HEADER TRANSLATION 13-AUG-09 2RQL TITLE SOLUTION STRUCTURE OF THE E. COLI RIBOSOME HIBERNATION PROMOTING TITLE 2 FACTOR HPF COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SIGMA-54 MODULATION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIBERNATION PROMOTING FACTOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: HPF, ECS4082; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE9 KEYWDS RIBOSOME HIBERNATION PROMOTING FACTOR, HPF, RIBOSOME, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.SATO,M.MISHIMA REVDAT 3 29-MAY-24 2RQL 1 REMARK REVDAT 2 16-MAR-22 2RQL 1 REMARK REVDAT 1 02-FEB-10 2RQL 0 JRNL AUTH A.SATO,T.WATANABE,Y.MAKI,M.UETA,H.YOSHIDA,Y.ITO,A.WADA, JRNL AUTH 2 M.MISHIMA JRNL TITL SOLUTION STRUCTURE OF THE E. COLI RIBOSOME HIBERNATION JRNL TITL 2 PROMOTING FACTOR HPF: IMPLICATIONS FOR THE RELATIONSHIP JRNL TITL 3 BETWEEN STRUCTURE AND FUNCTION. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 389 580 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19747895 JRNL DOI 10.1016/J.BBRC.2009.09.022 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 3.0, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000150167. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 15N] ENTITY_1-1, 50 REMARK 210 MM POTASSIUM PHOSPHATE-2, 20 MM REMARK 210 POTASSIUM CHLORIDE-3, 93% H2O/7% REMARK 210 D2O; 1 MM [U-99% 13C; U-99% 15N] REMARK 210 ENTITY_1-4, 50 MM POTASSIUM REMARK 210 PHOSPHATE-5, 20 MM POTASSIUM REMARK 210 CHLORIDE-6, 93% H2O/7% D2O; 1 MM REMARK 210 [U-99% 13C; U-99% 15N] ENTITY_1- REMARK 210 7, 50 MM POTASSIUM PHOSPHATE-8, REMARK 210 20 MM POTASSIUM CHLORIDE-9, 100% REMARK 210 D2O; 1 MM [U-99% 13C; U-99% 15N] REMARK 210 ENTITY_1-10, 50 MM POTASSIUM REMARK 210 PHOSPHATE-11, 20 MM POTASSIUM REMARK 210 CHLORIDE-12, 15 MG/ML PF1 PHAGE- REMARK 210 13, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D CBCANH; 3D HN(CA)CO; 3D HNCO; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 4D REMARK 210 H(CCO)NH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D HNHB; 3D HN(CO)HB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, SPARKY 3.113 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 14 -36.31 -38.30 REMARK 500 1 ARG A 33 57.78 -100.29 REMARK 500 1 VAL A 46 -84.89 -85.36 REMARK 500 1 ASN A 57 104.12 -59.95 REMARK 500 1 LEU A 92 -71.65 -65.51 REMARK 500 1 LYS A 93 86.33 -66.72 REMARK 500 2 ILE A 12 95.69 -66.97 REMARK 500 2 GLU A 14 -34.12 -37.58 REMARK 500 2 ASN A 35 -58.70 -128.55 REMARK 500 2 VAL A 46 -128.22 -89.31 REMARK 500 3 ASN A 9 45.22 70.53 REMARK 500 3 VAL A 46 -84.07 -84.69 REMARK 500 3 GLN A 94 99.40 -59.67 REMARK 500 4 ASN A 9 -43.21 85.44 REMARK 500 4 VAL A 46 -85.96 -86.55 REMARK 500 4 GLN A 68 -23.37 179.73 REMARK 500 4 LEU A 92 44.91 -94.63 REMARK 500 5 GLN A 2 -155.91 -140.90 REMARK 500 5 ASN A 9 30.28 70.52 REMARK 500 5 GLU A 14 -33.48 -38.36 REMARK 500 5 ASN A 35 -58.94 -123.57 REMARK 500 5 VAL A 46 -85.23 -87.72 REMARK 500 5 ASN A 57 105.00 -59.32 REMARK 500 5 LEU A 92 36.23 -96.43 REMARK 500 6 GLN A 2 -86.43 -167.25 REMARK 500 6 ASN A 9 44.66 71.57 REMARK 500 6 ARG A 33 62.18 -112.33 REMARK 500 6 ASN A 35 -62.73 -121.99 REMARK 500 6 VAL A 46 -84.37 -84.50 REMARK 500 6 ASN A 57 -73.69 -47.06 REMARK 500 6 GLN A 94 38.80 171.34 REMARK 500 7 ASN A 9 34.66 72.21 REMARK 500 7 ARG A 33 50.74 -90.45 REMARK 500 7 VAL A 46 -85.53 -90.63 REMARK 500 7 ASN A 57 -94.89 39.77 REMARK 500 8 ASN A 9 38.13 72.62 REMARK 500 8 VAL A 46 -83.49 -85.57 REMARK 500 8 ASN A 57 -95.07 39.65 REMARK 500 8 GLN A 94 33.35 -142.27 REMARK 500 9 GLN A 2 59.76 -93.01 REMARK 500 9 GLU A 14 -38.30 -38.06 REMARK 500 9 ASN A 35 -57.56 -124.70 REMARK 500 9 VAL A 46 -84.29 -84.63 REMARK 500 9 LEU A 92 -73.37 -72.95 REMARK 500 9 LYS A 93 -78.06 64.80 REMARK 500 10 GLN A 2 76.73 -101.69 REMARK 500 10 GLU A 14 -35.53 -37.34 REMARK 500 10 VAL A 46 -84.80 -88.24 REMARK 500 11 ASN A 9 41.61 70.51 REMARK 500 11 ARG A 33 69.09 -69.72 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2RQL A 1 95 UNP Q2KHI5 Q2KHI5_ECOLX 1 95 SEQRES 1 A 95 MET GLN LEU ASN ILE THR GLY ASN ASN VAL GLU ILE THR SEQRES 2 A 95 GLU ALA LEU ARG GLU PHE VAL THR ALA LYS PHE ALA LYS SEQRES 3 A 95 LEU GLU GLN TYR PHE ASP ARG ILE ASN GLN VAL TYR VAL SEQRES 4 A 95 VAL LEU LYS VAL GLU LYS VAL THR HIS THR SER ASP ALA SEQRES 5 A 95 THR LEU HIS VAL ASN GLY GLY GLU ILE HIS ALA SER ALA SEQRES 6 A 95 GLU GLY GLN ASP MET TYR ALA ALA ILE ASP GLY LEU ILE SEQRES 7 A 95 ASP LYS LEU ALA ARG GLN LEU THR LYS HIS LYS ASP LYS SEQRES 8 A 95 LEU LYS GLN HIS HELIX 1 1 THR A 13 GLN A 29 1 17 HELIX 2 2 ASP A 69 LYS A 93 1 25 SHEET 1 A 4 GLN A 2 ASN A 8 0 SHEET 2 A 4 GLN A 36 VAL A 43 1 O VAL A 37 N ASN A 4 SHEET 3 A 4 HIS A 48 VAL A 56 -1 O THR A 49 N LYS A 42 SHEET 4 A 4 GLY A 59 GLY A 67 -1 O ALA A 63 N ALA A 52 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1