HEADER REPLICATION 29-JAN-14 2RU8 TITLE DNAT C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRIMOSOMAL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SSDNA BINDING DOMAIN, UNP RESIDUES 89-179; COMPND 5 SYNONYM: DNAT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DNAT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS PRIMOSOME, REPLICATION RESTART, DNAT, DNA BINDING, REPLICATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.ABE,J.TANI,S.FUJIYAMA,M.URABE,K.SATO,T.ARAMAKI,T.KATAYAMA,T.UEDA REVDAT 4 14-JUN-23 2RU8 1 REMARK REVDAT 3 24-AUG-22 2RU8 1 JRNL REMARK SEQADV REVDAT 2 22-OCT-14 2RU8 1 JRNL REVDAT 1 08-OCT-14 2RU8 0 JRNL AUTH S.FUJIYAMA,Y.ABE,J.TANI,M.URABE,K.SATO,T.ARAMAKI,T.KATAYAMA, JRNL AUTH 2 T.UEDA JRNL TITL STRUCTURE AND MECHANISM OF THE PRIMOSOME PROTEIN JRNL TITL 2 DNAT-FUNCTIONAL STRUCTURES FOR HOMOTRIMERIZATION, JRNL TITL 3 DISSOCIATION OF SSDNA FROM THE PRIB·SSDNA COMPLEX, AND JRNL TITL 4 FORMATION OF THE DNAT·SSDNA COMPLEX. JRNL REF FEBS J. V. 281 5356 2014 JRNL REFN ISSN 1742-464X JRNL PMID 25265331 JRNL DOI 10.1111/FEBS.13080 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000150273. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 DNAT-1, 20 MM HEPES-2, 90% H2O/ REMARK 210 10% D2O; 0.1 MM [U-99% 15N] DNAT- REMARK 210 3, 20 MM HEPES-4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D HNCO; 3D HNCA; 3D HNCACB; REMARK 210 3D HN(CO)CA; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D REMARK 210 HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, TALOS, NMRDRAW, REMARK 210 OLIVIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 93 35.40 -85.24 REMARK 500 1 LYS A 133 -164.85 -115.52 REMARK 500 1 ASN A 155 99.46 -62.45 REMARK 500 1 LEU A 158 102.94 -170.34 REMARK 500 1 LYS A 160 -67.23 -141.63 REMARK 500 1 ARG A 161 71.37 55.22 REMARK 500 1 ASN A 164 176.44 62.33 REMARK 500 1 THR A 165 71.29 53.81 REMARK 500 1 SER A 167 36.97 -98.60 REMARK 500 1 GLU A 168 95.70 59.86 REMARK 500 1 ILE A 173 79.14 51.43 REMARK 500 1 ARG A 178 111.54 60.91 REMARK 500 2 PRO A 93 39.57 -87.52 REMARK 500 2 ASP A 98 -176.40 -172.56 REMARK 500 2 LYS A 133 -162.66 -102.19 REMARK 500 2 ASN A 155 161.83 62.51 REMARK 500 2 PRO A 159 96.51 -68.67 REMARK 500 2 VAL A 163 -49.84 -146.45 REMARK 500 2 ASN A 164 -176.42 -178.26 REMARK 500 2 SER A 167 170.95 60.00 REMARK 500 2 PRO A 169 -173.73 -53.13 REMARK 500 2 ILE A 173 71.70 54.47 REMARK 500 2 PRO A 174 106.56 -53.63 REMARK 500 2 PHE A 177 168.59 61.49 REMARK 500 2 ARG A 178 178.22 61.10 REMARK 500 3 PRO A 93 38.08 -86.11 REMARK 500 3 LYS A 133 -164.76 -124.46 REMARK 500 3 LYS A 160 145.80 63.01 REMARK 500 3 ARG A 161 92.93 -166.42 REMARK 500 3 VAL A 163 -45.39 -137.68 REMARK 500 3 THR A 165 92.72 60.75 REMARK 500 3 VAL A 166 -46.06 -132.08 REMARK 500 3 SER A 167 80.20 -152.90 REMARK 500 3 ASP A 170 -48.07 -176.87 REMARK 500 3 SER A 171 149.16 61.63 REMARK 500 3 GLN A 172 119.73 62.45 REMARK 500 3 ARG A 178 83.97 61.15 REMARK 500 4 MET A 91 -165.84 -173.77 REMARK 500 4 PRO A 93 35.49 -84.93 REMARK 500 4 LYS A 133 -165.40 -125.14 REMARK 500 4 THR A 165 86.05 53.26 REMARK 500 4 PHE A 177 -54.54 -146.49 REMARK 500 5 PRO A 93 34.12 -84.92 REMARK 500 5 PRO A 115 173.16 -52.30 REMARK 500 5 LYS A 133 -164.13 -115.33 REMARK 500 5 PRO A 159 173.43 -50.50 REMARK 500 5 ASN A 164 162.99 60.68 REMARK 500 5 PRO A 169 78.37 -69.93 REMARK 500 5 SER A 171 -80.04 -95.00 REMARK 500 5 GLN A 172 114.70 -178.71 REMARK 500 REMARK 500 THIS ENTRY HAS 192 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11549 RELATED DB: BMRB DBREF 2RU8 A 89 179 UNP P0A8J2 DNAT_ECOLI 89 179 SEQADV 2RU8 MET A 88 UNP P0A8J2 EXPRESSION TAG SEQADV 2RU8 HIS A 180 UNP P0A8J2 EXPRESSION TAG SEQADV 2RU8 HIS A 181 UNP P0A8J2 EXPRESSION TAG SEQADV 2RU8 HIS A 182 UNP P0A8J2 EXPRESSION TAG SEQADV 2RU8 HIS A 183 UNP P0A8J2 EXPRESSION TAG SEQADV 2RU8 HIS A 184 UNP P0A8J2 EXPRESSION TAG SEQADV 2RU8 HIS A 185 UNP P0A8J2 EXPRESSION TAG SEQRES 1 A 98 MET PHE ALA MET TYR PRO ASP TRP GLN PRO ASP ALA ASP SEQRES 2 A 98 PHE ILE ARG LEU ALA ALA LEU TRP GLY VAL ALA LEU ARG SEQRES 3 A 98 GLU PRO VAL THR THR GLU GLU LEU ALA SER PHE ILE ALA SEQRES 4 A 98 TYR TRP GLN ALA GLU GLY LYS VAL PHE HIS HIS VAL GLN SEQRES 5 A 98 TRP GLN GLN LYS LEU ALA ARG SER LEU GLN ILE GLY ARG SEQRES 6 A 98 ALA SER ASN GLY GLY LEU PRO LYS ARG ASP VAL ASN THR SEQRES 7 A 98 VAL SER GLU PRO ASP SER GLN ILE PRO PRO GLY PHE ARG SEQRES 8 A 98 GLY HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 98 GLY A 109 1 12 HELIX 2 2 THR A 117 GLY A 132 1 16 HELIX 3 3 HIS A 136 ASN A 155 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1