HEADER TRANSCRIPTION 29-NOV-11 2RS8 TITLE SOLUTION STRUCTURE OF THE N-TERMINAL RNA RECOGNITION MOTIF OF NONO COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-POU DOMAIN-CONTAINING OCTAMER-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 68-153; COMPND 5 SYNONYM: NONO PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NONO; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM, RBD, RNP, TRANSCRIPTION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 14-JUN-23 2RS8 1 REMARK SEQADV REVDAT 1 19-DEC-12 2RS8 0 JRNL AUTH T.NAGATA JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL RNA RECOGNITION MOTIF JRNL TITL 2 OF NONO JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER, CYANA REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000150222. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY-1, 20 MM [U-100% 2H] TRIS- REMARK 210 2, 1 MM DTT-3, 100 MM SODIUM REMARK 210 CHLORIDE-4, 0.02 % SODIUM AZIDE- REMARK 210 5, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 77 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG A 77 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 2 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 3 ARG A 77 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 17 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 18 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 76 34.60 -78.54 REMARK 500 1 HIS A 148 -48.40 -155.97 REMARK 500 2 SER A 76 25.84 -79.46 REMARK 500 2 LEU A 152 66.40 -105.41 REMARK 500 3 SER A 76 36.20 -72.25 REMARK 500 3 ASN A 133 18.99 55.15 REMARK 500 3 SER A 149 -47.09 -156.38 REMARK 500 4 SER A 65 -159.70 -166.67 REMARK 500 4 GLU A 69 11.81 55.95 REMARK 500 4 CYS A 147 34.77 -86.17 REMARK 500 4 LEU A 152 32.74 -155.93 REMARK 500 5 SER A 149 82.82 -151.50 REMARK 500 5 SER A 151 30.66 -76.60 REMARK 500 6 PHE A 72 39.00 -82.37 REMARK 500 6 SER A 151 11.87 54.86 REMARK 500 6 PRO A 156 36.35 -80.00 REMARK 500 7 GLN A 74 73.46 -101.35 REMARK 500 8 SER A 76 39.82 -86.17 REMARK 500 9 SER A 76 33.63 -81.84 REMARK 500 10 THR A 153 -4.88 71.13 REMARK 500 11 SER A 63 46.34 -81.51 REMARK 500 12 SER A 76 40.18 -75.13 REMARK 500 12 ALA A 146 42.97 -79.51 REMARK 500 12 SER A 149 60.78 -114.28 REMARK 500 13 SER A 76 41.38 -86.47 REMARK 500 14 GLN A 74 45.06 -91.08 REMARK 500 14 ARG A 75 37.82 -75.30 REMARK 500 14 SER A 76 36.33 -78.79 REMARK 500 14 ARG A 137 18.88 59.03 REMARK 500 15 SER A 63 -5.64 69.01 REMARK 500 15 LYS A 70 33.85 -93.06 REMARK 500 15 SER A 76 29.13 49.61 REMARK 500 16 ASP A 86 19.00 -140.43 REMARK 500 17 ALA A 150 113.65 -161.34 REMARK 500 18 SER A 63 -165.18 -169.15 REMARK 500 19 ASN A 133 17.81 58.49 REMARK 500 19 ALA A 150 45.54 -80.85 REMARK 500 20 ALA A 146 53.63 -97.97 REMARK 500 20 SER A 158 -0.71 67.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 99 0.08 SIDE CHAIN REMARK 500 4 TYR A 99 0.07 SIDE CHAIN REMARK 500 19 TYR A 99 0.07 SIDE CHAIN REMARK 500 20 TYR A 99 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CPJ RELATED DB: PDB REMARK 900 RELATED ID: 11458 RELATED DB: BMRB DBREF 2RS8 A 68 153 UNP Q99K48 NONO_MOUSE 68 153 SEQADV 2RS8 GLY A 61 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 SER A 62 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 SER A 63 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 GLY A 64 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 SER A 65 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 SER A 66 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 GLY A 67 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 SER A 154 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 GLY A 155 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 PRO A 156 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 SER A 157 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 SER A 158 UNP Q99K48 EXPRESSION TAG SEQADV 2RS8 GLY A 159 UNP Q99K48 EXPRESSION TAG SEQRES 1 A 99 GLY SER SER GLY SER SER GLY GLY GLU LYS THR PHE THR SEQRES 2 A 99 GLN ARG SER ARG LEU PHE VAL GLY ASN LEU PRO PRO ASP SEQRES 3 A 99 ILE THR GLU GLU GLU MET ARG LYS LEU PHE GLU LYS TYR SEQRES 4 A 99 GLY LYS ALA GLY GLU VAL PHE ILE HIS LYS ASP LYS GLY SEQRES 5 A 99 PHE GLY PHE ILE ARG LEU GLU THR ARG THR LEU ALA GLU SEQRES 6 A 99 ILE ALA LYS VAL GLU LEU ASP ASN MET PRO LEU ARG GLY SEQRES 7 A 99 LYS GLN LEU ARG VAL ARG PHE ALA CYS HIS SER ALA SER SEQRES 8 A 99 LEU THR SER GLY PRO SER SER GLY HELIX 1 1 THR A 88 PHE A 96 1 9 HELIX 2 2 GLU A 97 GLY A 100 5 4 HELIX 3 3 THR A 120 ASP A 132 1 13 SHEET 1 A 4 GLU A 104 HIS A 108 0 SHEET 2 A 4 PHE A 113 ARG A 117 -1 O PHE A 113 N HIS A 108 SHEET 3 A 4 ARG A 77 GLY A 81 -1 N LEU A 78 O ILE A 116 SHEET 4 A 4 ARG A 142 PHE A 145 -1 O ARG A 144 N PHE A 79 SHEET 1 B 2 PRO A 135 LEU A 136 0 SHEET 2 B 2 LYS A 139 GLN A 140 -1 O LYS A 139 N LEU A 136 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1