data_2RTV # _entry.id 2RTV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2RTV pdb_00002rtv 10.2210/pdb2rtv/pdb RCSB RCSB150260 ? ? BMRB 21044 ? 10.13018/BMR21044 WWPDB D_1000150260 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-19 2 'Structure model' 1 1 2014-03-12 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq_dif 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 9 4 'Structure model' pdbx_entry_details 10 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_struct_ref_seq_dif.details' 7 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2RTV _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-09-19 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 11538 BMRB 'Tachyplesin I in the presence of lipopolysaccharide' unspecified 11539 BMRB . unspecified 2MDB PDB . unspecified 21044 BMRB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kushibiki, T.' 1 'Kamiya, M.' 2 'Aizawa, T.' 3 'Kumaki, Y.' 4 'Kikukawa, T.' 5 'Mizuguchi, M.' 6 'Demura, M.' 7 'Kawabata, S.I.' 8 'Kawano, K.' 9 # _citation.id primary _citation.title 'Interaction between tachyplesin I, an antimicrobial peptide derived from horseshoe crab, and lipopolysaccharide.' _citation.journal_abbrev Biochim.Biophys.Acta _citation.journal_volume 1844 _citation.page_first 527 _citation.page_last 534 _citation.year 2014 _citation.journal_id_ASTM BBACAQ _citation.country NE _citation.journal_id_ISSN 0006-3002 _citation.journal_id_CSD 0113 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24389234 _citation.pdbx_database_id_DOI 10.1016/j.bbapap.2013.12.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kushibiki, T.' 1 ? primary 'Kamiya, M.' 2 ? primary 'Aizawa, T.' 3 ? primary 'Kumaki, Y.' 4 ? primary 'Kikukawa, T.' 5 ? primary 'Mizuguchi, M.' 6 ? primary 'Demura, M.' 7 ? primary 'Kawabata, S.I.' 8 ? primary 'Kawano, K.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Tachyplesin-1 _entity.formula_weight 2272.814 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Tachyplesin I' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'KWCFRVCYRGICYRRCR(NH2)' _entity_poly.pdbx_seq_one_letter_code_can KWCFRVCYRGICYRRCRX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 TRP n 1 3 CYS n 1 4 PHE n 1 5 ARG n 1 6 VAL n 1 7 CYS n 1 8 TYR n 1 9 ARG n 1 10 GLY n 1 11 ILE n 1 12 CYS n 1 13 TYR n 1 14 ARG n 1 15 ARG n 1 16 CYS n 1 17 ARG n 1 18 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Tachypleus tridentatus' _pdbx_entity_src_syn.organism_common_name 'Chinese horseshoe crab,Japanese horseshoe crab' _pdbx_entity_src_syn.ncbi_taxonomy_id 6853 _pdbx_entity_src_syn.details 'The peptide was chemically synthesized.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 TRP 2 2 2 TRP TRP A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 TYR 8 8 8 TYR TYR A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 NH2 18 18 18 NH2 NH2 A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2RTV _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2RTV _struct.title 'Tachyplesin I in water' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2RTV _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TAC1_TACTR _struct_ref.pdbx_db_accession P14213 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KWCFRVCYRGICYRRCR _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2RTV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P14213 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 40 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 17 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2RTV _struct_ref_seq_dif.mon_id NH2 _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 18 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P14213 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details amidation _struct_ref_seq_dif.pdbx_auth_seq_num 18 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 3 A CYS 16 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 12 SG ? ? A CYS 7 A CYS 12 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale both ? A ARG 17 C ? ? ? 1_555 A NH2 18 N ? ? A ARG 17 A NH2 18 1_555 ? ? ? ? ? ? ? 1.327 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 18 ? ARG A 17 ? NH2 A 18 ? 1_555 ARG A 17 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation' 2 CYS A 3 ? CYS A 16 ? CYS A 3 ? 1_555 CYS A 16 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 7 ? CYS A 12 ? CYS A 7 ? 1_555 CYS A 12 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 3 ? CYS A 7 ? CYS A 3 CYS A 7 A 2 CYS A 12 ? CYS A 16 ? CYS A 12 CYS A 16 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id PHE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 4 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 4 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ARG _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 15 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 15 # _pdbx_entry_details.entry_id 2RTV _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 16 ? ? -159.94 79.27 2 4 CYS A 12 ? ? -160.05 79.78 3 5 CYS A 12 ? ? -160.10 109.08 4 7 CYS A 16 ? ? -159.38 80.13 5 8 VAL A 6 ? ? -160.13 111.84 6 11 TRP A 2 ? ? -142.39 -47.29 7 12 CYS A 16 ? ? -145.02 31.58 8 13 PHE A 4 ? ? -106.15 -169.44 9 15 TRP A 2 ? ? -142.30 -68.19 10 15 ARG A 15 ? ? -159.24 89.72 11 16 CYS A 16 ? ? -153.81 45.56 12 20 PHE A 4 ? ? -107.22 79.35 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2RTV _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2RTV _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '1 mM Tachyplesin I-1, 90 % H2O, 10 % D2O, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'Tachyplesin I-1' 1 ? mM ? 1 H2O-2 90 ? % ? 1 D2O-3 10 ? % ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 3.8 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 308 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H NOESY' # _pdbx_nmr_refine.entry_id 2RTV _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 1 ? 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 CYS N N N N 28 CYS CA C N R 29 CYS C C N N 30 CYS O O N N 31 CYS CB C N N 32 CYS SG S N N 33 CYS OXT O N N 34 CYS H H N N 35 CYS H2 H N N 36 CYS HA H N N 37 CYS HB2 H N N 38 CYS HB3 H N N 39 CYS HG H N N 40 CYS HXT H N N 41 GLY N N N N 42 GLY CA C N N 43 GLY C C N N 44 GLY O O N N 45 GLY OXT O N N 46 GLY H H N N 47 GLY H2 H N N 48 GLY HA2 H N N 49 GLY HA3 H N N 50 GLY HXT H N N 51 ILE N N N N 52 ILE CA C N S 53 ILE C C N N 54 ILE O O N N 55 ILE CB C N S 56 ILE CG1 C N N 57 ILE CG2 C N N 58 ILE CD1 C N N 59 ILE OXT O N N 60 ILE H H N N 61 ILE H2 H N N 62 ILE HA H N N 63 ILE HB H N N 64 ILE HG12 H N N 65 ILE HG13 H N N 66 ILE HG21 H N N 67 ILE HG22 H N N 68 ILE HG23 H N N 69 ILE HD11 H N N 70 ILE HD12 H N N 71 ILE HD13 H N N 72 ILE HXT H N N 73 LYS N N N N 74 LYS CA C N S 75 LYS C C N N 76 LYS O O N N 77 LYS CB C N N 78 LYS CG C N N 79 LYS CD C N N 80 LYS CE C N N 81 LYS NZ N N N 82 LYS OXT O N N 83 LYS H H N N 84 LYS H2 H N N 85 LYS HA H N N 86 LYS HB2 H N N 87 LYS HB3 H N N 88 LYS HG2 H N N 89 LYS HG3 H N N 90 LYS HD2 H N N 91 LYS HD3 H N N 92 LYS HE2 H N N 93 LYS HE3 H N N 94 LYS HZ1 H N N 95 LYS HZ2 H N N 96 LYS HZ3 H N N 97 LYS HXT H N N 98 NH2 N N N N 99 NH2 HN1 H N N 100 NH2 HN2 H N N 101 PHE N N N N 102 PHE CA C N S 103 PHE C C N N 104 PHE O O N N 105 PHE CB C N N 106 PHE CG C Y N 107 PHE CD1 C Y N 108 PHE CD2 C Y N 109 PHE CE1 C Y N 110 PHE CE2 C Y N 111 PHE CZ C Y N 112 PHE OXT O N N 113 PHE H H N N 114 PHE H2 H N N 115 PHE HA H N N 116 PHE HB2 H N N 117 PHE HB3 H N N 118 PHE HD1 H N N 119 PHE HD2 H N N 120 PHE HE1 H N N 121 PHE HE2 H N N 122 PHE HZ H N N 123 PHE HXT H N N 124 TRP N N N N 125 TRP CA C N S 126 TRP C C N N 127 TRP O O N N 128 TRP CB C N N 129 TRP CG C Y N 130 TRP CD1 C Y N 131 TRP CD2 C Y N 132 TRP NE1 N Y N 133 TRP CE2 C Y N 134 TRP CE3 C Y N 135 TRP CZ2 C Y N 136 TRP CZ3 C Y N 137 TRP CH2 C Y N 138 TRP OXT O N N 139 TRP H H N N 140 TRP H2 H N N 141 TRP HA H N N 142 TRP HB2 H N N 143 TRP HB3 H N N 144 TRP HD1 H N N 145 TRP HE1 H N N 146 TRP HE3 H N N 147 TRP HZ2 H N N 148 TRP HZ3 H N N 149 TRP HH2 H N N 150 TRP HXT H N N 151 TYR N N N N 152 TYR CA C N S 153 TYR C C N N 154 TYR O O N N 155 TYR CB C N N 156 TYR CG C Y N 157 TYR CD1 C Y N 158 TYR CD2 C Y N 159 TYR CE1 C Y N 160 TYR CE2 C Y N 161 TYR CZ C Y N 162 TYR OH O N N 163 TYR OXT O N N 164 TYR H H N N 165 TYR H2 H N N 166 TYR HA H N N 167 TYR HB2 H N N 168 TYR HB3 H N N 169 TYR HD1 H N N 170 TYR HD2 H N N 171 TYR HE1 H N N 172 TYR HE2 H N N 173 TYR HH H N N 174 TYR HXT H N N 175 VAL N N N N 176 VAL CA C N S 177 VAL C C N N 178 VAL O O N N 179 VAL CB C N N 180 VAL CG1 C N N 181 VAL CG2 C N N 182 VAL OXT O N N 183 VAL H H N N 184 VAL H2 H N N 185 VAL HA H N N 186 VAL HB H N N 187 VAL HG11 H N N 188 VAL HG12 H N N 189 VAL HG13 H N N 190 VAL HG21 H N N 191 VAL HG22 H N N 192 VAL HG23 H N N 193 VAL HXT H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 CYS N CA sing N N 27 CYS N H sing N N 28 CYS N H2 sing N N 29 CYS CA C sing N N 30 CYS CA CB sing N N 31 CYS CA HA sing N N 32 CYS C O doub N N 33 CYS C OXT sing N N 34 CYS CB SG sing N N 35 CYS CB HB2 sing N N 36 CYS CB HB3 sing N N 37 CYS SG HG sing N N 38 CYS OXT HXT sing N N 39 GLY N CA sing N N 40 GLY N H sing N N 41 GLY N H2 sing N N 42 GLY CA C sing N N 43 GLY CA HA2 sing N N 44 GLY CA HA3 sing N N 45 GLY C O doub N N 46 GLY C OXT sing N N 47 GLY OXT HXT sing N N 48 ILE N CA sing N N 49 ILE N H sing N N 50 ILE N H2 sing N N 51 ILE CA C sing N N 52 ILE CA CB sing N N 53 ILE CA HA sing N N 54 ILE C O doub N N 55 ILE C OXT sing N N 56 ILE CB CG1 sing N N 57 ILE CB CG2 sing N N 58 ILE CB HB sing N N 59 ILE CG1 CD1 sing N N 60 ILE CG1 HG12 sing N N 61 ILE CG1 HG13 sing N N 62 ILE CG2 HG21 sing N N 63 ILE CG2 HG22 sing N N 64 ILE CG2 HG23 sing N N 65 ILE CD1 HD11 sing N N 66 ILE CD1 HD12 sing N N 67 ILE CD1 HD13 sing N N 68 ILE OXT HXT sing N N 69 LYS N CA sing N N 70 LYS N H sing N N 71 LYS N H2 sing N N 72 LYS CA C sing N N 73 LYS CA CB sing N N 74 LYS CA HA sing N N 75 LYS C O doub N N 76 LYS C OXT sing N N 77 LYS CB CG sing N N 78 LYS CB HB2 sing N N 79 LYS CB HB3 sing N N 80 LYS CG CD sing N N 81 LYS CG HG2 sing N N 82 LYS CG HG3 sing N N 83 LYS CD CE sing N N 84 LYS CD HD2 sing N N 85 LYS CD HD3 sing N N 86 LYS CE NZ sing N N 87 LYS CE HE2 sing N N 88 LYS CE HE3 sing N N 89 LYS NZ HZ1 sing N N 90 LYS NZ HZ2 sing N N 91 LYS NZ HZ3 sing N N 92 LYS OXT HXT sing N N 93 NH2 N HN1 sing N N 94 NH2 N HN2 sing N N 95 PHE N CA sing N N 96 PHE N H sing N N 97 PHE N H2 sing N N 98 PHE CA C sing N N 99 PHE CA CB sing N N 100 PHE CA HA sing N N 101 PHE C O doub N N 102 PHE C OXT sing N N 103 PHE CB CG sing N N 104 PHE CB HB2 sing N N 105 PHE CB HB3 sing N N 106 PHE CG CD1 doub Y N 107 PHE CG CD2 sing Y N 108 PHE CD1 CE1 sing Y N 109 PHE CD1 HD1 sing N N 110 PHE CD2 CE2 doub Y N 111 PHE CD2 HD2 sing N N 112 PHE CE1 CZ doub Y N 113 PHE CE1 HE1 sing N N 114 PHE CE2 CZ sing Y N 115 PHE CE2 HE2 sing N N 116 PHE CZ HZ sing N N 117 PHE OXT HXT sing N N 118 TRP N CA sing N N 119 TRP N H sing N N 120 TRP N H2 sing N N 121 TRP CA C sing N N 122 TRP CA CB sing N N 123 TRP CA HA sing N N 124 TRP C O doub N N 125 TRP C OXT sing N N 126 TRP CB CG sing N N 127 TRP CB HB2 sing N N 128 TRP CB HB3 sing N N 129 TRP CG CD1 doub Y N 130 TRP CG CD2 sing Y N 131 TRP CD1 NE1 sing Y N 132 TRP CD1 HD1 sing N N 133 TRP CD2 CE2 doub Y N 134 TRP CD2 CE3 sing Y N 135 TRP NE1 CE2 sing Y N 136 TRP NE1 HE1 sing N N 137 TRP CE2 CZ2 sing Y N 138 TRP CE3 CZ3 doub Y N 139 TRP CE3 HE3 sing N N 140 TRP CZ2 CH2 doub Y N 141 TRP CZ2 HZ2 sing N N 142 TRP CZ3 CH2 sing Y N 143 TRP CZ3 HZ3 sing N N 144 TRP CH2 HH2 sing N N 145 TRP OXT HXT sing N N 146 TYR N CA sing N N 147 TYR N H sing N N 148 TYR N H2 sing N N 149 TYR CA C sing N N 150 TYR CA CB sing N N 151 TYR CA HA sing N N 152 TYR C O doub N N 153 TYR C OXT sing N N 154 TYR CB CG sing N N 155 TYR CB HB2 sing N N 156 TYR CB HB3 sing N N 157 TYR CG CD1 doub Y N 158 TYR CG CD2 sing Y N 159 TYR CD1 CE1 sing Y N 160 TYR CD1 HD1 sing N N 161 TYR CD2 CE2 doub Y N 162 TYR CD2 HD2 sing N N 163 TYR CE1 CZ doub Y N 164 TYR CE1 HE1 sing N N 165 TYR CE2 CZ sing Y N 166 TYR CE2 HE2 sing N N 167 TYR CZ OH sing N N 168 TYR OH HH sing N N 169 TYR OXT HXT sing N N 170 VAL N CA sing N N 171 VAL N H sing N N 172 VAL N H2 sing N N 173 VAL CA C sing N N 174 VAL CA CB sing N N 175 VAL CA HA sing N N 176 VAL C O doub N N 177 VAL C OXT sing N N 178 VAL CB CG1 sing N N 179 VAL CB CG2 sing N N 180 VAL CB HB sing N N 181 VAL CG1 HG11 sing N N 182 VAL CG1 HG12 sing N N 183 VAL CG1 HG13 sing N N 184 VAL CG2 HG21 sing N N 185 VAL CG2 HG22 sing N N 186 VAL CG2 HG23 sing N N 187 VAL OXT HXT sing N N 188 # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker DMX 1 'Bruker DMX' 600 JEOL ECA 2 'JEOL ECA' # _atom_sites.entry_id 2RTV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_