HEADER HYDROLASE 01-JAN-11 2RRK TITLE SOLUTION STRUCTURE OF THE E. COLI ORF135 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CTP PYROPHOSPHOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ORF135; COMPND 5 EC: 3.6.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX6P3 KEYWDS PYROPHOSPHO HYDROLASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.KAWASAKI,M.MISHIMA REVDAT 2 14-JUN-23 2RRK 1 REMARK SEQADV REVDAT 1 18-JAN-12 2RRK 0 JRNL AUTH K.KAWASAKI,M.MISHIMA JRNL TITL SOLUTION STRUCTURE OF THE E. COLI ORF135 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RRK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000150201. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-99% 15N] ENTITY-1; 50MM REMARK 210 POTASSIUM PHOSPHATE-2; 20MM REMARK 210 POTASSIUM CHLORIDE-3; 1MM DTT-4; REMARK 210 0.1MM EDTA-5; 93% H2O/7% D2O; REMARK 210 1MM [U-99% 13C; U-99% 15N] REMARK 210 ENTITY-6; 50MM POTASSIUM REMARK 210 PHOSPHATE-7; 20MM POTASSIUM REMARK 210 CHLORIDE-8; 1MM DTT-9; 0.1MM REMARK 210 EDTA-10; 93% H2O/7% D2O; 1MM [U- REMARK 210 99% 13C; U-99% 15N] ENTITY-11; REMARK 210 50MM POTASSIUM PHOSPHATE-12; REMARK 210 20MM POTASSIUM CHLORIDE-13; 1MM REMARK 210 DTT-14; 0.1MM EDTA-15; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HN(COCA)CB; 3D HN(CA)CO; 3D HNCO; REMARK 210 3D HCCH-TOCSY; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 4D HC(CO)NH; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-15N NOESY; REMARK 210 2D 15N FILTERED NOESY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, TALOS, SPARKY, REMARK 210 CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 38 HE2 HIS A 103 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 3 -65.78 -102.14 REMARK 500 1 ARG A 27 118.79 -170.89 REMARK 500 1 PRO A 28 -153.72 -97.22 REMARK 500 1 ALA A 29 -83.95 -116.87 REMARK 500 1 VAL A 72 -68.60 -92.10 REMARK 500 1 SER A 80 70.39 41.74 REMARK 500 1 HIS A 101 -74.56 -80.14 REMARK 500 1 ARG A 137 104.16 63.74 REMARK 500 2 ARG A 27 100.46 160.54 REMARK 500 2 PRO A 28 -154.72 -85.12 REMARK 500 2 ALA A 29 -61.64 -145.06 REMARK 500 2 PRO A 46 12.29 -68.26 REMARK 500 2 GLU A 70 142.92 159.52 REMARK 500 2 VAL A 72 -70.37 -96.02 REMARK 500 2 SER A 80 71.69 41.77 REMARK 500 2 ARG A 137 91.37 60.07 REMARK 500 3 ARG A 27 131.51 156.47 REMARK 500 3 PRO A 28 -147.24 -89.26 REMARK 500 3 ALA A 29 -73.92 -98.88 REMARK 500 3 GLN A 33 97.56 -65.43 REMARK 500 3 VAL A 72 -70.80 -94.05 REMARK 500 4 ARG A 27 107.53 81.30 REMARK 500 4 PRO A 28 -75.23 -65.33 REMARK 500 4 ALA A 29 -78.27 -157.90 REMARK 500 4 GLU A 70 103.74 173.04 REMARK 500 4 VAL A 72 -70.17 -95.73 REMARK 500 4 HIS A 101 -77.27 -85.55 REMARK 500 4 GLN A 104 -67.57 -93.41 REMARK 500 4 ARG A 137 100.89 59.83 REMARK 500 4 PRO A 138 107.20 -51.25 REMARK 500 4 ALA A 139 30.80 -173.44 REMARK 500 5 ASP A 19 -22.49 81.46 REMARK 500 5 ARG A 27 103.38 158.53 REMARK 500 5 PRO A 28 -154.90 -81.24 REMARK 500 5 ALA A 29 -42.62 -144.08 REMARK 500 5 ASP A 32 -0.35 69.06 REMARK 500 5 PRO A 46 14.73 -64.03 REMARK 500 5 GLU A 70 109.17 164.18 REMARK 500 5 VAL A 72 -70.04 -94.60 REMARK 500 5 SER A 80 66.84 36.54 REMARK 500 5 HIS A 101 -58.14 -125.07 REMARK 500 5 ARG A 137 105.45 64.76 REMARK 500 6 SER A 5 -58.58 71.29 REMARK 500 6 ARG A 27 140.99 -178.26 REMARK 500 6 ALA A 29 -69.94 66.50 REMARK 500 6 VAL A 72 -70.96 -100.99 REMARK 500 6 HIS A 101 -72.06 -80.48 REMARK 500 6 GLN A 104 -74.25 -88.42 REMARK 500 6 ARG A 137 91.32 41.07 REMARK 500 7 LEU A 3 139.18 -173.16 REMARK 500 REMARK 500 THIS ENTRY HAS 177 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11422 RELATED DB: BMRB DBREF 2RRK A 6 140 UNP P77788 NUDG_ECOLI 1 135 SEQADV 2RRK GLY A 1 UNP P77788 EXPRESSION TAG SEQADV 2RRK PRO A 2 UNP P77788 EXPRESSION TAG SEQADV 2RRK LEU A 3 UNP P77788 EXPRESSION TAG SEQADV 2RRK GLY A 4 UNP P77788 EXPRESSION TAG SEQADV 2RRK SER A 5 UNP P77788 EXPRESSION TAG SEQRES 1 A 140 GLY PRO LEU GLY SER MET LYS MET ILE GLU VAL VAL ALA SEQRES 2 A 140 ALA ILE ILE GLU ARG ASP GLY LYS ILE LEU LEU ALA GLN SEQRES 3 A 140 ARG PRO ALA GLN SER ASP GLN ALA GLY LEU TRP GLU PHE SEQRES 4 A 140 ALA GLY GLY LYS VAL GLU PRO ASP GLU SER GLN ARG GLN SEQRES 5 A 140 ALA LEU VAL ARG GLU LEU ARG GLU GLU LEU GLY ILE GLU SEQRES 6 A 140 ALA THR VAL GLY GLU TYR VAL ALA SER HIS GLN ARG GLU SEQRES 7 A 140 VAL SER GLY ARG ILE ILE HIS LEU HIS ALA TRP HIS VAL SEQRES 8 A 140 PRO ASP PHE HIS GLY THR LEU GLN ALA HIS GLU HIS GLN SEQRES 9 A 140 ALA LEU VAL TRP CYS SER PRO GLU GLU ALA LEU GLN TYR SEQRES 10 A 140 PRO LEU ALA PRO ALA ASP ILE PRO LEU LEU GLU ALA PHE SEQRES 11 A 140 MET ALA LEU ARG ALA ALA ARG PRO ALA ASP HELIX 1 1 SER A 49 LEU A 62 1 14 HELIX 2 2 SER A 110 LEU A 115 1 6 HELIX 3 3 ALA A 122 ARG A 137 1 16 SHEET 1 A 5 TRP A 37 GLU A 38 0 SHEET 2 A 5 LYS A 21 GLN A 26 -1 N ALA A 25 O GLU A 38 SHEET 3 A 5 MET A 8 ARG A 18 -1 N ARG A 18 O LYS A 21 SHEET 4 A 5 ARG A 82 VAL A 91 1 O HIS A 87 N ALA A 13 SHEET 5 A 5 GLU A 70 VAL A 79 -1 N VAL A 79 O ARG A 82 SHEET 1 B 4 GLY A 41 LYS A 43 0 SHEET 2 B 4 MET A 8 ARG A 18 -1 N VAL A 12 O GLY A 42 SHEET 3 B 4 LYS A 21 GLN A 26 -1 O LYS A 21 N ARG A 18 SHEET 4 B 4 LEU A 106 CYS A 109 -1 O CYS A 109 N ILE A 22 SHEET 1 C 2 ILE A 64 THR A 67 0 SHEET 2 C 2 ASP A 93 GLY A 96 -1 O ASP A 93 N THR A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1