HEADER RECEPTOR 26-FEB-10 2RR2 TITLE STRUCTURE OF O-FUCOSYLATED EPIDERMAL GROWTH FACTOR-LIKE REPEAT 12 OF TITLE 2 MOUSE NOTCH-1 RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN EGF-LIKE REPEAT 12; COMPND 5 SYNONYM: NOTCH 1, MOTCH A, MT14, P300; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 4 ORGANISM_COMMON: MOUSE; SOURCE 5 ORGANISM_TAXID: 10090; SOURCE 6 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS NOTCH, GLYCOPEPTIDE, O-LINKED FUCOSE, FRINGE, EGF-LIKE DOMAIN, KEYWDS 2 ACTIVATOR, ANK REPEAT, CELL MEMBRANE, DEVELOPMENTAL PROTEIN, KEYWDS 3 DIFFERENTIATION, DISULFIDE BOND, GLYCOPROTEIN, METAL-BINDING, NOTCH KEYWDS 4 SIGNALING PATHWAY, NUCLEUS, PHOSPHOPROTEIN, RECEPTOR, TRANSCRIPTION, KEYWDS 5 TRANSCRIPTION REGULATION, TRANSMEMBRANE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.HOSOGUCHI,K.SHIMIZU,N.FUJITANI,S.NISHIMURA REVDAT 3 29-JUL-20 2RR2 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 03-NOV-10 2RR2 1 JRNL REVDAT 1 13-OCT-10 2RR2 0 JRNL AUTH K.HIRUMA-SHIMIZU,K.HOSOGUCHI,Y.LIU,N.FUJITANI,T.OHTA, JRNL AUTH 2 H.HINOU,T.MATSUSHITA,H.SHIMIZU,T.FEIZI,S.NISHIMURA JRNL TITL CHEMICAL SYNTHESIS, FOLDING, AND STRUCTURAL INSIGHTS INTO JRNL TITL 2 O-FUCOSYLATED EPIDERMAL GROWTH FACTOR-LIKE REPEAT 12 OF JRNL TITL 3 MOUSE NOTCH-1 RECEPTOR JRNL REF J.AM.CHEM.SOC. V. 132 14857 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20883017 JRNL DOI 10.1021/JA105216U REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SUGAR RING WAS FIXED IN CHAIR REMARK 3 CONFORMATION. REMARK 4 REMARK 4 2RR2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000150183. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.3 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.67MM NEUROGENIC LOCUS NOTCH REMARK 210 HOMOLOG PROTEIN 1; 0.67MM ALPHA- REMARK 210 L-FUCOSE; 90% H2O/10% D2O; REMARK 210 0.67MM NEUROGENIC LOCUS NOTCH REMARK 210 HOMOLOG PROTEIN 1; 0.67MM ALPHA- REMARK 210 L-FUCOSE; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H NOESY; 2D REMARK 210 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION NOE AND REMARK 210 D2O EXCHANGE EXPERIMENT. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 3 86.99 60.57 REMARK 500 1 SER A 7 52.56 -141.98 REMARK 500 1 ASN A 8 118.32 61.62 REMARK 500 1 GLN A 11 44.06 -91.74 REMARK 500 1 ASP A 13 39.25 -90.02 REMARK 500 1 LEU A 17 80.38 -172.20 REMARK 500 1 ILE A 20 70.58 -68.87 REMARK 500 1 PHE A 23 103.17 -176.00 REMARK 500 1 CYS A 27 -167.64 -60.79 REMARK 500 1 PRO A 29 93.97 -55.65 REMARK 500 1 CYS A 36 75.97 46.91 REMARK 500 2 VAL A 2 79.93 -100.33 REMARK 500 2 ASN A 3 -46.11 -160.47 REMARK 500 2 SER A 7 52.66 -143.39 REMARK 500 2 ASN A 8 119.63 62.29 REMARK 500 2 GLN A 11 43.76 -91.82 REMARK 500 2 ASP A 13 38.49 -89.85 REMARK 500 2 LEU A 17 66.69 -157.29 REMARK 500 2 ILE A 20 103.98 -56.30 REMARK 500 2 PHE A 23 113.71 -177.54 REMARK 500 2 CYS A 27 -168.01 -59.26 REMARK 500 2 PRO A 29 95.27 -50.73 REMARK 500 2 CYS A 36 98.17 52.09 REMARK 500 2 GLU A 37 -39.51 -166.71 REMARK 500 3 GLU A 4 42.55 -100.27 REMARK 500 3 ASN A 8 107.15 -52.34 REMARK 500 3 GLN A 11 42.57 -96.02 REMARK 500 3 ASP A 13 41.33 -89.94 REMARK 500 3 ILE A 20 85.28 52.70 REMARK 500 3 CYS A 36 104.59 57.85 REMARK 500 3 GLU A 37 -33.88 -168.28 REMARK 500 4 ASN A 8 108.15 -54.38 REMARK 500 4 GLN A 11 43.14 -96.75 REMARK 500 4 ASP A 13 38.25 -91.02 REMARK 500 4 PRO A 29 88.82 -53.22 REMARK 500 4 CYS A 36 102.56 56.33 REMARK 500 4 GLU A 37 -34.43 -177.67 REMARK 500 5 GLN A 11 43.85 -92.29 REMARK 500 5 ASP A 13 44.62 -89.83 REMARK 500 5 CYS A 36 97.27 47.48 REMARK 500 5 GLU A 37 -35.88 -173.92 REMARK 500 6 SER A 7 55.42 -144.20 REMARK 500 6 ASN A 8 114.76 61.38 REMARK 500 6 GLN A 11 44.84 -92.36 REMARK 500 6 ASP A 13 37.88 -89.84 REMARK 500 6 LEU A 17 61.99 -110.26 REMARK 500 6 ILE A 20 105.91 -58.82 REMARK 500 6 CYS A 36 97.07 50.43 REMARK 500 6 GLU A 37 -33.71 -171.74 REMARK 500 7 VAL A 2 79.22 -113.51 REMARK 500 REMARK 500 THIS ENTRY HAS 168 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TOZ RELATED DB: PDB REMARK 900 HUMAN NOTCH-1 LIGAND BINDING REGION REMARK 900 RELATED ID: 2JOA RELATED DB: PDB REMARK 900 THE PDZ DOMAINS OF HUMAN HTRA1 AND HTRA3 REMARK 900 RELATED ID: 2RQZ RELATED DB: PDB REMARK 900 SUGAR MODIFIED EPIDERMAL GROWTH FACTOR-LIKE REPEAT 12 OF MOUSE REMARK 900 NOTCH-1 RECEPTOR REMARK 900 RELATED ID: 2RR0 RELATED DB: PDB REMARK 900 EPIDERMAL GROWTH FACTOR-LIKE REPEAT 12 OF MOUSE NOTCH-1 RECEPTOR DBREF 2RR2 A 1 38 UNP Q01705 NOTC1_MOUSE 452 489 SEQRES 1 A 38 ASP VAL ASN GLU CYS ILE SER ASN PRO CYS GLN ASN ASP SEQRES 2 A 38 ALA THR CYS LEU ASP GLN ILE GLY GLU PHE GLN CYS ILE SEQRES 3 A 38 CYS MET PRO GLY TYR GLU GLY VAL TYR CYS GLU ILE MODRES 2RR2 THR A 15 THR GLYCOSYLATION SITE HET FUC A 39 21 HETNAM FUC ALPHA-L-FUCOPYRANOSE FORMUL 2 FUC C6 H12 O5 SHEET 1 A 2 THR A 15 ASP A 18 0 SHEET 2 A 2 PHE A 23 ILE A 26 -1 O ILE A 26 N THR A 15 SSBOND 1 CYS A 5 CYS A 16 1555 1555 2.03 SSBOND 2 CYS A 10 CYS A 25 1555 1555 2.03 SSBOND 3 CYS A 27 CYS A 36 1555 1555 2.03 LINK OG1 THR A 15 C1 FUC A 39 1555 1555 1.38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1