HEADER NUCLEAR PROTEIN 18-APR-12 2RSN TITLE SOLUTION STRUCTURE OF THE CHROMODOMAIN OF CHP1 IN COMPLEX WITH H3K9ME3 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMO DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CHROMO DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE FROM HISTONE H3; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972; SOURCE 6 GENE: CHP1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PCOLD; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 14 ORGANISM_COMMON: FISSION YEAST; SOURCE 15 ORGANISM_TAXID: 4896; SOURCE 16 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS CHROMODOMAIN, PROTEIN-PEPTIDE COMPLEX, RNA-MEDIATED GENE SILENCING, KEYWDS 2 CHROMOSOMAL PROTEIN, METHYLATION, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.SHIMOJO,Y.NISHIMURA REVDAT 1 29-AUG-12 2RSN 0 JRNL AUTH M.ISHIDA,H.SHIMOJO,A.HAYASHI,R.KAWAGUCHI,Y.OHTANI,K.UEGAKI, JRNL AUTH 2 Y.NISHIMURA,J.NAKAYAMA JRNL TITL INTRINSIC NUCLEIC ACID-BINDING ACTIVITY OF CHP1 CHROMODOMAIN JRNL TITL 2 IS REQUIRED FOR HETEROCHROMATIC GENE SILENCING JRNL REF MOL.CELL V. 47 228 2012 JRNL REFN ISSN 1097-2765 JRNL PMID 22727667 JRNL DOI 10.1016/J.MOLCEL.2012.05.017 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, CNS, CYANA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS), (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB150235. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-0.5MM [U-99% 13C; U-99% 15N] REMARK 210 CHP1_CHROMODOMAIN-1, 0.3-0.5MM REMARK 210 HISTONE_H3K9ME3-2, 20MM POTASSIUM REMARK 210 PHOSPHATE-3, 10MM SODIUM CHLORIDE REMARK 210 -4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D HN(CA)CO; REMARK 210 3D CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-COSY; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 13C/15N FILTERED REMARK 210 NOESY; 2D 13C/15N FLLTERD NOESY; REMARK 210 2D 13C/15N FILTERD TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, OLIVIA, ARIA, CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 20 HH21 ARG B 8 1.57 REMARK 500 HZ1 LYS A 71 OXT LYS A 75 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 M3L B 9 107.92 78.48 REMARK 500 2 ASP A 26 178.84 179.70 REMARK 500 2 ALA A 63 31.79 -91.17 REMARK 500 2 M3L B 9 6.50 86.95 REMARK 500 3 M3L B 9 101.01 84.96 REMARK 500 3 SER B 10 89.54 -66.71 REMARK 500 4 ALA A 63 31.57 -92.10 REMARK 500 4 M3L B 9 110.65 69.49 REMARK 500 5 PRO A 8 87.41 -67.81 REMARK 500 5 M3L B 9 92.25 73.44 REMARK 500 5 SER B 10 96.53 -64.10 REMARK 500 6 PRO A 6 175.23 -56.20 REMARK 500 6 PRO A 8 109.74 -9.35 REMARK 500 6 M3L B 9 91.37 89.06 REMARK 500 7 M3L B 9 78.02 91.41 REMARK 500 8 ALA A 63 32.57 -92.12 REMARK 500 8 M3L B 9 74.94 85.37 REMARK 500 8 SER B 10 99.21 -62.25 REMARK 500 9 M3L B 9 86.04 79.18 REMARK 500 10 ALA A 63 30.50 -93.36 REMARK 500 10 M3L B 9 105.93 81.38 REMARK 500 11 ALA A 63 30.41 -92.60 REMARK 500 11 M3L B 9 93.96 82.92 REMARK 500 11 SER B 10 90.32 -63.38 REMARK 500 12 ALA A 63 30.85 -90.78 REMARK 500 12 M3L B 9 94.07 72.32 REMARK 500 13 ASP A 26 178.70 179.99 REMARK 500 13 M3L B 9 76.93 87.52 REMARK 500 13 SER B 10 90.33 -67.51 REMARK 500 14 PRO A 8 99.39 -61.74 REMARK 500 14 M3L B 9 99.35 91.13 REMARK 500 15 ALA A 63 31.25 -94.01 REMARK 500 15 M3L B 9 97.04 94.79 REMARK 500 15 SER B 10 -97.19 -64.18 REMARK 500 16 ALA A 63 30.83 -97.26 REMARK 500 16 ARG B 8 -70.68 -61.30 REMARK 500 16 M3L B 9 96.90 83.13 REMARK 500 17 ALA A 63 30.68 -98.90 REMARK 500 17 M3L B 9 86.61 88.30 REMARK 500 17 SER B 10 90.90 -61.98 REMARK 500 18 THR A 17 23.78 -79.45 REMARK 500 18 ALA A 63 32.85 -94.81 REMARK 500 18 M3L B 9 108.63 75.67 REMARK 500 19 ALA A 63 31.24 -92.56 REMARK 500 19 M3L B 9 93.99 88.05 REMARK 500 20 PRO A 8 99.74 -68.18 REMARK 500 20 M3L B 9 90.85 90.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11496 RELATED DB: BMRB REMARK 900 RELATED ID: 2RSO RELATED DB: PDB DBREF 2RSN A 1 75 UNP Q10103 CHP1_SCHPO 1 75 DBREF 2RSN B 1 18 PDB 2RSN 2RSN 1 18 SEQRES 1 A 75 MET VAL SER VAL LYS PRO LEU PRO ASP ILE ASP SER ASN SEQRES 2 A 75 GLU GLY GLU THR ASP ALA ASP VAL TYR GLU VAL GLU ASP SEQRES 3 A 75 ILE LEU ALA ASP ARG VAL ASN LYS ASN GLY ILE ASN GLU SEQRES 4 A 75 TYR TYR ILE LYS TRP ALA GLY TYR ASP TRP TYR ASP ASN SEQRES 5 A 75 THR TRP GLU PRO GLU GLN ASN LEU PHE GLY ALA GLU LYS SEQRES 6 A 75 VAL LEU LYS LYS TRP LYS LYS ARG LYS LYS SEQRES 1 B 18 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 B 18 LYS ALA PRO ARG TYR MODRES 2RSN M3L B 9 LYS N-TRIMETHYLLYSINE HET M3L B 9 31 HETNAM M3L N-TRIMETHYLLYSINE FORMUL 2 M3L C9 H21 N2 O2 1+ HELIX 1 1 THR A 17 VAL A 21 5 5 HELIX 2 2 ASP A 48 ASN A 52 5 5 HELIX 3 3 GLN A 58 PHE A 61 5 4 HELIX 4 4 ALA A 63 LYS A 74 1 12 SHEET 1 A 4 THR A 53 PRO A 56 0 SHEET 2 A 4 ASN A 38 ALA A 45 -1 N ILE A 42 O THR A 53 SHEET 3 A 4 TYR A 22 VAL A 32 -1 N LEU A 28 O TYR A 41 SHEET 4 A 4 GLN B 5 ALA B 7 -1 O ALA B 7 N TYR A 22 LINK C ARG B 8 N M3L B 9 1555 1555 1.34 LINK C M3L B 9 N SER B 10 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1