HEADER DNA BINDING PROTEIN 19-JUL-10 2RRD TITLE STRUCTURE OF HRDC DOMAIN FROM HUMAN BLOOM SYNDROME PROTEIN, BLM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HRDC DOMAIN FROM BLOOM SYNDROME PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BLM HRDC DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BLM, RECQ2, RECQL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-5X-1 KEYWDS DNA HELICASE, RECQ FAMILY, BLOOM SYNDROME PROTEIN, HRDC DOMAIN, DNA KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.SATO,M.MISHIMA,A.NAGAI,S.Y.KIM,Y.ITO,T.HAKOSHIMA,J.G.JEE,K.KITANO REVDAT 2 20-OCT-10 2RRD 1 JRNL REVDAT 1 08-SEP-10 2RRD 0 JRNL AUTH A.SATO,M.MISHIMA,A.NAGAI,S.Y.KIM,Y.ITO,T.HAKOSHIMA,J.G.JEE, JRNL AUTH 2 K.KITANO JRNL TITL SOLUTION STRUCTURE OF THE HRDC DOMAIN OF HUMAN BLOOM JRNL TITL 2 SYNDROME PROTEIN BLM JRNL REF J.BIOCHEM. V. 148 517 2010 JRNL REFN ISSN 0021-924X JRNL PMID 20739603 JRNL DOI 10.1093/JB/MVQ097 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RRD COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB150194. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM [U-98% 13C; U-98% 15N] BLM REMARK 210 -1, 50MM TRIS-2, 100MM SODIUM REMARK 210 CHLORIDE-3, 90% H2O/10% D2O; 1MM REMARK 210 [U-100% 15N] BLM-4, 50MM D11-TRIS REMARK 210 -5, 100MM SODIUM CHLORIDE-6, 90% REMARK 210 H2O/10% D2O; 1MM [U-98% 13C; U- REMARK 210 98% 15N] BLM-7, 50MM D11-TRIS-8, REMARK 210 100MM SODIUM CHLORIDE-9, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH; 4D H(CCO)NH; 3D REMARK 210 HNHB; 3D HN(CO)HB; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.113, NMRPIPE 5.0, CYANA REMARK 210 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 7 -166.25 46.57 REMARK 500 1 VAL A 11 107.38 -175.18 REMARK 500 1 ALA A 12 174.03 59.85 REMARK 500 1 LYS A 13 -66.45 -147.48 REMARK 500 1 VAL A 14 73.06 -113.28 REMARK 500 1 SER A 15 -52.93 -163.10 REMARK 500 1 GLU A 83 -60.95 -96.28 REMARK 500 1 ALA A 98 164.02 59.46 REMARK 500 1 GLU A 99 75.74 -157.58 REMARK 500 2 PRO A 3 -172.59 -67.53 REMARK 500 2 ALA A 9 93.74 -164.26 REMARK 500 2 ALA A 12 -48.86 -151.69 REMARK 500 2 VAL A 14 44.91 -93.48 REMARK 500 2 GLU A 83 -60.29 -96.27 REMARK 500 2 ASP A 100 37.05 -169.34 REMARK 500 3 GLU A 4 31.66 -99.33 REMARK 500 3 LEU A 10 32.86 -146.76 REMARK 500 3 VAL A 11 -61.40 -141.65 REMARK 500 3 SER A 15 92.79 -68.23 REMARK 500 3 GLU A 83 -61.92 -96.36 REMARK 500 3 ASP A 100 -169.72 -79.57 REMARK 500 4 GLU A 4 91.52 60.63 REMARK 500 4 LYS A 8 -50.59 -175.14 REMARK 500 4 ALA A 12 -79.19 64.67 REMARK 500 4 VAL A 14 155.97 60.82 REMARK 500 4 ALA A 98 86.98 59.35 REMARK 500 5 PRO A 3 -168.00 -69.93 REMARK 500 5 PHE A 5 -60.24 -128.33 REMARK 500 5 GLN A 7 114.94 -162.83 REMARK 500 5 VAL A 11 -171.09 45.43 REMARK 500 5 LYS A 13 31.07 -141.66 REMARK 500 5 TYR A 80 30.17 -97.76 REMARK 500 5 GLU A 83 -70.30 -96.28 REMARK 500 5 PRO A 97 -167.39 -69.35 REMARK 500 5 ALA A 98 125.85 63.69 REMARK 500 6 GLN A 7 89.89 -159.60 REMARK 500 6 LYS A 8 -65.52 -139.05 REMARK 500 6 LYS A 13 -50.34 -131.10 REMARK 500 6 GLU A 83 -61.70 -96.20 REMARK 500 7 LYS A 8 -170.99 59.79 REMARK 500 7 ALA A 12 80.04 60.71 REMARK 500 7 SER A 15 76.63 -66.90 REMARK 500 7 GLU A 83 -62.20 -96.20 REMARK 500 8 GLU A 4 -40.75 -175.78 REMARK 500 8 PHE A 5 86.66 -63.13 REMARK 500 8 GLN A 7 95.12 61.67 REMARK 500 8 LYS A 8 -70.67 -60.06 REMARK 500 8 ALA A 9 91.99 60.70 REMARK 500 8 LEU A 10 -76.48 64.37 REMARK 500 8 VAL A 11 -62.96 72.28 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2RRD A 6 101 UNP P54132 BLM_HUMAN 1200 1295 SEQADV 2RRD GLY A 1 UNP P54132 EXPRESSION TAG SEQADV 2RRD ILE A 2 UNP P54132 EXPRESSION TAG SEQADV 2RRD PRO A 3 UNP P54132 EXPRESSION TAG SEQADV 2RRD GLU A 4 UNP P54132 EXPRESSION TAG SEQADV 2RRD PHE A 5 UNP P54132 EXPRESSION TAG SEQRES 1 A 101 GLY ILE PRO GLU PHE LYS GLN LYS ALA LEU VAL ALA LYS SEQRES 2 A 101 VAL SER GLN ARG GLU GLU MET VAL LYS LYS CYS LEU GLY SEQRES 3 A 101 GLU LEU THR GLU VAL CYS LYS SER LEU GLY LYS VAL PHE SEQRES 4 A 101 GLY VAL HIS TYR PHE ASN ILE PHE ASN THR VAL THR LEU SEQRES 5 A 101 LYS LYS LEU ALA GLU SER LEU SER SER ASP PRO GLU VAL SEQRES 6 A 101 LEU LEU GLN ILE ASP GLY VAL THR GLU ASP LYS LEU GLU SEQRES 7 A 101 LYS TYR GLY ALA GLU VAL ILE SER VAL LEU GLN LYS TYR SEQRES 8 A 101 SER GLU TRP THR SER PRO ALA GLU ASP SER HELIX 1 1 SER A 15 PHE A 39 1 25 HELIX 2 2 HIS A 42 PHE A 47 1 6 HELIX 3 3 ASN A 48 LEU A 59 1 12 HELIX 4 4 ASP A 62 GLN A 68 1 7 HELIX 5 5 THR A 73 TYR A 80 1 8 HELIX 6 6 TYR A 80 SER A 96 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1