HEADER PROTEIN BINDING 21-OCT-09 2RQR TITLE THE SOLUTION STRUCTURE OF HUMAN DOCK2 SH3 DOMAIN - ELMO1 PEPTIDE TITLE 2 CHIMERA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENGULFMENT AND CELL MOTILITY PROTEIN 1,DEDICATOR OF COMPND 3 CYTOKINESIS PROTEIN 2; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PROTEIN CED-12 HOMOLOG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ELMO1, KIAA0281, DOCK2, KIAA0209; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P070313-06 KEYWDS KIAA0209, KIAA0281, APOPTOSIS, MEMBRANE, PHAGOCYTOSIS, KEYWDS 2 PHOSPHOPROTEIN, SH3-BINDING, CYTOSKELETON, GUANINE-NUCLEOTIDE KEYWDS 3 RELEASING FACTOR, SH3 DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 5 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.YOKOYAMA,N.TOCHIO,S.KOSHIBA,T.KIGAWA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 01-MAY-24 2RQR 1 REMARK REVDAT 3 22-JAN-20 2RQR 1 COMPND SOURCE SEQADV REVDAT 2 04-SEP-19 2RQR 1 JRNL REMARK REVDAT 1 27-OCT-10 2RQR 0 JRNL AUTH K.HANAWA-SUETSUGU,M.KUKIMOTO-NIINO,C.MISHIMA-TSUMAGARI, JRNL AUTH 2 R.AKASAKA,N.OHSAWA,S.SEKINE,T.ITO,N.TOCHIO,S.KOSHIBA, JRNL AUTH 3 T.KIGAWA,T.TERADA,M.SHIROUZU,A.NISHIKIMI,T.URUNO,T.KATAKAI, JRNL AUTH 4 T.KINASHI,D.KOHDA,Y.FUKUI,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR MUTUAL RELIEF OF THE RAC GUANINE JRNL TITL 2 NUCLEOTIDE EXCHANGE FACTOR DOCK2 AND ITS PARTNER ELMO1 FROM JRNL TITL 3 THEIR AUTOINHIBITED FORMS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 3305 2012 JRNL REFN ESSN 1091-6490 JRNL PMID 22331897 JRNL DOI 10.1073/PNAS.1113512109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), GUNTERT, MUMENTHALER, REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000150173. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20MM [U-2H] TRIS-2, REMARK 210 100MM SODIUM CHLORIDE-3, 0.02% REMARK 210 SODIUM AZIDE-4, 1MM [U-2H] DTT-5, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, KUJIRA, CYANA REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 14 116.06 -165.61 REMARK 500 1 ILE A 24 138.66 -34.42 REMARK 500 1 SER A 29 173.90 -57.24 REMARK 500 1 ASN A 30 106.01 -42.39 REMARK 500 1 TYR A 31 151.07 -43.39 REMARK 500 1 ASP A 57 49.20 -85.68 REMARK 500 1 ALA A 73 153.78 -40.29 REMARK 500 2 SER A 2 104.33 -37.15 REMARK 500 2 ARG A 8 144.84 -173.80 REMARK 500 2 LEU A 12 38.30 -87.64 REMARK 500 2 ASN A 14 105.29 -165.10 REMARK 500 2 PRO A 25 -173.22 -69.82 REMARK 500 2 ASN A 30 109.50 -34.95 REMARK 500 2 ASP A 32 97.59 -54.17 REMARK 500 2 SER A 48 42.92 36.75 REMARK 500 2 ASP A 57 42.26 -106.66 REMARK 500 2 ALA A 73 151.26 -38.69 REMARK 500 2 ASP A 92 43.45 -88.94 REMARK 500 2 HIS A 101 107.57 -162.87 REMARK 500 3 ASP A 11 109.03 -166.73 REMARK 500 3 GLU A 13 146.99 -36.21 REMARK 500 3 GLN A 16 37.09 -90.50 REMARK 500 3 PRO A 25 -174.29 -69.78 REMARK 500 3 TYR A 31 150.66 -44.98 REMARK 500 3 PHE A 33 35.61 -84.91 REMARK 500 3 PRO A 36 0.22 -69.70 REMARK 500 3 ALA A 73 152.94 -35.60 REMARK 500 3 ASP A 92 41.52 -93.08 REMARK 500 3 VAL A 118 -58.22 -120.49 REMARK 500 4 ASP A 11 112.62 -175.09 REMARK 500 4 GLN A 16 44.89 -89.18 REMARK 500 4 PRO A 18 -172.68 -69.81 REMARK 500 4 SER A 29 48.31 -82.94 REMARK 500 4 ASN A 30 108.91 -174.99 REMARK 500 4 SER A 34 53.20 35.05 REMARK 500 4 ALA A 73 152.01 -40.13 REMARK 500 4 GLU A 117 48.46 -100.03 REMARK 500 5 SER A 2 -61.64 -123.55 REMARK 500 5 SER A 6 119.70 -37.95 REMARK 500 5 ARG A 8 41.81 -82.46 REMARK 500 5 ASP A 11 112.58 -175.20 REMARK 500 5 LEU A 12 42.81 -87.28 REMARK 500 5 ILE A 24 138.68 -39.82 REMARK 500 5 GLU A 27 139.47 -36.91 REMARK 500 5 TYR A 31 138.01 -36.47 REMARK 500 5 ILE A 40 130.52 -34.79 REMARK 500 5 SER A 46 -62.03 -124.32 REMARK 500 5 SER A 51 42.32 -87.11 REMARK 500 5 ASP A 57 117.07 -172.90 REMARK 500 5 ALA A 73 153.58 -37.81 REMARK 500 REMARK 500 THIS ENTRY HAS 240 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2RQR A 8 33 UNP Q92556 ELMO1_HUMAN 697 722 DBREF 2RQR A 57 119 UNP Q92608 DOCK2_HUMAN 8 70 SEQADV 2RQR GLY A 1 UNP Q92556 EXPRESSION TAG SEQADV 2RQR SER A 2 UNP Q92556 EXPRESSION TAG SEQADV 2RQR SER A 3 UNP Q92556 EXPRESSION TAG SEQADV 2RQR GLY A 4 UNP Q92556 EXPRESSION TAG SEQADV 2RQR SER A 5 UNP Q92556 EXPRESSION TAG SEQADV 2RQR SER A 6 UNP Q92556 EXPRESSION TAG SEQADV 2RQR GLY A 7 UNP Q92556 EXPRESSION TAG SEQADV 2RQR SER A 34 UNP Q92556 LINKER SEQADV 2RQR GLY A 35 UNP Q92556 LINKER SEQADV 2RQR PRO A 36 UNP Q92556 LINKER SEQADV 2RQR SER A 37 UNP Q92556 LINKER SEQADV 2RQR SER A 38 UNP Q92556 LINKER SEQADV 2RQR GLY A 39 UNP Q92556 LINKER SEQADV 2RQR ILE A 40 UNP Q92556 LINKER SEQADV 2RQR GLU A 41 UNP Q92556 LINKER SEQADV 2RQR GLY A 42 UNP Q92556 LINKER SEQADV 2RQR ARG A 43 UNP Q92556 LINKER SEQADV 2RQR GLY A 44 UNP Q92556 LINKER SEQADV 2RQR SER A 45 UNP Q92556 LINKER SEQADV 2RQR SER A 46 UNP Q92556 LINKER SEQADV 2RQR GLY A 47 UNP Q92556 LINKER SEQADV 2RQR SER A 48 UNP Q92556 LINKER SEQADV 2RQR SER A 49 UNP Q92556 LINKER SEQADV 2RQR GLY A 50 UNP Q92556 LINKER SEQADV 2RQR SER A 51 UNP Q92556 LINKER SEQADV 2RQR SER A 52 UNP Q92556 LINKER SEQADV 2RQR GLY A 53 UNP Q92556 LINKER SEQADV 2RQR SER A 54 UNP Q92556 LINKER SEQADV 2RQR SER A 55 UNP Q92556 LINKER SEQADV 2RQR GLY A 56 UNP Q92556 LINKER SEQRES 1 A 119 GLY SER SER GLY SER SER GLY ARG LEU LEU ASP LEU GLU SEQRES 2 A 119 ASN ILE GLN ILE PRO ASP ALA PRO PRO PRO ILE PRO LYS SEQRES 3 A 119 GLU PRO SER ASN TYR ASP PHE SER GLY PRO SER SER GLY SEQRES 4 A 119 ILE GLU GLY ARG GLY SER SER GLY SER SER GLY SER SER SEQRES 5 A 119 GLY SER SER GLY ASP LYS GLU ARG HIS GLY VAL ALA ILE SEQRES 6 A 119 TYR ASN PHE GLN GLY SER GLY ALA PRO GLN LEU SER LEU SEQRES 7 A 119 GLN ILE GLY ASP VAL VAL ARG ILE GLN GLU THR CYS GLY SEQRES 8 A 119 ASP TRP TYR ARG GLY TYR LEU ILE LYS HIS LYS MET LEU SEQRES 9 A 119 GLN GLY ILE PHE PRO LYS SER PHE ILE HIS ILE LYS GLU SEQRES 10 A 119 VAL THR HELIX 1 1 SER A 111 ILE A 113 5 3 SHEET 1 A 4 ARG A 60 VAL A 63 0 SHEET 2 A 4 VAL A 83 CYS A 90 -1 O ILE A 86 N ARG A 60 SHEET 3 A 4 TRP A 93 LEU A 98 -1 O TRP A 93 N CYS A 90 SHEET 4 A 4 GLN A 105 PRO A 109 -1 O PHE A 108 N TYR A 94 CISPEP 1 ALA A 73 PRO A 74 1 0.01 CISPEP 2 ALA A 73 PRO A 74 2 -0.02 CISPEP 3 ALA A 73 PRO A 74 3 0.02 CISPEP 4 ALA A 73 PRO A 74 4 -0.04 CISPEP 5 ALA A 73 PRO A 74 5 -0.01 CISPEP 6 ALA A 73 PRO A 74 6 0.08 CISPEP 7 ALA A 73 PRO A 74 7 -0.01 CISPEP 8 ALA A 73 PRO A 74 8 0.01 CISPEP 9 ALA A 73 PRO A 74 9 0.00 CISPEP 10 ALA A 73 PRO A 74 10 -0.04 CISPEP 11 ALA A 73 PRO A 74 11 0.03 CISPEP 12 ALA A 73 PRO A 74 12 0.01 CISPEP 13 ALA A 73 PRO A 74 13 0.02 CISPEP 14 ALA A 73 PRO A 74 14 0.10 CISPEP 15 ALA A 73 PRO A 74 15 -0.03 CISPEP 16 ALA A 73 PRO A 74 16 0.03 CISPEP 17 ALA A 73 PRO A 74 17 -0.01 CISPEP 18 ALA A 73 PRO A 74 18 0.07 CISPEP 19 ALA A 73 PRO A 74 19 -0.04 CISPEP 20 ALA A 73 PRO A 74 20 0.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1