HEADER HORMONE BINDING PROTEIN 27-APR-09 2RQF TITLE SOLUTION STRUCTURE OF JUVENILE HORMONE BINDING PROTEIN FROM SILKWORM TITLE 2 IN COMPLEX WITH JH III COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOLYMPH JUVENILE HORMONE BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-243; COMPND 5 SYNONYM: HJHBP; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE NUMBERING IN THE PDB FILE AND THE CONSTRAINT FILES COMPND 8 ARE DIFFER. THIS IS BECAUSE THE PROGRAM SPARKY DOES NOT ACCEPT MINUS COMPND 9 RESIDUE NUMBERS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH,SILKWORM; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-2T KEYWDS JUVENILE HORMONE, HORMONE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.SUZUKI,Z.FUJIMOTO,T.SHIOTSUKI,M.MOMMA,A.TASE,T.YAMAZAKI REVDAT 3 19-JUN-13 2RQF 1 JRNL REVDAT 2 15-FEB-12 2RQF 1 JRNL VERSN REVDAT 1 05-MAY-10 2RQF 0 JRNL AUTH R.SUZUKI,Z.FUJIMOTO,T.SHIOTSUKI,W.TSUCHIYA,M.MOMMA,A.TASE, JRNL AUTH 2 M.MIYAZAWA,T.YAMAZAKI JRNL TITL STRUCTURAL MECHANISM OF JH DELIVERY IN HEMOLYMPH BY JHBP OF JRNL TITL 2 SILKWORM, BOMBYX MORI JRNL REF SCI REP V. 1 133 2011 JRNL REFN ESSN 2045-2322 JRNL PMID 22355650 JRNL DOI 10.1038/SREP00133 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.SUZUKI,A.TASE,Z.FUJIMOTO,T.SHIOTSUKI,T.YAMAZAKI REMARK 1 TITL NMR ASSIGNMENTS OF JUVENILE HORMONE BINDING PROTEIN IN REMARK 1 TITL 2 COMPLEX WITH JH III REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-09. REMARK 100 THE RCSB ID CODE IS RCSB150161. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6-1.0 MM [U-15N] HJHBP-1, 0.6- REMARK 210 1.0 MM JH III-2, 45 MM SODIUM REMARK 210 PHOSPHATE-3, 90 % H2O-4, 10 % D2O REMARK 210 -5, 90% H2O/10% D2O; 0.6-1.0 MM REMARK 210 [U-13C; U-15N] HJHBP-6, 0.6-1.0 REMARK 210 MM JH III-7, 45 MM SODIUM REMARK 210 PHOSPHATE-8, 90 % H2O-9, 10 % D2O REMARK 210 -10, 90% H2O/10% D2O; 0.6-1.0 MM REMARK 210 [U-13C; U-15N] HJHBP-11, 0.6-1.0 REMARK 210 MM JH III-12, 45 MM SODIUM REMARK 210 PHOSPHATE-13, 100 % D2O-14, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D HNCA; REMARK 210 3D HCABGCO; 3D HCCH-TOCSY; 3D 15N REMARK 210 -SEPARATED HOHAHA-HSQC; 3D 15N- REMARK 210 SEPARATED NOESY-HSQC; 3D 13C/15N- REMARK 210 SEPARATED NOESY-HSQC; 3D 13C- REMARK 210 SEPARATED NOESY-HSQC; 3D 13C/13C- REMARK 210 SEPARATED NOESY-HSQC; 2D 13C- REMARK 210 FILTERED COSY; 2D 13C-FILTERED REMARK 210 NOESY; 3D 13C-FILTERED/13C- REMARK 210 SELECTED NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, NMRPIPE RELEASED AT REMARK 210 FEB 10, 2006, SPARKY 3.113, TALOS REMARK 210 2003.027.13.05, CYANA 2.1, AQUA REMARK 210 3.2, PROCHECKNMR 3.5.4 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 5 -50.23 -144.98 REMARK 500 1 ASP A 41 102.97 -170.96 REMARK 500 1 ASP A 135 -162.83 -62.39 REMARK 500 1 GLN A 140 97.28 -56.10 REMARK 500 1 CYS A 151 150.74 -48.76 REMARK 500 1 GLU A 152 -63.42 -128.43 REMARK 500 1 SER A 177 9.81 -152.70 REMARK 500 1 LEU A 178 88.48 42.02 REMARK 500 1 ASP A 181 55.51 -112.43 REMARK 500 1 GLU A 183 141.75 66.95 REMARK 500 1 GLN A 190 -66.75 -105.38 REMARK 500 1 PRO A 216 -177.94 -69.75 REMARK 500 1 ASN A 223 116.86 -169.40 REMARK 500 2 ALA A 4 110.86 179.11 REMARK 500 2 TYR A 35 25.23 -141.63 REMARK 500 2 PHE A 78 118.57 -162.26 REMARK 500 2 ASP A 135 -164.13 -61.37 REMARK 500 2 GLN A 140 99.48 -54.61 REMARK 500 2 SER A 177 9.78 -153.18 REMARK 500 2 LEU A 178 88.26 41.61 REMARK 500 2 ASP A 181 55.45 -111.60 REMARK 500 2 GLU A 183 142.19 66.69 REMARK 500 2 GLN A 190 -70.38 -108.74 REMARK 500 2 ASN A 223 113.68 -165.41 REMARK 500 3 ASP A 3 30.33 -171.45 REMARK 500 3 ALA A 4 -69.67 -173.67 REMARK 500 3 LEU A 5 -73.17 66.06 REMARK 500 3 TYR A 35 20.35 -153.94 REMARK 500 3 ASP A 41 107.00 -160.82 REMARK 500 3 ASP A 135 -165.59 -60.79 REMARK 500 3 GLN A 140 97.58 -56.02 REMARK 500 3 THR A 150 87.41 -151.23 REMARK 500 3 CYS A 151 153.49 -47.93 REMARK 500 3 GLU A 152 -62.42 -132.96 REMARK 500 3 ILE A 154 13.37 -142.92 REMARK 500 3 SER A 177 11.86 -155.83 REMARK 500 3 LEU A 178 87.44 37.85 REMARK 500 3 ASP A 181 55.67 -113.72 REMARK 500 3 GLU A 183 142.88 66.78 REMARK 500 3 PRO A 216 -179.44 -69.74 REMARK 500 3 PHE A 220 -60.00 -94.82 REMARK 500 3 ASN A 223 114.24 -177.68 REMARK 500 4 ASP A 3 21.02 -154.11 REMARK 500 4 ALA A 4 -65.03 -174.03 REMARK 500 4 LEU A 5 -71.43 67.84 REMARK 500 4 ASP A 41 108.88 -166.50 REMARK 500 4 ASP A 135 -165.68 -60.81 REMARK 500 4 GLN A 140 97.34 -50.14 REMARK 500 4 GLU A 152 -59.10 -125.27 REMARK 500 4 THR A 160 99.48 -160.01 REMARK 500 REMARK 500 THIS ENTRY HAS 285 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JH3 A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16021 RELATED DB: BMRB REMARK 900 RELATED ID: 3AOS RELATED DB: PDB REMARK 900 RELATED ID: 3AOT RELATED DB: PDB DBREF 2RQF A 1 225 UNP Q9U556 Q9U556_BOMMO 19 243 SEQADV 2RQF GLY A -2 UNP Q9U556 EXPRESSION TAG SEQADV 2RQF SER A -1 UNP Q9U556 EXPRESSION TAG SEQRES 1 A 227 GLY SER ASP GLY ASP ALA LEU LEU LYS PRO CYS LYS LEU SEQRES 2 A 227 GLY ASP MET GLN CYS LEU SER SER ALA THR GLU GLN PHE SEQRES 3 A 227 LEU GLU LYS THR SER LYS GLY ILE PRO GLN TYR ASP ILE SEQRES 4 A 227 TRP PRO ILE ASP PRO LEU VAL VAL THR SER LEU ASP VAL SEQRES 5 A 227 ILE ALA PRO SER ASP ALA GLY ILE VAL ILE ARG PHE LYS SEQRES 6 A 227 ASN LEU ASN ILE THR GLY LEU LYS ASN GLN GLN ILE SER SEQRES 7 A 227 ASP PHE GLN MET ASP THR LYS ALA LYS THR VAL LEU LEU SEQRES 8 A 227 LYS THR LYS ALA ASP LEU HIS ILE VAL GLY ASP ILE VAL SEQRES 9 A 227 ILE GLU LEU THR GLU GLN SER LYS SER PHE THR GLY LEU SEQRES 10 A 227 TYR THR ALA ASP THR ASN VAL ILE GLY ALA VAL ARG TYR SEQRES 11 A 227 GLY TYR ASN LEU LYS ASN ASP ASP ASN GLY VAL GLN HIS SEQRES 12 A 227 PHE GLU VAL GLN PRO GLU THR PHE THR CYS GLU SER ILE SEQRES 13 A 227 GLY GLU PRO LYS ILE THR LEU SER SER ASP LEU SER SER SEQRES 14 A 227 ALA LEU GLU LYS ASP SER GLY ASN ASN SER LEU GLU PRO SEQRES 15 A 227 ASP MET GLU PRO LEU LYS THR LEU ARG GLN ALA ALA ILE SEQRES 16 A 227 CYS LYS ILE ALA GLU ALA CYS TYR ILE SER VAL VAL HIS SEQRES 17 A 227 ASN ILE ARG ALA SER ALA LYS ILE LEU PRO ALA SER SER SEQRES 18 A 227 PHE PHE GLU ASN LEU ASN HET JH3 A 300 45 HETNAM JH3 METHYL (2E,6E)-9-[(2R)-3,3-DIMETHYLOXIRAN-2-YL]-3,7- HETNAM 2 JH3 DIMETHYLNONA-2,6-DIENOATE HETSYN JH3 JH III, JUVENILE HORMONE III FORMUL 2 JH3 C16 H26 O3 HELIX 1 1 ASP A 13 SER A 29 1 17 HELIX 2 2 SER A 162 GLY A 174 1 13 HELIX 3 3 PRO A 184 GLN A 190 1 7 HELIX 4 4 GLN A 190 LEU A 215 1 26 SHEET 1 A 3 LEU A 43 VAL A 45 0 SHEET 2 A 3 ILE A 58 THR A 68 -1 O ILE A 67 N LEU A 43 SHEET 3 A 3 LEU A 48 ILE A 51 -1 N LEU A 48 O PHE A 62 SHEET 1 B 5 LEU A 43 VAL A 45 0 SHEET 2 B 5 ILE A 58 THR A 68 -1 O ILE A 67 N LEU A 43 SHEET 3 B 5 THR A 86 LEU A 105 -1 O ASP A 100 N LYS A 63 SHEET 4 B 5 LYS A 110 ASN A 134 -1 O TYR A 116 N GLY A 99 SHEET 5 B 5 LYS A 158 LEU A 161 -1 O LYS A 158 N ASP A 119 SHEET 1 C 4 LEU A 48 ILE A 51 0 SHEET 2 C 4 ILE A 58 THR A 68 -1 O PHE A 62 N LEU A 48 SHEET 3 C 4 GLN A 74 ASP A 81 0 SHEET 4 C 4 THR A 86 LEU A 105 -1 O THR A 86 N ASP A 81 SHEET 1 D 4 GLN A 74 ASP A 81 0 SHEET 2 D 4 THR A 86 LEU A 105 -1 O THR A 86 N ASP A 81 SHEET 3 D 4 LYS A 110 ASN A 134 -1 O TYR A 116 N GLY A 99 SHEET 4 D 4 THR A 148 SER A 153 -1 O THR A 150 N ALA A 125 SHEET 1 E 3 THR A 148 SER A 153 0 SHEET 2 E 3 LYS A 110 ASN A 134 -1 N ALA A 125 O THR A 150 SHEET 3 E 3 GLN A 140 VAL A 144 -1 O GLU A 143 N ASN A 131 SSBOND 1 CYS A 9 CYS A 16 1555 1555 2.13 SSBOND 2 CYS A 151 CYS A 194 1555 1555 2.13 CISPEP 1 ASP A 41 PRO A 42 1 0.09 CISPEP 2 GLU A 183 PRO A 184 1 0.00 CISPEP 3 ASP A 41 PRO A 42 2 0.10 CISPEP 4 GLU A 183 PRO A 184 2 -0.02 CISPEP 5 ASP A 41 PRO A 42 3 0.07 CISPEP 6 GLU A 183 PRO A 184 3 -0.02 CISPEP 7 ASP A 41 PRO A 42 4 0.09 CISPEP 8 GLU A 183 PRO A 184 4 -0.02 CISPEP 9 ASP A 41 PRO A 42 5 0.09 CISPEP 10 GLU A 183 PRO A 184 5 0.01 CISPEP 11 ASP A 41 PRO A 42 6 0.01 CISPEP 12 GLU A 183 PRO A 184 6 -0.02 CISPEP 13 ASP A 41 PRO A 42 7 -0.04 CISPEP 14 GLU A 183 PRO A 184 7 0.04 CISPEP 15 ASP A 41 PRO A 42 8 -0.02 CISPEP 16 GLU A 183 PRO A 184 8 0.00 CISPEP 17 ASP A 41 PRO A 42 9 -0.03 CISPEP 18 GLU A 183 PRO A 184 9 -0.06 CISPEP 19 ASP A 41 PRO A 42 10 0.01 CISPEP 20 GLU A 183 PRO A 184 10 -0.01 CISPEP 21 ASP A 41 PRO A 42 11 -0.04 CISPEP 22 GLU A 183 PRO A 184 11 -0.06 CISPEP 23 ASP A 41 PRO A 42 12 0.02 CISPEP 24 GLU A 183 PRO A 184 12 -0.06 CISPEP 25 ASP A 41 PRO A 42 13 -0.04 CISPEP 26 GLU A 183 PRO A 184 13 0.06 CISPEP 27 ASP A 41 PRO A 42 14 0.04 CISPEP 28 GLU A 183 PRO A 184 14 0.01 CISPEP 29 ASP A 41 PRO A 42 15 0.00 CISPEP 30 GLU A 183 PRO A 184 15 -0.01 CISPEP 31 ASP A 41 PRO A 42 16 -0.02 CISPEP 32 GLU A 183 PRO A 184 16 -0.06 CISPEP 33 ASP A 41 PRO A 42 17 0.00 CISPEP 34 GLU A 183 PRO A 184 17 0.05 CISPEP 35 ASP A 41 PRO A 42 18 0.00 CISPEP 36 GLU A 183 PRO A 184 18 -0.08 CISPEP 37 ASP A 41 PRO A 42 19 -0.03 CISPEP 38 GLU A 183 PRO A 184 19 0.00 CISPEP 39 ASP A 41 PRO A 42 20 -0.01 CISPEP 40 GLU A 183 PRO A 184 20 -0.07 SITE 1 AC1 7 LEU A 17 THR A 21 LEU A 89 TYR A 128 SITE 2 AC1 7 PHE A 142 ILE A 208 PHE A 220 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1