HEADER SUGAR BINDING PROTEIN 22-APR-09 2RQE TITLE SOLUTION STRUCTURE OF THE SILKWORM BGRP/GNBP3 N-TERMINAL DOMAIN TITLE 2 REVEALS THE MECHANISM FOR B-1,3-GLUCAN SPECIFIC RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-1,3-GLUCAN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-118; COMPND 5 SYNONYM: BGBP, BETA-1,3-GLUCAN RECOGNITION PROTEIN, BETAGRP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1 KEYWDS PROTEIN, BETA-1, 3-GLUCAN, GLYCOPROTEIN, IMMUNE RESPONSE, INNATE KEYWDS 2 IMMUNITY, SECRETED, SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TAKAHASI,M.OCHIAI,M.HORIUCHI,H.KUMETA,K.OGURA,M.ASHIDA,F.INAGAKI REVDAT 3 16-MAR-22 2RQE 1 REMARK SEQADV REVDAT 2 29-SEP-09 2RQE 1 JRNL REVDAT 1 23-JUN-09 2RQE 0 JRNL AUTH K.TAKAHASI,M.OCHIAI,M.HORIUCHI,H.KUMETA,K.OGURA,M.ASHIDA, JRNL AUTH 2 F.INAGAKI JRNL TITL SOLUTION STRUCTURE OF THE SILKWORM BETAGRP/GNBP3 N-TERMINAL JRNL TITL 2 DOMAIN REVEALS THE MECHANISM FOR BETA-1,3-GLUCAN-SPECIFIC JRNL TITL 3 RECOGNITION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 11679 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19561300 JRNL DOI 10.1073/PNAS.0901671106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000150160. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE-1, 100 MM REMARK 210 SODIUM CHLORIDE-2, 5 MM SODIUM REMARK 210 AZIDE-3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D (HCA)CO(CA)NH; REMARK 210 3D HNCAHA; 3D HBHA(CO)NH; 2D 1H- REMARK 210 13C HSQC; 3D C(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-TOCSY; 3D CCH-TOCSY; REMARK 210 2D (HB)CB(CGCD)HD; 3D 15N-EDITED REMARK 210 NOESY; 3D 13C-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 3 141.06 66.67 REMARK 500 1 GLU A 9 -165.61 -79.80 REMARK 500 1 HIS A 12 172.37 -53.79 REMARK 500 1 PRO A 13 20.02 -69.79 REMARK 500 1 ASN A 35 34.88 36.47 REMARK 500 1 LEU A 41 81.04 36.88 REMARK 500 1 LYS A 52 135.66 171.22 REMARK 500 1 PRO A 53 -175.57 -69.70 REMARK 500 1 ASN A 55 15.14 82.68 REMARK 500 1 ARG A 63 10.96 -143.49 REMARK 500 1 ILE A 69 115.87 -32.14 REMARK 500 1 PHE A 75 -159.44 -163.68 REMARK 500 1 ARG A 87 137.82 -170.86 REMARK 500 1 ASN A 90 -36.87 82.92 REMARK 500 1 GLU A 92 113.43 -168.74 REMARK 500 1 GLU A 96 34.05 -147.10 REMARK 500 2 ALA A 3 147.25 62.06 REMARK 500 2 HIS A 12 172.53 -54.07 REMARK 500 2 PRO A 13 19.91 -69.80 REMARK 500 2 HIS A 31 85.76 -153.27 REMARK 500 2 ASN A 35 28.88 47.57 REMARK 500 2 LEU A 41 86.50 50.81 REMARK 500 2 HIS A 45 -65.27 -100.68 REMARK 500 2 LYS A 52 131.78 163.45 REMARK 500 2 PRO A 53 -176.00 -69.74 REMARK 500 2 LYS A 54 -35.98 -139.04 REMARK 500 2 ARG A 63 10.83 -140.89 REMARK 500 2 ILE A 69 122.72 -33.01 REMARK 500 2 ASP A 71 -176.64 -63.36 REMARK 500 2 PHE A 75 -160.97 -164.60 REMARK 500 2 ARG A 87 130.35 -178.42 REMARK 500 2 GLN A 88 -171.19 -65.29 REMARK 500 2 ASP A 89 -169.80 -170.37 REMARK 500 2 ASN A 90 -36.64 83.01 REMARK 500 2 GLU A 92 117.49 -168.18 REMARK 500 2 GLU A 101 46.79 -79.27 REMARK 500 3 ALA A 3 147.32 59.38 REMARK 500 3 HIS A 12 171.63 -53.92 REMARK 500 3 PRO A 13 19.70 -69.79 REMARK 500 3 ASN A 35 32.53 37.04 REMARK 500 3 LEU A 41 78.71 45.58 REMARK 500 3 HIS A 45 -68.74 -100.67 REMARK 500 3 TRP A 46 97.47 -58.02 REMARK 500 3 THR A 51 30.46 -95.90 REMARK 500 3 LYS A 52 138.62 173.99 REMARK 500 3 PRO A 53 -175.47 -69.73 REMARK 500 3 LYS A 54 -71.56 -118.47 REMARK 500 3 ILE A 69 116.95 -31.44 REMARK 500 3 PHE A 75 -161.38 -165.44 REMARK 500 3 ASP A 82 27.80 49.05 REMARK 500 REMARK 500 THIS ENTRY HAS 365 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2RQE A 1 102 UNP Q9NL89 BGBP_BOMMO 17 118 SEQADV 2RQE GLY A -3 UNP Q9NL89 EXPRESSION TAG SEQADV 2RQE PRO A -2 UNP Q9NL89 EXPRESSION TAG SEQADV 2RQE HIS A -1 UNP Q9NL89 EXPRESSION TAG SEQADV 2RQE MET A 0 UNP Q9NL89 EXPRESSION TAG SEQRES 1 A 106 GLY PRO HIS MET TYR GLU ALA PRO PRO ALA THR LEU GLU SEQRES 2 A 106 ALA ILE HIS PRO LYS GLY LEU ARG VAL SER VAL PRO ASP SEQRES 3 A 106 GLU GLY PHE SER LEU PHE ALA PHE HIS GLY LYS LEU ASN SEQRES 4 A 106 GLU GLU MET GLU GLY LEU GLU ALA GLY HIS TRP SER ARG SEQRES 5 A 106 ASP ILE THR LYS PRO LYS ASN GLY ARG TRP ILE PHE ARG SEQRES 6 A 106 ASP ARG ASN ALA ALA LEU LYS ILE GLY ASP LYS ILE TYR SEQRES 7 A 106 PHE TRP THR PHE VAL ILE LYS ASP GLY LEU GLY TYR ARG SEQRES 8 A 106 GLN ASP ASN GLY GLU TRP THR VAL GLU GLY PHE VAL ASP SEQRES 9 A 106 GLU ALA SHEET 1 A 3 THR A 7 LEU A 8 0 SHEET 2 A 3 VAL A 18 PRO A 21 -1 O SER A 19 N THR A 7 SHEET 3 A 3 ARG A 57 TRP A 58 -1 O TRP A 58 N VAL A 20 SHEET 1 B 4 ARG A 48 ILE A 50 0 SHEET 2 B 4 PHE A 25 HIS A 31 -1 N PHE A 30 O ARG A 48 SHEET 3 B 4 TRP A 76 LYS A 81 -1 O PHE A 78 N ALA A 29 SHEET 4 B 4 TYR A 86 GLN A 88 -1 O TYR A 86 N VAL A 79 SHEET 1 C 2 LYS A 72 ILE A 73 0 SHEET 2 C 2 TRP A 93 THR A 94 -1 O TRP A 93 N ILE A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1