data_2RQZ # _entry.id 2RQZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2RQZ RCSB RCSB150181 WWPDB D_1000150181 BMRB 11006 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 1TOZ PDB 'human NOTCH-1 ligand binding region' unspecified 2JOA PDB 'the PDZ domains of human HtrA1 and HtrA3' unspecified 2RR0 PDB 'epidermal growth factor-like repeat 12 of mouse Notch-1 receptor' unspecified 2RR2 PDB 'O-fucosylated epidermal growth factor-like repeat 12 of mouse Notch-1 receptor' unspecified 11006 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RQZ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-02-26 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shimizu, K.' 1 'Fujitani, N.' 2 'Hosoguchi, K.' 3 'Nishimura, S.' 4 # _citation.id primary _citation.title ;Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 132 _citation.page_first 14857 _citation.page_last 14865 _citation.year 2010 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20883017 _citation.pdbx_database_id_DOI 10.1021/ja105216u # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hiruma-Shimizu, K.' 1 ? primary 'Hosoguchi, K.' 2 ? primary 'Liu, Y.' 3 ? primary 'Fujitani, N.' 4 ? primary 'Ohta, T.' 5 ? primary 'Hinou, H.' 6 ? primary 'Matsushita, T.' 7 ? primary 'Shimizu, H.' 8 ? primary 'Feizi, T.' 9 ? primary 'Nishimura, S.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Neurogenic locus notch homolog protein 1' 4218.697 1 ? ? 'EXTRACELLULAR DOMAIN EGF-LIKE repeat 12' ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose' 367.349 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Notch 1, Motch A, mT14, p300' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI _entity_poly.pdbx_seq_one_letter_code_can DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 VAL n 1 3 ASN n 1 4 GLU n 1 5 CYS n 1 6 ILE n 1 7 SER n 1 8 ASN n 1 9 PRO n 1 10 CYS n 1 11 GLN n 1 12 ASN n 1 13 ASP n 1 14 ALA n 1 15 THR n 1 16 CYS n 1 17 LEU n 1 18 ASP n 1 19 GLN n 1 20 ILE n 1 21 GLY n 1 22 GLU n 1 23 PHE n 1 24 GLN n 1 25 CYS n 1 26 ILE n 1 27 CYS n 1 28 MET n 1 29 PRO n 1 30 GLY n 1 31 TYR n 1 32 GLU n 1 33 GLY n 1 34 VAL n 1 35 TYR n 1 36 CYS n 1 37 GLU n 1 38 ILE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Mus musculus' _pdbx_entity_src_syn.organism_common_name MOUSE _pdbx_entity_src_syn.ncbi_taxonomy_id 10090 _pdbx_entity_src_syn.details 'synthetic peptide' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NOTC1_MOUSE _struct_ref.pdbx_db_accession Q01705 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCEI _struct_ref.pdbx_align_begin 452 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RQZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 38 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q01705 _struct_ref_seq.db_align_beg 452 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 489 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 38 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D DQF-COSY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D 1H-1H NOESY' 1 4 2 '2D 1H-1H TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.pH 5.3 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 300 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.55mM NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; 0.55mM SUGAR (2-MER); 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.55mM NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; 0.55mM SUGAR (2-MER); 100% D2O' 2 '100% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'BRUKER AVANCE' # _pdbx_nmr_refine.entry_id 2RQZ _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details 'Both sugar rings were fixed in chair conformation.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2RQZ _pdbx_nmr_details.text 'The structure was determined using a combination NOE and D2O exchange experiment.' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RQZ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RQZ _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_software.authors ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CNS _pdbx_nmr_software.version 1.1 _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2RQZ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RQZ _struct.title 'Structure of sugar modified epidermal growth factor-like repeat 12 of mouse Notch-1 receptor' _struct.pdbx_descriptor 'Neurogenic locus notch homolog protein 1' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RQZ _struct_keywords.pdbx_keywords RECEPTOR _struct_keywords.text ;NOTCH, GLYCOPEPTIDE, O-LINKED FUCOSE, ACTIVATOR, FRINGE, ANK REPEAT, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, EGF-LIKE DOMAIN, GLYCOPROTEIN, METAL-BINDING, NOTCH SIGNALING PATHWAY, NUCLEUS, PHOSPHORYLATION, RECEPTOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSMEMBRANE, Cell membrane, Disulfide bond, Phosphoprotein ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 5 A CYS 16 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 25 SG ? ? A CYS 10 A CYS 25 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 27 SG ? ? ? 1_555 A CYS 36 SG ? ? A CYS 27 A CYS 36 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale one ? A THR 15 OG1 ? ? ? 1_555 B FUC . C1 ? ? A THR 15 B FUC 1 1_555 ? ? ? ? ? ? ? 1.386 ? O-Glycosylation covale2 covale both ? B FUC . O3 ? ? ? 1_555 B NAG . C1 ? ? B FUC 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.384 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 15 ? ASP A 18 ? THR A 15 ASP A 18 A 2 PHE A 23 ? ILE A 26 ? PHE A 23 ILE A 26 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id THR _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 15 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id THR _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 15 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 26 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 26 # _atom_sites.entry_id 2RQZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 MET 28 28 28 MET MET A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ILE 38 38 38 ILE ILE A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id THR _pdbx_struct_mod_residue.label_seq_id 15 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id THR _pdbx_struct_mod_residue.auth_seq_id 15 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id THR _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-10-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-26 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 4 'Structure model' 'Atomic model' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_conn 6 4 'Structure model' atom_site 7 4 'Structure model' chem_comp 8 4 'Structure model' entity 9 4 'Structure model' pdbx_branch_scheme 10 4 'Structure model' pdbx_chem_comp_identifier 11 4 'Structure model' pdbx_entity_branch 12 4 'Structure model' pdbx_entity_branch_descriptor 13 4 'Structure model' pdbx_entity_branch_link 14 4 'Structure model' pdbx_entity_branch_list 15 4 'Structure model' pdbx_entity_nonpoly 16 4 'Structure model' pdbx_nonpoly_scheme 17 4 'Structure model' pdbx_struct_assembly_gen 18 4 'Structure model' struct_asym 19 4 'Structure model' struct_conn 20 4 'Structure model' struct_site 21 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.type' 2 3 'Structure model' '_pdbx_database_status.status_code_cs' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_seq_id' 7 4 'Structure model' '_atom_site.label_asym_id' 8 4 'Structure model' '_atom_site.label_entity_id' 9 4 'Structure model' '_chem_comp.name' 10 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 11 4 'Structure model' '_struct_conn.pdbx_role' 12 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1-1' 0.55 ? mM ? 1 'SUGAR (2-MER)-2' 0.55 ? mM ? 1 'NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1-3' 0.55 ? mM ? 2 'SUGAR (2-MER)-4' 0.55 ? mM ? 2 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 2 ? ? 63.24 145.30 2 1 ILE A 6 ? ? -102.71 -66.81 3 1 SER A 7 ? ? -109.02 56.02 4 1 ASN A 8 ? ? 56.93 90.88 5 1 ASN A 12 ? ? -150.00 20.05 6 1 ASP A 13 ? ? 70.66 43.62 7 1 CYS A 36 ? ? 52.86 80.63 8 1 GLU A 37 ? ? -152.41 -44.45 9 2 ILE A 6 ? ? -102.51 -67.13 10 2 SER A 7 ? ? -108.85 54.56 11 2 ASN A 8 ? ? 53.69 93.06 12 2 ASP A 13 ? ? 74.12 56.35 13 2 GLN A 19 ? ? -137.87 -77.30 14 2 ILE A 20 ? ? -146.69 -46.64 15 2 TYR A 35 ? ? -98.42 30.04 16 2 CYS A 36 ? ? 57.55 70.09 17 2 GLU A 37 ? ? -154.82 26.16 18 3 ILE A 6 ? ? -107.73 -66.77 19 3 SER A 7 ? ? -109.40 55.60 20 3 ASN A 8 ? ? 58.42 88.62 21 3 ASN A 12 ? ? -150.06 17.48 22 3 ASP A 13 ? ? 71.15 60.17 23 3 GLN A 19 ? ? -141.49 -50.70 24 3 ILE A 20 ? ? -144.80 -66.99 25 3 CYS A 36 ? ? 53.14 93.16 26 3 GLU A 37 ? ? -170.42 -39.34 27 4 ASN A 3 ? ? -130.07 -46.12 28 4 GLU A 4 ? ? -139.56 -67.42 29 4 SER A 7 ? ? -108.45 55.26 30 4 ASN A 8 ? ? 53.71 87.06 31 4 CYS A 10 ? ? -59.99 171.50 32 4 ASN A 12 ? ? -149.54 19.69 33 4 ASP A 13 ? ? 72.63 43.19 34 4 ILE A 20 ? ? -140.99 -75.71 35 4 CYS A 36 ? ? 55.53 92.42 36 4 GLU A 37 ? ? -169.49 -41.04 37 5 GLU A 4 ? ? -129.95 -79.27 38 5 ILE A 6 ? ? -108.09 -65.97 39 5 SER A 7 ? ? -108.30 54.44 40 5 ASN A 8 ? ? 53.95 89.08 41 5 ASN A 12 ? ? -149.77 17.06 42 5 ASP A 13 ? ? 72.19 59.92 43 5 GLN A 19 ? ? -113.66 -78.08 44 5 CYS A 36 ? ? 49.24 85.83 45 5 GLU A 37 ? ? -158.80 -43.90 46 6 SER A 7 ? ? -107.44 55.88 47 6 ASN A 8 ? ? 58.52 96.33 48 6 ASN A 12 ? ? -148.66 17.70 49 6 ASP A 13 ? ? 70.04 50.32 50 7 GLU A 4 ? ? -150.05 -54.83 51 7 ILE A 6 ? ? -122.45 -68.42 52 7 SER A 7 ? ? -109.25 51.53 53 7 ASN A 8 ? ? 46.55 87.74 54 7 CYS A 10 ? ? -58.20 173.62 55 7 ASN A 12 ? ? -149.01 19.76 56 7 ASP A 13 ? ? 69.05 63.83 57 7 GLN A 19 ? ? -121.05 -57.32 58 7 CYS A 36 ? ? 51.77 78.68 59 7 GLU A 37 ? ? -155.88 27.39 60 8 ASN A 3 ? ? 60.33 170.90 61 8 GLU A 4 ? ? -120.57 -78.15 62 8 ILE A 6 ? ? -101.80 -66.06 63 8 SER A 7 ? ? -106.39 56.71 64 8 ASN A 8 ? ? 57.22 95.78 65 8 ASP A 13 ? ? 72.59 66.38 66 8 ASP A 18 ? ? 59.24 161.30 67 8 CYS A 36 ? ? 49.18 94.08 68 8 GLU A 37 ? ? -169.94 -39.06 69 9 ASN A 3 ? ? -176.62 141.49 70 9 SER A 7 ? ? -107.99 55.80 71 9 ASN A 8 ? ? 57.83 91.08 72 9 ASP A 13 ? ? 73.76 56.40 73 9 GLN A 19 ? ? -130.42 -46.05 74 9 MET A 28 ? ? -56.47 171.01 75 9 CYS A 36 ? ? 54.85 89.47 76 9 GLU A 37 ? ? -171.97 -39.75 77 10 ASN A 3 ? ? -161.92 77.43 78 10 GLU A 4 ? ? -128.73 -81.87 79 10 CYS A 5 ? ? -150.13 77.43 80 10 ILE A 6 ? ? -102.93 -67.21 81 10 SER A 7 ? ? -110.82 55.59 82 10 ASN A 8 ? ? 57.56 91.96 83 10 GLN A 11 ? ? -97.58 34.49 84 10 ASN A 12 ? ? -149.37 13.83 85 10 ASP A 13 ? ? 70.53 55.86 86 11 ILE A 6 ? ? -109.92 -69.16 87 11 SER A 7 ? ? -114.37 54.90 88 11 ASN A 8 ? ? 56.01 88.61 89 11 CYS A 10 ? ? -58.83 171.39 90 11 ASN A 12 ? ? -145.32 16.28 91 11 LEU A 17 ? ? -138.03 -47.47 92 11 ASP A 18 ? ? 56.05 103.50 93 11 GLN A 19 ? ? -133.38 -46.57 94 11 GLU A 37 ? ? -97.64 31.47 95 12 VAL A 2 ? ? 62.06 83.30 96 12 GLU A 4 ? ? -89.93 -74.86 97 12 ILE A 6 ? ? -121.99 -66.90 98 12 SER A 7 ? ? -110.42 55.41 99 12 ASN A 8 ? ? 57.09 94.49 100 12 ASN A 12 ? ? -147.00 15.26 101 12 ASP A 13 ? ? 71.09 60.40 102 12 LEU A 17 ? ? -62.70 86.70 103 12 GLN A 19 ? ? -149.97 -47.49 104 12 CYS A 36 ? ? 52.30 97.29 105 12 GLU A 37 ? ? -168.89 -38.46 106 13 ASN A 3 ? ? -170.95 -66.64 107 13 GLU A 4 ? ? -132.72 -43.07 108 13 ILE A 6 ? ? -128.19 -65.66 109 13 SER A 7 ? ? -99.35 53.32 110 13 ASN A 8 ? ? 52.74 89.61 111 13 GLN A 11 ? ? -96.28 30.94 112 13 ASN A 12 ? ? -149.21 12.80 113 13 ASP A 13 ? ? 69.48 66.28 114 13 CYS A 36 ? ? 54.10 100.27 115 13 GLU A 37 ? ? -174.54 -38.23 116 14 VAL A 2 ? ? 64.10 112.04 117 14 GLU A 4 ? ? -120.09 -78.62 118 14 ILE A 6 ? ? -108.98 -66.46 119 14 SER A 7 ? ? -107.36 55.86 120 14 ASN A 8 ? ? 56.08 88.76 121 14 ASN A 12 ? ? -146.83 15.14 122 14 ASP A 13 ? ? 72.11 50.26 123 14 GLN A 19 ? ? -102.87 -77.88 124 14 ILE A 20 ? ? -141.52 -66.47 125 15 ASN A 3 ? ? -160.40 95.92 126 15 GLU A 4 ? ? -135.75 -80.27 127 15 ILE A 6 ? ? -94.89 -69.95 128 15 SER A 7 ? ? -116.05 55.17 129 15 ASN A 8 ? ? 55.16 91.30 130 15 ASN A 12 ? ? -146.43 14.14 131 15 GLN A 19 ? ? -95.89 -76.57 132 15 ILE A 20 ? ? -145.28 -46.55 133 16 GLU A 4 ? ? -126.38 -79.67 134 16 ILE A 6 ? ? -102.09 -75.72 135 16 SER A 7 ? ? -107.97 55.91 136 16 ASN A 8 ? ? 59.15 90.26 137 16 ASN A 12 ? ? -146.13 17.19 138 17 ILE A 6 ? ? -101.59 -67.70 139 17 SER A 7 ? ? -106.64 53.57 140 17 ASN A 8 ? ? 49.44 91.72 141 17 CYS A 10 ? ? -49.50 151.37 142 17 ASN A 12 ? ? -149.60 17.83 143 17 GLN A 19 ? ? -139.86 -77.03 144 17 ILE A 20 ? ? -123.93 -67.43 145 17 CYS A 36 ? ? 52.17 100.24 146 17 GLU A 37 ? ? -173.84 -33.14 147 18 VAL A 2 ? ? -64.62 93.18 148 18 GLU A 4 ? ? -140.38 -79.42 149 18 ILE A 6 ? ? -106.14 -77.82 150 18 SER A 7 ? ? -102.90 53.97 151 18 ASN A 8 ? ? 53.40 86.30 152 18 CYS A 10 ? ? -56.97 177.37 153 18 ASN A 12 ? ? -146.36 15.75 154 18 ASP A 13 ? ? 70.23 49.68 155 18 GLN A 19 ? ? -118.75 -80.37 156 18 ILE A 20 ? ? -129.20 -68.31 157 18 CYS A 36 ? ? 49.84 84.81 158 18 GLU A 37 ? ? -157.31 -42.62 159 19 VAL A 2 ? ? 64.47 159.30 160 19 ASN A 3 ? ? 62.56 101.36 161 19 GLU A 4 ? ? -107.10 -73.12 162 19 CYS A 5 ? ? -150.12 71.11 163 19 ILE A 6 ? ? -99.67 -77.74 164 19 SER A 7 ? ? -93.37 55.49 165 19 ASN A 8 ? ? 53.06 92.93 166 19 ASN A 12 ? ? -149.18 18.34 167 19 ASP A 13 ? ? 71.83 50.43 168 19 GLN A 19 ? ? -107.79 -165.81 169 19 CYS A 36 ? ? 49.82 88.00 170 19 GLU A 37 ? ? -162.62 -43.19 171 20 GLU A 4 ? ? -139.00 -59.87 172 20 ILE A 6 ? ? -114.81 -76.51 173 20 SER A 7 ? ? -98.69 55.34 174 20 ASN A 8 ? ? 53.44 90.05 175 20 ASN A 12 ? ? -149.88 18.65 176 20 ASP A 13 ? ? 70.61 48.95 177 20 GLN A 19 ? ? -124.88 -62.15 178 20 ILE A 20 ? ? -93.87 -67.73 179 20 MET A 28 ? ? -58.67 172.78 180 20 CYS A 36 ? ? 51.66 92.38 181 20 GLU A 37 ? ? -162.29 -37.37 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 FUC 1 B FUC 1 B FUC 39 n B 2 NAG 2 B NAG 2 B NAG 40 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-3LFucpa1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(3+1)][a-L-Fucp]{[(3+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 FUC _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 FUC 1 n 2 NAG 2 n #