HEADER METAL BINDING PROTEIN 07-MAR-12 2RSJ TITLE SOLUTION STRUCTURES OF THE DNA-BINDING DOMAINS OF IMMUNE-RELATED ZINC- TITLE 2 FINGER PROTEIN ZFAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN ZFAT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2H2-TYPE 3-5, UNP RESIDUES 269-353; COMPND 5 SYNONYM: ZINC FINGER GENE IN AITD SUSCEPTIBILITY REGION, ZINC FINGER COMPND 6 PROTEIN 406; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZFAT, KIAA1485, ZFAT1, ZNF406; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P061010-07 KEYWDS ZFAT, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,T.UMEHARA,T.KIGAWA,S.YOKOYAMA REVDAT 2 14-JUN-23 2RSJ 1 REMARK SEQADV LINK REVDAT 1 13-MAR-13 2RSJ 0 JRNL AUTH N.TOCHIO,T.UMEHARA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE DNA-BINDING DOMAINS OF JRNL TITL 2 IMMUNE-RELATED ZINC-FINGER PROTEIN ZFAT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000150232. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.59 MM [U-13C; U-15N] PROTEIN REMARK 210 -1, 20 MM [U-2H] TRIS-2, 100 MM REMARK 210 SODIUM CHLORIDE-3, 1 MM [U-2H] REMARK 210 DTT-4, 0.02 % SODIUM AZIDE-5, 50 REMARK 210 UM ZINC CHLORIDE-6, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, KUJIRA, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 109.08 -164.18 REMARK 500 1 GLU A 13 32.95 -85.59 REMARK 500 1 TYR A 14 -51.08 -126.99 REMARK 500 1 HIS A 32 57.90 -92.07 REMARK 500 1 SER A 71 39.18 -95.53 REMARK 500 2 ASN A 16 50.70 39.67 REMARK 500 2 HIS A 32 35.96 -91.98 REMARK 500 2 ASN A 34 163.47 -41.58 REMARK 500 2 HIS A 60 89.48 -60.62 REMARK 500 2 LEU A 75 43.25 -80.23 REMARK 500 3 SER A 2 42.34 -92.40 REMARK 500 3 SER A 5 123.79 -174.21 REMARK 500 3 LEU A 29 -26.62 -38.12 REMARK 500 3 SER A 44 40.98 -81.85 REMARK 500 3 HIS A 60 -72.74 -61.49 REMARK 500 3 SER A 71 40.05 -100.89 REMARK 500 3 LEU A 75 42.10 -104.49 REMARK 500 3 SER A 76 118.03 -172.44 REMARK 500 4 ASN A 16 46.57 39.07 REMARK 500 4 PRO A 41 2.64 -69.73 REMARK 500 4 VAL A 87 -66.85 -102.91 REMARK 500 4 LYS A 89 41.02 -100.84 REMARK 500 4 LYS A 90 134.01 -175.58 REMARK 500 5 SER A 6 149.56 -37.02 REMARK 500 5 GLU A 35 68.98 -106.26 REMARK 500 5 GLN A 42 -62.85 -108.23 REMARK 500 5 HIS A 60 85.95 -56.00 REMARK 500 5 THR A 61 118.01 -171.87 REMARK 500 5 SER A 71 40.44 -95.60 REMARK 500 5 ILE A 91 124.27 -35.77 REMARK 500 6 SER A 6 121.09 -173.42 REMARK 500 6 GLU A 13 34.21 -92.00 REMARK 500 6 TYR A 14 -40.66 -131.13 REMARK 500 6 PRO A 41 0.21 -69.73 REMARK 500 6 SER A 44 43.43 -81.89 REMARK 500 6 SER A 47 118.87 -162.17 REMARK 500 6 THR A 61 48.71 33.18 REMARK 500 6 LEU A 75 45.30 -100.22 REMARK 500 6 SER A 76 114.00 -170.31 REMARK 500 7 HIS A 32 -75.01 -89.07 REMARK 500 7 PRO A 41 0.83 -69.81 REMARK 500 7 SER A 44 47.10 -76.92 REMARK 500 7 HIS A 60 95.21 -52.99 REMARK 500 7 SER A 76 116.09 -170.85 REMARK 500 8 SER A 3 153.93 -44.54 REMARK 500 8 GLU A 13 33.56 -94.38 REMARK 500 8 TYR A 14 -39.13 -130.05 REMARK 500 8 LEU A 29 -26.14 -38.74 REMARK 500 8 GLU A 35 -51.19 -124.50 REMARK 500 8 SER A 44 31.48 -84.36 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 12 SG REMARK 620 2 CYS A 15 SG 120.4 REMARK 620 3 HIS A 28 NE2 103.9 101.7 REMARK 620 4 HIS A 32 NE2 115.9 104.8 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 40 SG REMARK 620 2 CYS A 43 SG 119.7 REMARK 620 3 HIS A 56 NE2 100.2 108.8 REMARK 620 4 HIS A 60 NE2 103.7 120.0 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 67 SG REMARK 620 2 CYS A 70 SG 105.6 REMARK 620 3 HIS A 83 NE2 109.2 97.7 REMARK 620 4 HIS A 88 NE2 109.4 109.0 124.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11488 RELATED DB: BMRB REMARK 900 RELATED ID: 2RSI RELATED DB: PDB REMARK 900 RELATED ID: 2RSH RELATED DB: PDB DBREF 2RSJ A 8 92 UNP Q9P243 ZFAT_HUMAN 269 353 SEQADV 2RSJ GLY A 1 UNP Q9P243 EXPRESSION TAG SEQADV 2RSJ SER A 2 UNP Q9P243 EXPRESSION TAG SEQADV 2RSJ SER A 3 UNP Q9P243 EXPRESSION TAG SEQADV 2RSJ GLY A 4 UNP Q9P243 EXPRESSION TAG SEQADV 2RSJ SER A 5 UNP Q9P243 EXPRESSION TAG SEQADV 2RSJ SER A 6 UNP Q9P243 EXPRESSION TAG SEQADV 2RSJ GLY A 7 UNP Q9P243 EXPRESSION TAG SEQRES 1 A 92 GLY SER SER GLY SER SER GLY LYS ILE PHE THR CYS GLU SEQRES 2 A 92 TYR CYS ASN LYS VAL PHE LYS PHE LYS HIS SER LEU GLN SEQRES 3 A 92 ALA HIS LEU ARG ILE HIS THR ASN GLU LYS PRO TYR LYS SEQRES 4 A 92 CYS PRO GLN CYS SER TYR ALA SER ALA ILE LYS ALA ASN SEQRES 5 A 92 LEU ASN VAL HIS LEU ARG LYS HIS THR GLY GLU LYS PHE SEQRES 6 A 92 ALA CYS ASP TYR CYS SER PHE THR CYS LEU SER LYS GLY SEQRES 7 A 92 HIS LEU LYS VAL HIS ILE GLU ARG VAL HIS LYS LYS ILE SEQRES 8 A 92 LYS HET ZN A 101 1 HET ZN A 102 1 HET ZN A 103 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 1 PHE A 21 LEU A 29 1 9 HELIX 2 2 ARG A 30 HIS A 32 5 3 HELIX 3 3 LYS A 50 HIS A 60 1 11 HELIX 4 4 LYS A 77 VAL A 87 1 11 SHEET 1 A 2 PHE A 10 THR A 11 0 SHEET 2 A 2 VAL A 18 PHE A 19 -1 O PHE A 19 N PHE A 10 SHEET 1 B 2 PHE A 65 ALA A 66 0 SHEET 2 B 2 THR A 73 CYS A 74 -1 O CYS A 74 N PHE A 65 LINK SG CYS A 12 ZN ZN A 101 1555 1555 2.33 LINK SG CYS A 15 ZN ZN A 101 1555 1555 2.19 LINK NE2 HIS A 28 ZN ZN A 101 1555 1555 2.09 LINK NE2 HIS A 32 ZN ZN A 101 1555 1555 2.05 LINK SG CYS A 40 ZN ZN A 102 1555 1555 2.38 LINK SG CYS A 43 ZN ZN A 102 1555 1555 2.20 LINK NE2 HIS A 56 ZN ZN A 102 1555 1555 2.10 LINK NE2 HIS A 60 ZN ZN A 102 1555 1555 2.04 LINK SG CYS A 67 ZN ZN A 103 1555 1555 2.33 LINK SG CYS A 70 ZN ZN A 103 1555 1555 2.32 LINK NE2 HIS A 83 ZN ZN A 103 1555 1555 2.09 LINK NE2 HIS A 88 ZN ZN A 103 1555 1555 1.99 SITE 1 AC1 5 CYS A 12 TYR A 14 CYS A 15 HIS A 28 SITE 2 AC1 5 HIS A 32 SITE 1 AC2 5 CYS A 40 CYS A 43 TYR A 45 HIS A 56 SITE 2 AC2 5 HIS A 60 SITE 1 AC3 4 CYS A 67 CYS A 70 HIS A 83 HIS A 88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1