HEADER DE NOVO PROTEIN 23-NOV-13 2RU5 TITLE DESIGNED ARMADILLO REPEAT PROTEIN FRAGMENT (MAII) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARMADILLO REPEAT PROTEIN C-TERMINAL FRAGMENT; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLIC_CR KEYWDS SOLENOID REPEAT, ARMADILLO REPEAT MOTIF, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.ZERBE,M.T.CHRISTEN,A.PLUECKTHUN,R.P.WATSON REVDAT 3 15-MAY-24 2RU5 1 REMARK REVDAT 2 14-JUN-23 2RU5 1 REMARK REVDAT 1 23-JUL-14 2RU5 0 JRNL AUTH R.P.WATSON,M.T.CHRISTEN,C.EWALD,F.BUMBAK,C.REICHEN, JRNL AUTH 2 M.MIHAJLOVIC,E.SCHMIDT,P.GUNTERT,A.CAFLISCH,A.PLUCKTHUN, JRNL AUTH 3 O.ZERBE JRNL TITL SPONTANEOUS SELF-ASSEMBLY OF ENGINEERED ARMADILLO REPEAT JRNL TITL 2 PROTEIN FRAGMENTS INTO A FOLDED STRUCTURE JRNL REF STRUCTURE V. 22 985 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24931467 JRNL DOI 10.1016/J.STR.2014.05.002 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, X-PLOR NIH 2.32, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE CALCULATION IN VACUO, REMARK 3 REFINEMENT IN EXPLICIT TIP3P WATER REMARK 4 REMARK 4 2RU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000150270. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75 MM [U-13C; U-15N] MA-1, 150 REMARK 210 MM SODIUM PHOSPHATE-2, 150 MM REMARK 210 SODIUM CHLORIDE-3, 2 % GLYCEROL- REMARK 210 4, 1 MM TMSP-5, 0.02 % SODIUM REMARK 210 AZIDE-6, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO; 3D HNCACO; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, CARA 1.8.4, CCPNMR REMARK 210 2.3.1, UNIO 2.0.2, CYANA 3.96A, REMARK 210 TALOS-N 4.01 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 191 HZ1 LYS B 195 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA B 122 -63.78 -90.42 REMARK 500 1 ALA B 126 -71.29 -127.56 REMARK 500 1 LEU B 129 -177.76 66.11 REMARK 500 1 GLU B 160 -63.25 69.42 REMARK 500 1 HIS B 180 151.45 -46.96 REMARK 500 3 ASN B 117 -77.65 -140.49 REMARK 500 3 GLU B 118 90.13 58.61 REMARK 500 3 ALA B 122 82.42 -154.54 REMARK 500 3 ILE B 124 133.13 76.20 REMARK 500 4 ASN B 159 -162.85 60.86 REMARK 500 5 ALA B 122 -40.21 -156.19 REMARK 500 5 VAL B 123 -26.44 174.28 REMARK 500 5 SER B 138 160.87 -45.43 REMARK 500 5 ASN B 159 -95.26 39.48 REMARK 500 6 ASN B 117 78.52 -164.06 REMARK 500 6 GLN B 121 -65.34 -96.70 REMARK 500 6 ALA B 122 -81.40 55.24 REMARK 500 6 ALA B 128 -42.19 70.95 REMARK 500 6 PRO B 130 -17.74 -49.68 REMARK 500 6 ASN B 159 -65.41 -132.28 REMARK 500 7 GLN B 119 171.54 176.85 REMARK 500 7 VAL B 123 91.27 -162.62 REMARK 500 7 ASP B 125 -84.78 67.85 REMARK 500 7 ASN B 159 -97.10 57.82 REMARK 500 8 GLU B 118 100.05 47.51 REMARK 500 8 ASP B 125 -81.82 71.96 REMARK 500 8 ALA B 128 74.09 58.43 REMARK 500 8 SER B 138 151.01 -45.74 REMARK 500 8 ASN B 159 -63.00 -17.35 REMARK 500 9 ASP B 125 -68.41 -94.62 REMARK 500 9 ALA B 126 -88.23 57.20 REMARK 500 9 SER B 138 155.82 -45.15 REMARK 500 9 ASN B 159 -104.88 -114.14 REMARK 500 10 GLN B 119 81.45 59.26 REMARK 500 10 SER B 138 156.85 -49.93 REMARK 500 10 ASN B 159 -86.87 -113.94 REMARK 500 11 GLU B 160 -46.13 70.12 REMARK 500 12 GLN B 121 84.76 59.21 REMARK 500 13 ASN B 159 -60.38 -157.09 REMARK 500 13 HIS B 180 151.57 -45.08 REMARK 500 14 VAL B 123 151.89 173.92 REMARK 500 14 ILE B 124 112.95 74.16 REMARK 500 14 LEU B 129 -179.17 65.19 REMARK 500 14 ASN B 159 -87.72 44.83 REMARK 500 15 GLN B 121 -163.12 -115.26 REMARK 500 15 ALA B 126 107.25 -169.84 REMARK 500 15 GLU B 160 -32.18 -139.07 REMARK 500 16 GLU B 118 -164.43 62.67 REMARK 500 16 GLN B 121 87.74 65.95 REMARK 500 16 VAL B 123 -75.18 -77.38 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RU4 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE SAME FRAGMENT AFTER SELF-ASSEMBLY INTO A REMARK 900 COMPLEX WITH FRAGMENT YIIM2 REMARK 900 RELATED ID: 11544 RELATED DB: BMRB DBREF 2RU5 B 116 199 PDB 2RU5 2RU5 116 199 SEQRES 1 B 84 GLY ASN GLU GLN ILE GLN ALA VAL ILE ASP ALA GLY ALA SEQRES 2 B 84 LEU PRO ALA LEU VAL GLN LEU LEU SER SER PRO ASN GLU SEQRES 3 B 84 GLN ILE LEU GLN GLU ALA LEU TRP ALA LEU SER ASN ILE SEQRES 4 B 84 ALA SER GLY GLY ASN GLU GLN LYS GLN ALA VAL LYS GLU SEQRES 5 B 84 ALA GLY ALA LEU GLU LYS LEU GLU GLN LEU GLN SER HIS SEQRES 6 B 84 GLU ASN GLU LYS ILE GLN LYS GLU ALA GLN GLU ALA LEU SEQRES 7 B 84 GLU LYS LEU GLN SER HIS HELIX 1 1 LEU B 129 SER B 138 5 10 HELIX 2 2 ASN B 140 SER B 152 1 13 HELIX 3 3 ASN B 153 GLY B 157 5 5 HELIX 4 4 GLN B 163 GLY B 169 1 7 HELIX 5 5 GLY B 169 GLN B 178 1 10 HELIX 6 6 LYS B 184 GLN B 197 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1