HEADER PROTEIN BINDING 12-MAR-09 2RQ9 TITLE SOLUTION STRUCTURE OF HUMAN ACIDIC FIBROBLAST GROWTH FACTOR (AFGF) IN TITLE 2 THE PRESENCE OF A PROTEIN STABILIZER NDSB-NEW COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARIN-BINDING GROWTH FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES IN UNP, 22-155; COMPND 5 SYNONYM: HBGF-1, ACIDIC FIBROBLAST GROWTH FACTOR, AFGF, BETA- COMPND 6 ENDOTHELIAL CELL GROWTH FACTOR, ECGF-BETA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: E. COLI CELL FREE PROTEIN SYNTHESIS; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-20B KEYWDS BETA-TREFOIL, ACETYLATION, ALTERNATIVE SPLICING, ANGIOGENESIS, KEYWDS 2 DEVELOPMENTAL PROTEIN, DIFFERENTIATION, GROWTH FACTOR, HEPARIN- KEYWDS 3 BINDING, MITOGEN, POLYMORPHISM, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.ENOMOTO,L.XIANG,T.ISHII,N.TOCHIO,K.HOSODA,Y.INOUE,N.NAMEKI, AUTHOR 2 K.WAKAMATSU REVDAT 2 16-MAR-22 2RQ9 1 REMARK SEQADV REVDAT 1 16-MAR-10 2RQ9 0 JRNL AUTH M.ENOMOTO,L.XIANG,T.ISHII,N.TOCHIO,K.HOSODA,Y.INOUE, JRNL AUTH 2 N.NAMEKI,K.WAKAMATSU JRNL TITL SOLUTION STRUCTURE OF HUMAN ACIDIC FIBROBLAST GROWTH FACTOR JRNL TITL 2 (AFGF) IN THE PRESENCE OF A PROTEIN STABILIZER NDSB-NEW JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0B, CYANA 1.0B REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1000150155. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 190 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM [U-99% 13C; U-99% 15N] REMARK 210 AFGF-1, 500MM NDSB-NEW-2, 25MM REMARK 210 SODIUM PHOSPHATE-3, 150MM NACL-4, REMARK 210 1MM DIOXANE-5, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XWINNMR, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 36 HG21 THR A 56 1.34 REMARK 500 O LEU A 21 HE22 GLN A 58 1.53 REMARK 500 O ASN A 75 H CYS A 78 1.56 REMARK 500 O ASN A 90 H PHE A 127 1.57 REMARK 500 H LYS A 107 O SER A 111 1.57 REMARK 500 O SER A 42 H TYR A 50 1.58 REMARK 500 O GLY A 105 H LYS A 113 1.58 REMARK 500 H PHE A 17 O THR A 29 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 72.50 49.07 REMARK 500 1 LYS A 5 87.01 -155.99 REMARK 500 1 SER A 12 -37.61 -34.44 REMARK 500 1 THR A 29 137.16 -170.92 REMARK 500 1 ARG A 30 42.04 -106.00 REMARK 500 1 HIS A 36 -40.49 -178.79 REMARK 500 1 ASP A 63 -163.04 -68.94 REMARK 500 1 ASN A 87 -2.94 81.50 REMARK 500 1 HIS A 88 54.86 72.96 REMARK 500 1 LYS A 95 -74.88 -64.86 REMARK 500 1 ARG A 114 141.24 -36.97 REMARK 500 1 PRO A 116 39.99 -74.97 REMARK 500 1 ARG A 117 18.00 -144.02 REMARK 500 1 SER A 133 117.06 62.66 REMARK 500 1 LEU A 136 -168.12 -55.48 REMARK 500 1 GLU A 137 83.39 42.63 REMARK 500 2 ASN A 2 86.60 -151.23 REMARK 500 2 LYS A 4 106.36 -173.64 REMARK 500 2 LYS A 5 85.53 -170.94 REMARK 500 2 SER A 12 -32.93 -36.97 REMARK 500 2 ARG A 30 48.54 -105.65 REMARK 500 2 SER A 33 -35.92 -39.29 REMARK 500 2 GLN A 38 89.78 -60.91 REMARK 500 2 GLU A 55 -79.25 -76.65 REMARK 500 2 ASP A 63 -159.80 -69.93 REMARK 500 2 GLU A 86 -179.83 -59.96 REMARK 500 2 HIS A 97 -90.88 -105.38 REMARK 500 2 ALA A 98 -63.24 69.06 REMARK 500 2 VAL A 104 -90.35 -61.29 REMARK 500 2 LYS A 107 -176.01 -52.11 REMARK 500 2 ARG A 114 146.96 -37.37 REMARK 500 2 PRO A 116 39.02 -75.03 REMARK 500 2 ARG A 117 17.64 -142.93 REMARK 500 2 SER A 133 138.49 62.17 REMARK 500 2 LEU A 136 -170.80 46.92 REMARK 500 2 GLU A 137 131.13 79.53 REMARK 500 2 HIS A 140 -53.30 -143.61 REMARK 500 2 HIS A 141 -68.04 71.32 REMARK 500 2 HIS A 142 176.50 67.63 REMARK 500 3 ASN A 2 169.17 57.49 REMARK 500 3 TYR A 3 37.40 -146.29 REMARK 500 3 LYS A 4 -76.03 -123.56 REMARK 500 3 LYS A 5 158.35 64.48 REMARK 500 3 SER A 12 -35.03 -35.60 REMARK 500 3 ARG A 30 53.94 -109.44 REMARK 500 3 GLN A 38 89.75 -55.98 REMARK 500 3 GLU A 55 -61.17 -104.70 REMARK 500 3 THR A 56 -64.36 -91.74 REMARK 500 3 ASN A 87 -89.18 173.68 REMARK 500 3 HIS A 88 38.47 177.05 REMARK 500 REMARK 500 THIS ENTRY HAS 358 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2RQ9 A 2 135 UNP P05230 FGF1_HUMAN 22 155 SEQADV 2RQ9 MET A 1 UNP P05230 EXPRESSION TAG SEQADV 2RQ9 LEU A 136 UNP P05230 EXPRESSION TAG SEQADV 2RQ9 GLU A 137 UNP P05230 EXPRESSION TAG SEQADV 2RQ9 HIS A 138 UNP P05230 EXPRESSION TAG SEQADV 2RQ9 HIS A 139 UNP P05230 EXPRESSION TAG SEQADV 2RQ9 HIS A 140 UNP P05230 EXPRESSION TAG SEQADV 2RQ9 HIS A 141 UNP P05230 EXPRESSION TAG SEQADV 2RQ9 HIS A 142 UNP P05230 EXPRESSION TAG SEQADV 2RQ9 HIS A 143 UNP P05230 EXPRESSION TAG SEQRES 1 A 143 MET ASN TYR LYS LYS PRO LYS LEU LEU TYR CYS SER ASN SEQRES 2 A 143 GLY GLY HIS PHE LEU ARG ILE LEU PRO ASP GLY THR VAL SEQRES 3 A 143 ASP GLY THR ARG ASP ARG SER ASP GLN HIS ILE GLN LEU SEQRES 4 A 143 GLN LEU SER ALA GLU SER VAL GLY GLU VAL TYR ILE LYS SEQRES 5 A 143 SER THR GLU THR GLY GLN TYR LEU ALA MET ASP THR ASP SEQRES 6 A 143 GLY LEU LEU TYR GLY SER GLN THR PRO ASN GLU GLU CYS SEQRES 7 A 143 LEU PHE LEU GLU ARG LEU GLU GLU ASN HIS TYR ASN THR SEQRES 8 A 143 TYR ILE SER LYS LYS HIS ALA GLU LYS ASN TRP PHE VAL SEQRES 9 A 143 GLY LEU LYS LYS ASN GLY SER CYS LYS ARG GLY PRO ARG SEQRES 10 A 143 THR HIS TYR GLY GLN LYS ALA ILE LEU PHE LEU PRO LEU SEQRES 11 A 143 PRO VAL SER SER ASP LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 75 GLU A 77 5 3 HELIX 2 2 ARG A 114 THR A 118 5 5 SHEET 1 A 2 LYS A 7 CYS A 11 0 SHEET 2 A 2 PHE A 127 PRO A 131 -1 O LEU A 130 N LEU A 8 SHEET 1 B 2 PHE A 17 LEU A 21 0 SHEET 2 B 2 THR A 25 THR A 29 -1 O THR A 29 N PHE A 17 SHEET 1 C 4 LEU A 39 ALA A 43 0 SHEET 2 C 4 GLU A 48 SER A 53 -1 O TYR A 50 N SER A 42 SHEET 3 C 4 LEU A 79 GLU A 85 -1 O PHE A 80 N VAL A 49 SHEET 4 C 4 TYR A 89 SER A 94 -1 O ILE A 93 N LEU A 81 SHEET 1 D 2 TYR A 59 MET A 62 0 SHEET 2 D 2 LEU A 68 SER A 71 -1 O TYR A 69 N ALA A 61 SHEET 1 E 2 GLY A 105 LEU A 106 0 SHEET 2 E 2 CYS A 112 LYS A 113 -1 O LYS A 113 N GLY A 105 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1