68.23 -167.73 12 6 GLN A 386 ? ? -145.69 11.22 13 6 ALA A 390 ? ? -156.51 -59.64 14 6 SER A 488 ? ? -166.66 -47.09 15 7 SER A 380 ? ? -157.54 6.29 16 7 LYS A 484 ? ? 52.77 -111.13 17 8 SER A 377 ? ? -165.74 -54.16 18 8 SER A 387 ? ? -79.70 48.87 19 8 ALA A 390 ? ? -170.27 -38.82 20 8 MET A 469 ? ? -140.78 24.45 21 8 ARG A 478 ? ? -162.30 33.18 22 8 SER A 483 ? ? -140.94 33.77 23 9 SER A 387 ? ? -159.81 40.45 24 9 SER A 479 ? ? -148.69 -46.75 25 9 LYS A 480 ? ? -149.29 -14.35 26 9 SER A 485 ? ? 69.40 -170.23 27 10 ASN A 439 ? ? 59.35 11.70 28 10 LYS A 480 ? ? -143.92 13.95 29 10 ASP A 482 ? ? -144.66 10.15 30 11 SER A 387 ? ? -66.44 0.59 31 11 ASN A 481 ? ? -157.88 40.37 32 11 SER A 483 ? ? -154.47 17.13 33 12 SER A 479 ? ? 68.03 78.42 34 13 SER A 377 ? ? 70.13 -34.23 35 13 GLN A 386 ? ? -155.36 25.07 36 13 ALA A 390 ? ? 65.83 -51.50 37 13 ASP A 482 ? ? 68.73 -42.91 38 14 ALA A 390 ? ? -166.19 -47.05 39 14 SER A 483 ? ? -153.07 -0.39 40 15 ALA A 390 ? ? 68.98 -40.36 41 15 SER A 479 ? ? -155.90 7.51 42 15 ASP A 482 ? ? -149.26 23.85 43 16 LEU A 383 ? ? 66.15 -179.17 44 16 ARG A 478 ? ? 65.02 167.46 45 16 ASP A 482 ? ? -144.82 16.65 46 16 LYS A 484 ? ? -78.61 36.17 47 17 THR A 384 ? ? 52.62 -90.39 48 17 GLN A 385 ? ? -141.85 14.93 49 18 SER A 381 ? ? 65.11 -0.66 50 19 SER A 387 ? ? -73.59 26.59 51 19 LYS A 480 ? ? -138.36 -42.32 52 19 LYS A 484 ? ? -144.47 -12.78 53 19 PRO A 487 ? ? -69.90 99.46 54 20 ALA A 390 ? ? 68.18 -60.10 #