data_2RS7 # _entry.id 2RS7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RS7 pdb_00002rs7 10.2210/pdb2rs7/pdb RCSB RCSB150221 ? ? BMRB 11457 ? ? WWPDB D_1000150221 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2RS6 PDB . unspecified 1UIL PDB . unspecified 11457 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RS7 _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2011-11-29 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagata, T.' 1 'Muto, Y.' 2 'Tsuda, K.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Terada, T.' 6 'Shirouzu, M.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structures of the double-stranded RNA-binding domains from RNA helicase A' _citation.journal_abbrev Proteins _citation.journal_volume 80 _citation.page_first 1699 _citation.page_last 1706 _citation.year 2012 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22454253 _citation.pdbx_database_id_DOI 10.1002/prot.24059 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagata, T.' 1 ? primary 'Tsuda, K.' 2 ? primary 'Kobayashi, N.' 3 ? primary 'Shirouzu, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Guntert, P.' 6 ? primary 'Yokoyama, S.' 7 ? primary 'Muto, Y.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'ATP-dependent RNA helicase A' _entity.formula_weight 12506.934 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.6.4.13 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DEAH box protein 9, mHEL-5, Nuclear DNA helicase II, NDH II' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGS NKKLAAQSCALSLVRQLYHLGVIEAYSSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGS NKKLAAQSCALSLVRQLYHLGVIEAYSSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LEU n 1 9 GLU n 1 10 SER n 1 11 GLU n 1 12 GLU n 1 13 VAL n 1 14 ASP n 1 15 LEU n 1 16 ASN n 1 17 ALA n 1 18 GLY n 1 19 LEU n 1 20 HIS n 1 21 GLY n 1 22 ASN n 1 23 TRP n 1 24 THR n 1 25 LEU n 1 26 GLU n 1 27 ASN n 1 28 ALA n 1 29 LYS n 1 30 ALA n 1 31 ARG n 1 32 LEU n 1 33 ASN n 1 34 GLN n 1 35 TYR n 1 36 PHE n 1 37 GLN n 1 38 LYS n 1 39 GLU n 1 40 LYS n 1 41 ILE n 1 42 GLN n 1 43 GLY n 1 44 GLU n 1 45 TYR n 1 46 LYS n 1 47 TYR n 1 48 THR n 1 49 GLN n 1 50 VAL n 1 51 GLY n 1 52 PRO n 1 53 ASP n 1 54 HIS n 1 55 ASN n 1 56 ARG n 1 57 SER n 1 58 PHE n 1 59 ILE n 1 60 ALA n 1 61 GLU n 1 62 MET n 1 63 THR n 1 64 ILE n 1 65 TYR n 1 66 ILE n 1 67 LYS n 1 68 GLN n 1 69 LEU n 1 70 GLY n 1 71 ARG n 1 72 ARG n 1 73 ILE n 1 74 PHE n 1 75 ALA n 1 76 ARG n 1 77 GLU n 1 78 HIS n 1 79 GLY n 1 80 SER n 1 81 ASN n 1 82 LYS n 1 83 LYS n 1 84 LEU n 1 85 ALA n 1 86 ALA n 1 87 GLN n 1 88 SER n 1 89 CYS n 1 90 ALA n 1 91 LEU n 1 92 SER n 1 93 LEU n 1 94 VAL n 1 95 ARG n 1 96 GLN n 1 97 LEU n 1 98 TYR n 1 99 HIS n 1 100 LEU n 1 101 GLY n 1 102 VAL n 1 103 ILE n 1 104 GLU n 1 105 ALA n 1 106 TYR n 1 107 SER n 1 108 SER n 1 109 GLY n 1 110 PRO n 1 111 SER n 1 112 SER n 1 113 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Dhx9, Ddx9' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'cell-free protein synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DHX9_MOUSE _struct_ref.pdbx_db_accession O70133 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQ SCALSLVRQLYHLGVIEAYS ; _struct_ref.pdbx_align_begin 163 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RS7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 107 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O70133 _struct_ref_seq.db_align_beg 163 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 262 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 163 _struct_ref_seq.pdbx_auth_seq_align_end 262 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2RS7 GLY A 1 ? UNP O70133 ? ? 'expression tag' 156 1 1 2RS7 SER A 2 ? UNP O70133 ? ? 'expression tag' 157 2 1 2RS7 SER A 3 ? UNP O70133 ? ? 'expression tag' 158 3 1 2RS7 GLY A 4 ? UNP O70133 ? ? 'expression tag' 159 4 1 2RS7 SER A 5 ? UNP O70133 ? ? 'expression tag' 160 5 1 2RS7 SER A 6 ? UNP O70133 ? ? 'expression tag' 161 6 1 2RS7 GLY A 7 ? UNP O70133 ? ? 'expression tag' 162 7 1 2RS7 SER A 108 ? UNP O70133 ? ? 'expression tag' 263 8 1 2RS7 GLY A 109 ? UNP O70133 ? ? 'expression tag' 264 9 1 2RS7 PRO A 110 ? UNP O70133 ? ? 'expression tag' 265 10 1 2RS7 SER A 111 ? UNP O70133 ? ? 'expression tag' 266 11 1 2RS7 SER A 112 ? UNP O70133 ? ? 'expression tag' 267 12 1 2RS7 GLY A 113 ? UNP O70133 ? ? 'expression tag' 268 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-13C NOESY' 1 2 1 '3D 1H-15N NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;1.16 mM [U-100% 13C; U-100% 15N] entity-1, 20 mM sodium phosphate-2, 100 mM sodium chloride-3, 1 mM DTT-4, 0.02 % sodium azide-5, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 700 Bruker AVANCE 2 'Bruker Avance' 600 Bruker AVANCE 3 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2RS7 _pdbx_nmr_refine.method 'simulated annealing, torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RS7 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RS7 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm' refinement Amber 1 ? ? refinement CYANA 2 ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2RS7 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RS7 _struct.title 'Solution structure of the second dsRBD from RNA helicase A' _struct.pdbx_model_details 'fewest violations, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RS7 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;double-stranded RNA binding domain, dsRBD, dsrm, HYDROLASE, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 16 ? GLY A 21 ? ASN A 171 GLY A 176 1 ? 6 HELX_P HELX_P2 2 THR A 24 ? LYS A 40 ? THR A 179 LYS A 195 1 ? 17 HELX_P HELX_P3 3 ASN A 81 ? LEU A 100 ? ASN A 236 LEU A 255 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 46 ? VAL A 50 ? LYS A 201 VAL A 205 A 2 SER A 57 ? TYR A 65 ? SER A 212 TYR A 220 A 3 ARG A 72 ? GLY A 79 ? ARG A 227 GLY A 234 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 48 ? N THR A 203 O ILE A 59 ? O ILE A 214 A 2 3 N ALA A 60 ? N ALA A 215 O GLU A 77 ? O GLU A 232 # _atom_sites.entry_id 2RS7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 156 156 GLY GLY A . n A 1 2 SER 2 157 157 SER SER A . n A 1 3 SER 3 158 158 SER SER A . n A 1 4 GLY 4 159 159 GLY GLY A . n A 1 5 SER 5 160 160 SER SER A . n A 1 6 SER 6 161 161 SER SER A . n A 1 7 GLY 7 162 162 GLY GLY A . n A 1 8 LEU 8 163 163 LEU LEU A . n A 1 9 GLU 9 164 164 GLU GLU A . n A 1 10 SER 10 165 165 SER SER A . n A 1 11 GLU 11 166 166 GLU GLU A . n A 1 12 GLU 12 167 167 GLU GLU A . n A 1 13 VAL 13 168 168 VAL VAL A . n A 1 14 ASP 14 169 169 ASP ASP A . n A 1 15 LEU 15 170 170 LEU LEU A . n A 1 16 ASN 16 171 171 ASN ASN A . n A 1 17 ALA 17 172 172 ALA ALA A . n A 1 18 GLY 18 173 173 GLY GLY A . n A 1 19 LEU 19 174 174 LEU LEU A . n A 1 20 HIS 20 175 175 HIS HIS A . n A 1 21 GLY 21 176 176 GLY GLY A . n A 1 22 ASN 22 177 177 ASN ASN A . n A 1 23 TRP 23 178 178 TRP TRP A . n A 1 24 THR 24 179 179 THR THR A . n A 1 25 LEU 25 180 180 LEU LEU A . n A 1 26 GLU 26 181 181 GLU GLU A . n A 1 27 ASN 27 182 182 ASN ASN A . n A 1 28 ALA 28 183 183 ALA ALA A . n A 1 29 LYS 29 184 184 LYS LYS A . n A 1 30 ALA 30 185 185 ALA ALA A . n A 1 31 ARG 31 186 186 ARG ARG A . n A 1 32 LEU 32 187 187 LEU LEU A . n A 1 33 ASN 33 188 188 ASN ASN A . n A 1 34 GLN 34 189 189 GLN GLN A . n A 1 35 TYR 35 190 190 TYR TYR A . n A 1 36 PHE 36 191 191 PHE PHE A . n A 1 37 GLN 37 192 192 GLN GLN A . n A 1 38 LYS 38 193 193 LYS LYS A . n A 1 39 GLU 39 194 194 GLU GLU A . n A 1 40 LYS 40 195 195 LYS LYS A . n A 1 41 ILE 41 196 196 ILE ILE A . n A 1 42 GLN 42 197 197 GLN GLN A . n A 1 43 GLY 43 198 198 GLY GLY A . n A 1 44 GLU 44 199 199 GLU GLU A . n A 1 45 TYR 45 200 200 TYR TYR A . n A 1 46 LYS 46 201 201 LYS LYS A . n A 1 47 TYR 47 202 202 TYR TYR A . n A 1 48 THR 48 203 203 THR THR A . n A 1 49 GLN 49 204 204 GLN GLN A . n A 1 50 VAL 50 205 205 VAL VAL A . n A 1 51 GLY 51 206 206 GLY GLY A . n A 1 52 PRO 52 207 207 PRO PRO A . n A 1 53 ASP 53 208 208 ASP ASP A . n A 1 54 HIS 54 209 209 HIS HIS A . n A 1 55 ASN 55 210 210 ASN ASN A . n A 1 56 ARG 56 211 211 ARG ARG A . n A 1 57 SER 57 212 212 SER SER A . n A 1 58 PHE 58 213 213 PHE PHE A . n A 1 59 ILE 59 214 214 ILE ILE A . n A 1 60 ALA 60 215 215 ALA ALA A . n A 1 61 GLU 61 216 216 GLU GLU A . n A 1 62 MET 62 217 217 MET MET A . n A 1 63 THR 63 218 218 THR THR A . n A 1 64 ILE 64 219 219 ILE ILE A . n A 1 65 TYR 65 220 220 TYR TYR A . n A 1 66 ILE 66 221 221 ILE ILE A . n A 1 67 LYS 67 222 222 LYS LYS A . n A 1 68 GLN 68 223 223 GLN GLN A . n A 1 69 LEU 69 224 224 LEU LEU A . n A 1 70 GLY 70 225 225 GLY GLY A . n A 1 71 ARG 71 226 226 ARG ARG A . n A 1 72 ARG 72 227 227 ARG ARG A . n A 1 73 ILE 73 228 228 ILE ILE A . n A 1 74 PHE 74 229 229 PHE PHE A . n A 1 75 ALA 75 230 230 ALA ALA A . n A 1 76 ARG 76 231 231 ARG ARG A . n A 1 77 GLU 77 232 232 GLU GLU A . n A 1 78 HIS 78 233 233 HIS HIS A . n A 1 79 GLY 79 234 234 GLY GLY A . n A 1 80 SER 80 235 235 SER SER A . n A 1 81 ASN 81 236 236 ASN ASN A . n A 1 82 LYS 82 237 237 LYS LYS A . n A 1 83 LYS 83 238 238 LYS LYS A . n A 1 84 LEU 84 239 239 LEU LEU A . n A 1 85 ALA 85 240 240 ALA ALA A . n A 1 86 ALA 86 241 241 ALA ALA A . n A 1 87 GLN 87 242 242 GLN GLN A . n A 1 88 SER 88 243 243 SER SER A . n A 1 89 CYS 89 244 244 CYS CYS A . n A 1 90 ALA 90 245 245 ALA ALA A . n A 1 91 LEU 91 246 246 LEU LEU A . n A 1 92 SER 92 247 247 SER SER A . n A 1 93 LEU 93 248 248 LEU LEU A . n A 1 94 VAL 94 249 249 VAL VAL A . n A 1 95 ARG 95 250 250 ARG ARG A . n A 1 96 GLN 96 251 251 GLN GLN A . n A 1 97 LEU 97 252 252 LEU LEU A . n A 1 98 TYR 98 253 253 TYR TYR A . n A 1 99 HIS 99 254 254 HIS HIS A . n A 1 100 LEU 100 255 255 LEU LEU A . n A 1 101 GLY 101 256 256 GLY GLY A . n A 1 102 VAL 102 257 257 VAL VAL A . n A 1 103 ILE 103 258 258 ILE ILE A . n A 1 104 GLU 104 259 259 GLU GLU A . n A 1 105 ALA 105 260 260 ALA ALA A . n A 1 106 TYR 106 261 261 TYR TYR A . n A 1 107 SER 107 262 262 SER SER A . n A 1 108 SER 108 263 263 SER SER A . n A 1 109 GLY 109 264 264 GLY GLY A . n A 1 110 PRO 110 265 265 PRO PRO A . n A 1 111 SER 111 266 266 SER SER A . n A 1 112 SER 112 267 267 SER SER A . n A 1 113 GLY 113 268 268 GLY GLY A . n # _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center RSGI _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-14 2 'Structure model' 1 1 2013-10-16 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id entity-1 1.16 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium phosphate-2' 20 ? mM ? 1 'sodium chloride-3' 100 ? mM ? 1 DTT-4 1 ? mM ? 1 'sodium azide-5' 0.02 ? % ? 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 2 NE A ARG 231 ? ? CZ A ARG 231 ? ? NH1 A ARG 231 ? ? 123.41 120.30 3.11 0.50 N 2 2 NE A ARG 231 ? ? CZ A ARG 231 ? ? NH2 A ARG 231 ? ? 116.85 120.30 -3.45 0.50 N 3 10 NE A ARG 186 ? ? CZ A ARG 186 ? ? NH1 A ARG 186 ? ? 124.06 120.30 3.76 0.50 N 4 10 NE A ARG 231 ? ? CZ A ARG 231 ? ? NH1 A ARG 231 ? ? 123.48 120.30 3.18 0.50 N 5 10 NE A ARG 231 ? ? CZ A ARG 231 ? ? NH2 A ARG 231 ? ? 116.62 120.30 -3.68 0.50 N 6 11 NE A ARG 231 ? ? CZ A ARG 231 ? ? NH1 A ARG 231 ? ? 123.47 120.30 3.17 0.50 N 7 11 NE A ARG 231 ? ? CZ A ARG 231 ? ? NH2 A ARG 231 ? ? 116.67 120.30 -3.63 0.50 N 8 15 NE A ARG 231 ? ? CZ A ARG 231 ? ? NH1 A ARG 231 ? ? 123.41 120.30 3.11 0.50 N 9 19 NE A ARG 231 ? ? CZ A ARG 231 ? ? NH1 A ARG 231 ? ? 123.59 120.30 3.29 0.50 N 10 20 NE A ARG 231 ? ? CZ A ARG 231 ? ? NH1 A ARG 231 ? ? 123.58 120.30 3.28 0.50 N 11 20 NE A ARG 231 ? ? CZ A ARG 231 ? ? NH2 A ARG 231 ? ? 116.57 120.30 -3.73 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 210 ? ? -157.36 80.05 2 2 GLU A 164 ? ? 63.10 63.88 3 2 ASN A 210 ? ? -157.43 88.66 4 3 ASN A 210 ? ? -157.53 87.56 5 4 SER A 157 ? ? 72.02 -0.85 6 4 GLU A 164 ? ? -161.07 119.74 7 4 ASN A 210 ? ? -156.20 88.74 8 5 SER A 266 ? ? -150.31 7.43 9 6 ASN A 210 ? ? -156.74 88.58 10 7 ASN A 210 ? ? -156.23 88.59 11 7 SER A 263 ? ? -161.67 -158.95 12 7 SER A 267 ? ? -164.80 103.23 13 8 ASN A 210 ? ? -157.25 88.83 14 10 SER A 158 ? ? 70.91 -24.54 15 10 ASN A 210 ? ? -157.39 89.32 16 11 SER A 161 ? ? -142.21 11.41 17 11 ASN A 210 ? ? -157.15 88.80 18 13 ASN A 210 ? ? -156.52 88.46 19 13 SER A 267 ? ? -151.36 3.89 20 14 SER A 160 ? ? 74.48 -37.17 21 14 PRO A 265 ? ? -80.23 44.92 22 15 GLU A 164 ? ? -149.46 25.85 23 15 SER A 165 ? ? -74.22 23.72 24 15 SER A 267 ? ? -148.66 12.14 25 16 SER A 165 ? ? -154.85 5.57 26 16 ASN A 210 ? ? -157.39 88.30 27 17 SER A 158 ? ? -163.01 -40.67 28 17 SER A 165 ? ? -141.27 11.94 29 17 ASN A 210 ? ? -156.32 88.70 30 18 SER A 160 ? ? 72.37 -4.53 31 19 LEU A 163 ? ? -164.54 -164.90 32 19 GLU A 164 ? ? 82.95 102.92 33 19 ASN A 210 ? ? -157.46 88.57 34 20 ASN A 210 ? ? -157.38 88.84 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 TYR A 190 ? ? 0.074 'SIDE CHAIN' 2 3 TYR A 190 ? ? 0.093 'SIDE CHAIN' 3 5 ARG A 211 ? ? 0.087 'SIDE CHAIN' 4 8 TYR A 190 ? ? 0.081 'SIDE CHAIN' 5 9 ARG A 211 ? ? 0.084 'SIDE CHAIN' 6 12 ARG A 211 ? ? 0.089 'SIDE CHAIN' 7 14 ARG A 211 ? ? 0.088 'SIDE CHAIN' 8 15 TYR A 190 ? ? 0.071 'SIDE CHAIN' 9 16 TYR A 261 ? ? 0.070 'SIDE CHAIN' 10 18 ARG A 211 ? ? 0.087 'SIDE CHAIN' 11 19 TYR A 190 ? ? 0.071 'SIDE CHAIN' #