HEADER PROTEIN TRANSPORT 30-JAN-11 2RRN TITLE SOLUTION STRUCTURE OF SECDF PERIPLASMIC DOMAIN P4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SECDF PROTEIN-EXPORT MEMBRANE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PERIPLASMIC DOMAIN P4, RESIDUES 470-559; COMPND 5 SYNONYM: SECDF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PYE79 KEYWDS SECDF, PERIPLASMIC DOMAIN, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TANAKA,T.TSUKAZAKI,Y.ECHIZEN,O.NUREKI,T.KOHNO REVDAT 2 28-DEC-11 2RRN 1 JRNL VERSN REVDAT 1 18-MAY-11 2RRN 0 JRNL AUTH T.TSUKAZAKI,H.MORI,Y.ECHIZEN,R.ISHITANI,S.FUKAI,T.TANAKA, JRNL AUTH 2 A.PEREDERINA,D.G.VASSYLYEV,T.KOHNO,A.D.MATURANA,K.ITO, JRNL AUTH 3 O.NUREKI JRNL TITL STRUCTURE AND FUNCTION OF A MEMBRANE COMPONENT SECDF THAT JRNL TITL 2 ENHANCES PROTEIN EXPORT JRNL REF NATURE V. 474 235 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21562494 JRNL DOI 10.1038/NATURE09980 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RRN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB150204. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-13C; U-15N] P4 DOMAIN; REMARK 210 20MM TRIS; 50MM SODIUM CHLORIDE; REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA, TALOS, REMARK 210 PROCHECKNMR REMARK 210 METHOD USED : ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 476 115.71 -161.95 REMARK 500 1 PRO A 506 90.30 -69.76 REMARK 500 1 ALA A 510 170.56 -55.92 REMARK 500 1 GLN A 516 99.22 -68.51 REMARK 500 1 PRO A 518 74.50 -69.74 REMARK 500 1 THR A 519 138.88 -177.68 REMARK 500 1 VAL A 552 108.93 -59.01 REMARK 500 1 SER A 555 145.87 -171.98 REMARK 500 2 PHE A 477 139.56 -172.24 REMARK 500 2 PRO A 506 93.20 -69.78 REMARK 500 2 ALA A 510 170.67 -57.28 REMARK 500 2 PRO A 518 74.52 -69.78 REMARK 500 2 THR A 519 137.48 -176.43 REMARK 500 3 ASP A 476 60.67 -117.73 REMARK 500 3 PRO A 506 88.29 -69.75 REMARK 500 3 PRO A 518 74.48 -69.76 REMARK 500 3 THR A 519 137.02 -176.54 REMARK 500 4 ILE A 475 -178.20 -60.50 REMARK 500 4 PHE A 477 78.67 -105.53 REMARK 500 4 PRO A 506 95.60 -69.79 REMARK 500 4 PRO A 518 74.56 -69.74 REMARK 500 4 THR A 519 139.24 -176.59 REMARK 500 4 VAL A 552 108.34 -58.22 REMARK 500 5 PHE A 477 -71.61 -108.94 REMARK 500 5 PRO A 506 93.18 -69.70 REMARK 500 5 PRO A 518 74.60 -69.81 REMARK 500 5 THR A 519 137.11 -179.91 REMARK 500 5 ALA A 550 -179.66 -66.18 REMARK 500 5 VAL A 552 107.61 -59.12 REMARK 500 6 ASN A 472 134.99 -170.09 REMARK 500 6 ASP A 476 114.33 -160.55 REMARK 500 6 PHE A 477 -55.37 -123.52 REMARK 500 6 PRO A 506 97.25 -69.77 REMARK 500 6 PRO A 518 74.54 -69.71 REMARK 500 6 THR A 519 139.56 -176.38 REMARK 500 6 SER A 555 148.75 -172.23 REMARK 500 7 PRO A 506 91.09 -69.78 REMARK 500 7 PRO A 518 74.41 -69.78 REMARK 500 7 THR A 519 140.21 179.10 REMARK 500 7 ALA A 520 33.24 -95.41 REMARK 500 7 ALA A 550 -179.05 -67.26 REMARK 500 7 VAL A 552 108.53 -55.62 REMARK 500 8 ALA A 510 177.46 -59.21 REMARK 500 8 PRO A 518 74.44 -69.75 REMARK 500 8 THR A 519 136.54 179.27 REMARK 500 8 ALA A 520 32.32 -96.46 REMARK 500 8 VAL A 552 102.03 -59.51 REMARK 500 9 PRO A 506 93.39 -69.82 REMARK 500 9 PRO A 518 72.17 -69.76 REMARK 500 9 THR A 519 141.90 177.23 REMARK 500 REMARK 500 THIS ENTRY HAS 105 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11426 RELATED DB: BMRB REMARK 900 RELATED ID: 3AQO RELATED DB: PDB REMARK 900 RELATED ID: 3AQP RELATED DB: PDB DBREF 2RRN A 470 559 UNP Q5SKE6 Q5SKE6_THET8 470 559 SEQADV 2RRN MET A 468 UNP Q5SKE6 INITIATING METHIONINE SEQADV 2RRN VAL A 469 UNP Q5SKE6 EXPRESSION TAG SEQRES 1 A 92 MET VAL GLY PHE ASN TYR SER ILE ASP PHE THR GLY GLY SEQRES 2 A 92 THR ALA TYR THR LEU ARG ALA GLU PRO ASN VAL GLU VAL SEQRES 3 A 92 GLU THR LEU ARG ARG PHE LEU GLU GLU LYS GLY PHE PRO SEQRES 4 A 92 GLY LYS GLU ALA VAL ILE THR GLN VAL GLN ALA PRO THR SEQRES 5 A 92 ALA ALA TYR ARG GLU PHE LEU VAL LYS LEU PRO PRO LEU SEQRES 6 A 92 SER ASP GLU ARG ARG LEU GLU LEU GLU ARG LEU PHE ALA SEQRES 7 A 92 SER GLU LEU LYS ALA THR VAL LEU ALA SER GLU THR VAL SEQRES 8 A 92 GLY HELIX 1 1 GLU A 492 GLY A 504 1 13 HELIX 2 2 SER A 533 LEU A 548 1 16 SHEET 1 A 4 VAL A 511 VAL A 515 0 SHEET 2 A 4 ARG A 523 LEU A 529 -1 O GLU A 524 N VAL A 515 SHEET 3 A 4 THR A 481 ALA A 487 -1 N ALA A 487 O ARG A 523 SHEET 4 A 4 THR A 551 THR A 557 -1 O THR A 551 N ARG A 486 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1