HEADER TRANSCRIPTION 06-FEB-09 2RQ5 TITLE SOLUTION STRUCTURE OF THE AT-RICH INTERACTION DOMAIN (ARID) OF TITLE 2 JUMONJI/JARID2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN JUMONJI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARID DOMAIN, UNP RESIDUES 615-730; COMPND 5 SYNONYM: JUMONJI/ARID DOMAIN-CONTAINING PROTEIN 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: JMJ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P2 KEYWDS PROTEIN, DEVELOPMENTAL PROTEIN, NUCLEUS, REPRESSOR, TRANSCRIPTION, KEYWDS 2 TRANSCRIPTION REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.KUSUNOKI,T.KOHNO REVDAT 3 16-MAR-22 2RQ5 1 REMARK SEQADV REVDAT 2 01-SEP-09 2RQ5 1 JRNL REVDAT 1 09-JUN-09 2RQ5 0 JRNL AUTH H.KUSUNOKI,T.TAKEUCHI,T.KOHNO JRNL TITL SOLUTION STRUCTURE OF THE AT-RICH INTERACTION DOMAIN OF JRNL TITL 2 JUMONJI/JARID2 JRNL REF PROTEINS V. 76 1023 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19455710 JRNL DOI 10.1002/PROT.22449 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000150151. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 90 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.25-1.6 MM [U-15N] JMJ-ARID(615 REMARK 210 -730)-1, 90% H2O/10% D2O; 0.25- REMARK 210 1.6 MM [U-13C; U-15N] JMJ- REMARK 210 ARID(615-730)-2, 90% H2O/10% D2O; REMARK 210 0.25-1.6 MM [U-13C; U-15N] JMJ- REMARK 210 ARID(615-730)-3, 100% D2O; 0.25- REMARK 210 1.6 MM [U-10% 13C; U-15N] JMJ- REMARK 210 ARID(615-730)-4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D HNHA; 3D HNHB; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HCACO; 3D HN(CO)CA; REMARK 210 3D HNCA; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D C(CO)NH; 3D H(CCO)NH; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-13C NOESY; 2D HBCBCGCDHD; 2D REMARK 210 HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, TOPSPIN, NMRPIPE, REMARK 210 SPARKY, PIPP REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 614 31.84 -98.85 REMARK 500 1 ARG A 617 -143.85 -110.89 REMARK 500 1 GLU A 642 -79.90 -63.57 REMARK 500 1 LEU A 643 132.34 -178.37 REMARK 500 1 MET A 663 36.61 -95.46 REMARK 500 1 LYS A 673 81.77 49.71 REMARK 500 1 LYS A 674 20.18 -144.48 REMARK 500 1 ARG A 683 71.74 70.40 REMARK 500 1 TYR A 702 -78.21 -119.11 REMARK 500 2 SER A 614 69.17 61.75 REMARK 500 2 ARG A 617 134.59 59.33 REMARK 500 2 GLU A 642 -78.21 -71.61 REMARK 500 2 LEU A 643 128.37 -179.93 REMARK 500 2 LYS A 673 84.15 50.46 REMARK 500 2 LYS A 674 21.63 -148.73 REMARK 500 2 ARG A 683 71.79 71.66 REMARK 500 2 TYR A 702 -78.83 -118.44 REMARK 500 3 ARG A 617 -143.07 -115.25 REMARK 500 3 ARG A 618 147.24 70.41 REMARK 500 3 GLU A 642 -78.23 -72.39 REMARK 500 3 LEU A 643 138.54 -177.37 REMARK 500 3 LYS A 673 82.96 49.86 REMARK 500 3 LYS A 674 23.73 -142.73 REMARK 500 3 ARG A 683 71.77 68.84 REMARK 500 3 TYR A 702 -75.94 -117.57 REMARK 500 4 SER A 614 108.93 59.22 REMARK 500 4 GLU A 642 -73.67 -70.91 REMARK 500 4 LEU A 643 130.77 -179.73 REMARK 500 4 LYS A 673 84.81 48.56 REMARK 500 4 LYS A 674 22.90 -145.06 REMARK 500 4 ARG A 683 71.81 69.38 REMARK 500 4 TYR A 702 -78.99 -113.47 REMARK 500 5 SER A 614 43.88 -94.65 REMARK 500 5 ARG A 617 -146.00 -123.24 REMARK 500 5 GLU A 642 -79.49 -71.23 REMARK 500 5 LEU A 643 133.82 -178.36 REMARK 500 5 MET A 663 33.59 -96.16 REMARK 500 5 LYS A 673 83.43 49.07 REMARK 500 5 LYS A 674 22.70 -146.18 REMARK 500 5 ARG A 683 71.80 70.02 REMARK 500 5 TYR A 702 -75.94 -122.55 REMARK 500 6 SER A 614 91.24 60.59 REMARK 500 6 ARG A 617 -144.08 -119.53 REMARK 500 6 TRP A 619 178.60 -52.43 REMARK 500 6 GLU A 642 -76.18 -71.57 REMARK 500 6 LEU A 643 139.24 -179.75 REMARK 500 6 LYS A 673 84.18 48.92 REMARK 500 6 LYS A 674 22.16 -145.65 REMARK 500 6 ARG A 683 71.74 71.23 REMARK 500 6 TYR A 702 -74.83 -121.61 REMARK 500 REMARK 500 THIS ENTRY HAS 161 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINE METHOD: AUTHOR DETERMINED DBREF 2RQ5 A 615 730 UNP Q62315 JARD2_MOUSE 615 730 SEQADV 2RQ5 GLY A 610 UNP Q62315 EXPRESSION TAG SEQADV 2RQ5 PRO A 611 UNP Q62315 EXPRESSION TAG SEQADV 2RQ5 LEU A 612 UNP Q62315 EXPRESSION TAG SEQADV 2RQ5 GLY A 613 UNP Q62315 EXPRESSION TAG SEQADV 2RQ5 SER A 614 UNP Q62315 EXPRESSION TAG SEQRES 1 A 121 GLY PRO LEU GLY SER LEU GLY ARG ARG TRP GLY PRO ASN SEQRES 2 A 121 VAL GLN ARG LEU ALA CYS ILE LYS LYS HIS LEU ARG SER SEQRES 3 A 121 GLN GLY ILE THR MET ASP GLU LEU PRO LEU ILE GLY GLY SEQRES 4 A 121 CYS GLU LEU ASP LEU ALA CYS PHE PHE ARG LEU ILE ASN SEQRES 5 A 121 GLU MET GLY GLY MET GLN GLN VAL THR ASP LEU LYS LYS SEQRES 6 A 121 TRP ASN LYS LEU ALA ASP MET LEU ARG ILE PRO LYS THR SEQRES 7 A 121 ALA GLN ASP ARG LEU ALA LYS LEU GLN GLU ALA TYR CYS SEQRES 8 A 121 GLN TYR LEU LEU SER TYR ASP SER LEU SER PRO GLU GLU SEQRES 9 A 121 HIS ARG ARG LEU GLU LYS GLU VAL LEU MET GLU LYS GLU SEQRES 10 A 121 ILE LEU GLU LYS HELIX 1 1 PRO A 621 GLN A 636 1 16 HELIX 2 2 LEU A 653 GLU A 662 1 10 HELIX 3 3 MET A 666 ASP A 671 1 6 HELIX 4 4 TRP A 675 MET A 681 1 7 HELIX 5 5 ARG A 691 CYS A 700 1 10 HELIX 6 6 LEU A 703 SER A 708 1 6 HELIX 7 7 PRO A 711 GLU A 726 1 16 SHEET 1 A 2 LEU A 645 ILE A 646 0 SHEET 2 A 2 CYS A 649 GLU A 650 -1 O CYS A 649 N ILE A 646 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1