data_2RRR # _entry.id 2RRR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RRR pdb_00002rrr 10.2210/pdb2rrr/pdb RCSB RCSB150208 ? ? BMRB 11438 ? 10.13018/BMR11438 WWPDB D_1000150208 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RRR _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2011-03-24 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2rrq PDB . unspecified 11438 BMRB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Furuita, K.' 1 'Murata, S.' 2 'Jee, J.G.' 3 'Ichikawa, S.' 4 'Matsuda, A.' 5 'Kojima, C.' 6 # _citation.id primary _citation.title 'Structural Feature of Bent DNA Recognized by HMGB1' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 133 _citation.page_first 5788 _citation.page_last 5790 _citation.year 2011 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21443191 _citation.pdbx_database_id_DOI 10.1021/ja2013399 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Furuita, K.' 1 ? primary 'Murata, S.' 2 ? primary 'Jee, J.G.' 3 ? primary 'Ichikawa, S.' 4 ? primary 'Matsuda, A.' 5 ? primary 'Kojima, C.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*TP*TP*CP*AP*TP*TP*AP*CP*AP*TP*CP*C)-3') ; 4150.717 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*AP*TP*GP*TP*AP*AP*TP*GP*AP*AP*GP*G)-3') ; 4408.890 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DT)(DC)(DA)(DT)(DT)(DA)(DC)(DA)(DT)(DC)(DC)' CCTTCATTACATCC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DT)(DG)(DT)(DA)(DA)(DT)(DG)(DA)(DA)(DG)(DG)' GGATGTAATGAAGG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DT n 1 5 DC n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DA n 1 10 DC n 1 11 DA n 1 12 DT n 1 13 DC n 1 14 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DA n 2 12 DA n 2 13 DG n 2 14 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DC 2 2 2 DC CYT A . n A 1 3 DT 3 3 3 DT THY A . n A 1 4 DT 4 4 4 DT THY A . n A 1 5 DC 5 5 5 DC CYT A . n A 1 6 DA 6 6 6 DA ADE A . n A 1 7 DT 7 7 7 DT THY A . n A 1 8 DT 8 8 8 DT THY A . n A 1 9 DA 9 9 9 DA ADE A . n A 1 10 DC 10 10 10 DC CYT A . n A 1 11 DA 11 11 11 DA ADE A . n A 1 12 DT 12 12 12 DT THY A . n A 1 13 DC 13 13 13 DC CYT A . n A 1 14 DC 14 14 14 DC CYT A . n B 2 1 DG 1 15 15 DG GUA B . n B 2 2 DG 2 16 16 DG GUA B . n B 2 3 DA 3 17 17 DA ADE B . n B 2 4 DT 4 18 18 DT THY B . n B 2 5 DG 5 19 19 DG GUA B . n B 2 6 DT 6 20 20 DT THY B . n B 2 7 DA 7 21 21 DA ADE B . n B 2 8 DA 8 22 22 DA ADE B . n B 2 9 DT 9 23 23 DT THY B . n B 2 10 DG 10 24 24 DG GUA B . n B 2 11 DA 11 25 25 DA ADE B . n B 2 12 DA 12 26 26 DA ADE B . n B 2 13 DG 13 27 27 DG GUA B . n B 2 14 DG 14 28 28 DG GUA B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2RRR _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RRR _struct.title ;DNA oligomer containing ethylene cross-linked cyclic 2'-deoxyuridylate dimer ; _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RRR _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, nucleic acid, deoxyuridylate, bent DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2RRR 2RRR 1 ? ? ? 2 PDB 2RRR 2RRR 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2RRR A 1 ? 14 ? 2RRR 1 ? 14 ? 1 14 2 2 2RRR B 1 ? 14 ? 2RRR 15 ? 28 ? 15 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 14 N1 ? ? A DC 1 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 14 O6 ? ? A DC 1 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 14 N2 ? ? A DC 1 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 13 N1 ? ? A DC 2 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 13 O6 ? ? A DC 2 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 13 N2 ? ? A DC 2 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 3 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 3 B DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 4 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 4 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 5 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 5 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 5 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 6 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 6 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 7 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 7 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 8 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 8 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 9 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 9 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 10 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 10 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 10 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 11 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 11 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 12 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 12 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 13 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 13 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 13 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 14 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 14 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 14 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 14 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 14 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.48 2 1 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 3 1 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.50 4 1 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.51 5 1 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.53 6 1 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.53 7 1 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.58 8 1 O4 A DT 8 ? ? H62 B DA 21 ? ? 1.59 9 2 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.49 10 2 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 11 2 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.51 12 2 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.51 13 2 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.52 14 2 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.54 15 2 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.56 16 3 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.48 17 3 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.49 18 3 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 19 3 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.51 20 3 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.53 21 3 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.53 22 3 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.57 23 4 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 24 4 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.51 25 4 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.51 26 4 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.52 27 4 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.53 28 4 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.54 29 4 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.58 30 5 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.48 31 5 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 32 5 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.53 33 5 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.54 34 5 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.54 35 5 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.54 36 5 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.58 37 6 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 38 6 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.51 39 6 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.52 40 6 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.52 41 6 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.53 42 6 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.53 43 6 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.56 44 7 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.48 45 7 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 46 7 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.51 47 7 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.52 48 7 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.52 49 7 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.53 50 7 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.57 51 8 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 52 8 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.50 53 8 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.51 54 8 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.52 55 8 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.53 56 8 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.55 57 8 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.57 58 8 H62 A DA 6 ? ? O4 B DT 23 ? ? 1.60 59 9 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.48 60 9 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 61 9 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.51 62 9 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.52 63 9 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.53 64 9 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.54 65 9 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.57 66 10 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.48 67 10 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 68 10 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.52 69 10 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.52 70 10 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.53 71 10 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.54 72 10 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.56 73 11 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.48 74 11 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 75 11 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.51 76 11 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.51 77 11 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.53 78 11 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.55 79 11 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.56 80 12 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.48 81 12 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 82 12 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.51 83 12 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.52 84 12 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.53 85 12 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.54 86 12 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.59 87 13 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.48 88 13 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 89 13 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.50 90 13 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.52 91 13 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.52 92 13 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.53 93 13 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.59 94 14 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 95 14 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.52 96 14 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.53 97 14 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.53 98 14 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.55 99 14 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.58 100 14 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.59 101 15 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 102 15 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.50 103 15 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.52 104 15 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.52 105 15 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.52 106 15 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.53 107 15 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.55 108 16 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 109 16 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.50 110 16 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.52 111 16 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.53 112 16 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.55 113 16 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.56 114 17 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.48 115 17 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 116 17 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.53 117 17 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.53 118 17 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.53 119 17 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.54 120 17 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.59 121 18 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.48 122 18 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.49 123 18 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.51 124 18 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.52 125 18 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.52 126 18 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.54 127 18 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.57 128 19 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 129 19 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.50 130 19 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.53 131 19 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.54 132 19 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.54 133 19 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.54 134 19 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.58 135 19 O4 A DT 8 ? ? H62 B DA 21 ? ? 1.60 136 20 C7 A DT 7 ? ? C7 A DT 8 ? ? 1.50 137 20 O2 A DC 5 ? ? H22 B DG 24 ? ? 1.50 138 20 O2 A DC 10 ? ? H22 B DG 19 ? ? 1.50 139 20 O2 A DC 14 ? ? H22 B DG 15 ? ? 1.51 140 20 O2 A DC 2 ? ? H22 B DG 27 ? ? 1.53 141 20 O2 A DC 13 ? ? H22 B DG 16 ? ? 1.54 142 20 O2 A DC 1 ? ? H22 B DG 28 ? ? 1.56 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 300 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RRR _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RRR _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.7mM Ethylene-DNA-1, 0.7mM Ethylene-DNA-2, 50mM sodium phosphate-3, 100mM sodium chloride-4, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.7mM Ethylene-DNA-5, 0.7mM Ethylene-DNA-6, 50mM sodium phosphate-7, 100mM sodium chloride-8, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id Ethylene-DNA-1 0.7 ? mM ? 1 Ethylene-DNA-2 0.7 ? mM ? 1 'sodium phosphate-3' 50 ? mM ? 1 'sodium chloride-4' 100 ? mM ? 1 Ethylene-DNA-5 0.7 ? mM ? 2 Ethylene-DNA-6 0.7 ? mM ? 2 'sodium phosphate-7' 50 ? mM ? 2 'sodium chloride-8' 100 ? mM ? 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 ? 6.8 ? ? 283 K 2 ? 6.8 ? ? 303 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 2 '2D 1H-1H NOESY' 2 3 1 '2D 1H-1H TOCSY' 2 4 1 '2D DQF-COSY' 2 5 2 '2D 1H-13C HSQC' # _pdbx_nmr_refine.entry_id 2RRR _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 1 ? Goddard 'chemical shift assignment' Sparky 2 ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 3 1.2 'Brandan, A. Borgias, Paul D. Thomas, He Liu and Anil Kumar' 'structure solution' MARDIGRAS 4 ? ? refinement CNS 5 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2RRR 'double helix' 2RRR 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 14 1_555 0.463 -0.315 0.102 -2.330 -0.724 1.097 1 A_DC1:DG28_B A 1 ? B 28 ? 19 1 1 A DC 2 1_555 B DG 13 1_555 0.477 -0.329 0.065 -0.979 0.616 1.931 2 A_DC2:DG27_B A 2 ? B 27 ? 19 1 1 A DT 3 1_555 B DA 12 1_555 -0.071 -0.267 0.062 -5.137 -1.813 -1.806 3 A_DT3:DA26_B A 3 ? B 26 ? 20 1 1 A DT 4 1_555 B DA 11 1_555 -0.040 -0.301 0.041 -0.692 -2.289 -1.375 4 A_DT4:DA25_B A 4 ? B 25 ? 20 1 1 A DC 5 1_555 B DG 10 1_555 0.367 -0.322 0.064 -1.085 -1.680 1.974 5 A_DC5:DG24_B A 5 ? B 24 ? 19 1 1 A DA 6 1_555 B DT 9 1_555 0.068 -0.286 -0.013 4.705 -1.462 -4.127 6 A_DA6:DT23_B A 6 ? B 23 ? 20 1 1 A DT 7 1_555 B DA 8 1_555 0.214 -0.210 -0.564 3.962 -14.291 7.550 7 A_DT7:DA22_B A 7 ? B 22 ? 20 1 1 A DT 8 1_555 B DA 7 1_555 -0.386 -0.039 0.102 -7.266 4.480 -12.364 8 A_DT8:DA21_B A 8 ? B 21 ? 20 1 1 A DA 9 1_555 B DT 6 1_555 0.096 -0.290 0.088 2.768 -3.725 -2.170 9 A_DA9:DT20_B A 9 ? B 20 ? 20 1 1 A DC 10 1_555 B DG 5 1_555 0.478 -0.350 0.063 -0.577 -0.136 2.261 10 A_DC10:DG19_B A 10 ? B 19 ? 19 1 1 A DA 11 1_555 B DT 4 1_555 0.056 -0.285 -0.084 0.612 -2.617 -2.294 11 A_DA11:DT18_B A 11 ? B 18 ? 20 1 1 A DT 12 1_555 B DA 3 1_555 -0.079 -0.284 0.054 -0.131 0.729 -1.125 12 A_DT12:DA17_B A 12 ? B 17 ? 20 1 1 A DC 13 1_555 B DG 2 1_555 0.469 -0.310 0.021 2.400 -1.426 3.338 13 A_DC13:DG16_B A 13 ? B 16 ? 19 1 1 A DC 14 1_555 B DG 1 1_555 0.314 -0.321 -0.027 -0.104 1.004 1.315 14 A_DC14:DG15_B A 14 ? B 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 14 1_555 A DC 2 1_555 B DG 13 1_555 0.152 -0.415 3.117 0.422 3.961 37.444 -1.131 -0.184 3.061 6.148 -0.655 37.647 1 AA_DC1DC2:DG27DG28_BB A 1 ? B 28 ? A 2 ? B 27 ? 1 A DC 2 1_555 B DG 13 1_555 A DT 3 1_555 B DA 12 1_555 -0.028 -1.044 3.207 2.172 8.243 30.445 -3.355 0.431 2.825 15.324 -4.037 31.588 2 AA_DC2DT3:DA26DG27_BB A 2 ? B 27 ? A 3 ? B 26 ? 1 A DT 3 1_555 B DA 12 1_555 A DT 4 1_555 B DA 11 1_555 0.248 -0.716 3.123 0.053 4.871 34.053 -1.926 -0.412 2.995 8.264 -0.090 34.389 3 AA_DT3DT4:DA25DA26_BB A 3 ? B 26 ? A 4 ? B 25 ? 1 A DT 4 1_555 B DA 11 1_555 A DC 5 1_555 B DG 10 1_555 0.349 -0.642 3.154 2.208 10.303 37.386 -2.154 -0.271 2.899 15.695 -3.364 38.792 4 AA_DT4DC5:DG24DA25_BB A 4 ? B 25 ? A 5 ? B 24 ? 1 A DC 5 1_555 B DG 10 1_555 A DA 6 1_555 B DT 9 1_555 -0.408 -0.659 2.888 2.690 12.120 33.573 -2.557 0.994 2.472 20.146 -4.472 35.733 5 AA_DC5DA6:DT23DG24_BB A 5 ? B 24 ? A 6 ? B 23 ? 1 A DA 6 1_555 B DT 9 1_555 A DT 7 1_555 B DA 8 1_555 0.426 -0.702 3.102 3.153 7.232 30.841 -2.512 -0.240 2.896 13.327 -5.811 31.811 6 AA_DA6DT7:DA22DT23_BB A 6 ? B 23 ? A 7 ? B 22 ? 1 A DT 7 1_555 B DA 8 1_555 A DT 8 1_555 B DA 7 1_555 0.386 0.007 4.126 -4.838 30.164 16.921 -5.870 -1.588 1.982 60.909 9.768 34.825 7 AA_DT7DT8:DA21DA22_BB A 7 ? B 22 ? A 8 ? B 21 ? 1 A DT 8 1_555 B DA 7 1_555 A DA 9 1_555 B DT 6 1_555 0.650 -0.566 2.852 0.171 13.339 36.584 -2.225 -0.960 2.506 20.434 -0.262 38.862 8 AA_DT8DA9:DT20DA21_BB A 8 ? B 21 ? A 9 ? B 20 ? 1 A DA 9 1_555 B DT 6 1_555 A DC 10 1_555 B DG 5 1_555 0.144 -0.851 3.307 -1.363 10.150 33.739 -2.879 -0.436 2.928 17.008 2.284 35.216 9 AA_DA9DC10:DG19DT20_BB A 9 ? B 20 ? A 10 ? B 19 ? 1 A DC 10 1_555 B DG 5 1_555 A DA 11 1_555 B DT 4 1_555 -0.340 -0.869 2.900 2.460 15.937 32.266 -3.285 0.840 2.212 26.697 -4.120 35.976 10 AA_DC10DA11:DT18DG19_BB A 10 ? B 19 ? A 11 ? B 18 ? 1 A DA 11 1_555 B DT 4 1_555 A DT 12 1_555 B DA 3 1_555 0.161 -0.879 3.354 -1.343 8.245 30.788 -3.089 -0.535 3.014 15.182 2.473 31.875 11 AA_DA11DT12:DA17DT18_BB A 11 ? B 18 ? A 12 ? B 17 ? 1 A DT 12 1_555 B DA 3 1_555 A DC 13 1_555 B DG 2 1_555 0.304 -0.706 3.160 -0.623 1.302 37.987 -1.243 -0.543 3.130 2.000 0.956 38.014 12 AA_DT12DC13:DG16DA17_BB A 12 ? B 17 ? A 13 ? B 16 ? 1 A DC 13 1_555 B DG 2 1_555 A DC 14 1_555 B DG 1 1_555 -0.364 -0.931 3.499 -1.766 -11.147 39.622 0.019 0.305 3.632 -16.053 2.543 41.136 13 AA_DC13DC14:DG15DG16_BB A 13 ? B 16 ? A 14 ? B 15 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker AVANCE 1 'Bruker Avance' 800 Bruker DRX 2 'Bruker DRX' # _atom_sites.entry_id 2RRR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ #