HEADER HYDROLASE/HYDROLASE SUBSTRATE 22-JUN-14 2RUI TITLE SOLUTION STRUCTURE OF THE BACILLUS ANTHRACIS SORTASE A-SUBSTRATE TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPXTG-SITE TRANSPEPTIDASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 57-210; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BOC-LPAT*; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS STR. STERNE; SOURCE 3 ORGANISM_COMMON: ANTHRAX, ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 260799; SOURCE 5 GENE: BAS0654, SRTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS SORTASE, SRTA, TRANSPEPTIDASE, HYDROLASE-HYDROLASE SUBSTRATE COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.H.CHAN,S.YI,M.E.JUNG,R.T.CLUBB REVDAT 3 15-NOV-23 2RUI 1 LINK ATOM REVDAT 2 25-DEC-19 2RUI 1 JRNL REMARK SEQADV LINK REVDAT 1 09-SEP-15 2RUI 0 JRNL AUTH A.H.CHAN,S.W.YI,A.L.TERWILLIGER,A.W.MARESSO,M.E.JUNG, JRNL AUTH 2 R.T.CLUBB JRNL TITL STRUCTURE OF THE BACILLUS ANTHRACIS SORTASE A ENZYME BOUND JRNL TITL 2 TO ITS SORTING SIGNAL: A FLEXIBLE AMINO-TERMINAL APPENDAGE JRNL TITL 3 MODULATES SUBSTRATE ACCESS. JRNL REF J.BIOL.CHEM. V. 290 25461 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26324714 JRNL DOI 10.1074/JBC.M115.670984 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.25, X-PLOR NIH 2.25 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000150282. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.6 MM [U-100% 13C; U-100% 15N] REMARK 210 BASRTA-1, 2.6 MM BOC-LPAT*-2, 50 REMARK 210 MM SODIUM PHOSPHATE-3, 0.01 % REMARK 210 SODIUM AZIDE-4, 93% H2O/7% D2O; REMARK 210 2.6 MM [U-100% 13C; U-100% 15N] REMARK 210 BASRTA-5, 2.6 MM BOC-LPAT*-6, 50 REMARK 210 MM SODIUM PHOSPHATE-7, 0.01 % REMARK 210 SODIUM AZIDE-8, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D C(CO) REMARK 210 NH; 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D HNHA; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HNHB; REMARK 210 3D HCCH-COSY; 3D HCACO; 3D H(CCO) REMARK 210 NH REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MODELFREE, MOLMOL, NMRDRAW, REMARK 210 NMRPIPE, PIPP, PROCHECK, SPARKY, REMARK 210 TALOS, XWINNMR, CARA, UNIO 10 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE (BOC)LPA(B27) PEPTIDE IS PEPTIDE-LIKE, A MEMBER OF INHIBITOR REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: (BOC)LPA(B27) PEPTIDE REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 127 HG SER A 136 1.17 REMARK 500 H GLY A 144 O VAL A 160 1.48 REMARK 500 O GLY A 81 H VAL A 94 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 64 162.31 -47.86 REMARK 500 1 SER A 73 93.65 -59.71 REMARK 500 1 SER A 98 44.50 -89.13 REMARK 500 1 LYS A 131 120.28 -37.72 REMARK 500 1 LEU B 702 77.58 56.32 REMARK 500 1 ALA B 704 178.34 -39.04 REMARK 500 2 ASP A 65 177.51 -52.41 REMARK 500 2 SER A 73 103.01 -59.47 REMARK 500 2 LYS A 131 155.13 -31.93 REMARK 500 2 PRO B 703 -176.83 -65.68 REMARK 500 2 ALA B 704 -177.53 -41.21 REMARK 500 3 SER A 73 100.31 -59.54 REMARK 500 3 LYS A 96 -80.97 -63.79 REMARK 500 3 LYS A 131 154.73 -29.07 REMARK 500 3 PHE A 135 -0.94 68.70 REMARK 500 3 SER A 189 148.72 -170.69 REMARK 500 3 LEU B 702 78.34 57.50 REMARK 500 3 PRO B 703 -165.43 -73.72 REMARK 500 3 ALA B 704 -176.21 -39.64 REMARK 500 4 PRO A 64 170.38 -44.00 REMARK 500 4 SER A 73 97.52 -58.56 REMARK 500 4 ASP A 75 79.11 -103.55 REMARK 500 4 LYS A 96 -83.40 -58.55 REMARK 500 4 LYS A 131 163.66 -41.12 REMARK 500 4 PHE A 135 7.77 59.68 REMARK 500 4 PRO B 703 -169.02 -67.17 REMARK 500 4 ALA B 704 176.73 -33.01 REMARK 500 5 LYS A 96 -79.03 -62.63 REMARK 500 5 LYS A 131 152.69 -40.26 REMARK 500 5 PHE A 135 12.49 56.84 REMARK 500 5 SER A 189 144.95 -172.18 REMARK 500 5 LEU B 702 102.09 56.94 REMARK 500 5 PRO B 703 -165.81 -65.81 REMARK 500 5 ALA B 704 -174.73 -44.50 REMARK 500 6 ALA A 72 -172.55 -69.04 REMARK 500 6 PRO B 703 -173.74 -66.20 REMARK 500 6 ALA B 704 -179.41 -40.04 REMARK 500 7 SER A 73 99.83 -62.09 REMARK 500 7 SER A 98 53.41 -91.30 REMARK 500 7 LYS A 131 159.73 -35.23 REMARK 500 7 LEU B 702 108.85 -42.93 REMARK 500 7 PRO B 703 -173.09 -62.10 REMARK 500 7 ALA B 704 -172.17 -41.70 REMARK 500 8 ALA A 72 -165.77 -67.43 REMARK 500 8 ASP A 75 77.22 -104.21 REMARK 500 8 LYS A 96 -83.44 -66.44 REMARK 500 8 LEU B 702 110.56 -36.33 REMARK 500 8 ALA B 704 -178.23 -37.57 REMARK 500 9 ASP A 65 172.18 -52.99 REMARK 500 9 SER A 73 102.85 -57.80 REMARK 500 REMARK 500 THIS ENTRY HAS 130 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF BOC-LPAT* REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11570 RELATED DB: BMRB DBREF 2RUI A 57 210 UNP Q6I399 Q6I399_BACAN 57 210 DBREF 2RUI B 701 705 PDB 2RUI 2RUI 701 705 SEQADV 2RUI GLY A 53 UNP Q6I399 EXPRESSION TAG SEQADV 2RUI SER A 54 UNP Q6I399 EXPRESSION TAG SEQADV 2RUI HIS A 55 UNP Q6I399 EXPRESSION TAG SEQADV 2RUI MET A 56 UNP Q6I399 EXPRESSION TAG SEQRES 1 A 158 GLY SER HIS MET ASP ALA SER LYS ILE ASP GLN PRO ASP SEQRES 2 A 158 LEU ALA GLU VAL ALA ASN ALA SER LEU ASP LYS LYS GLN SEQRES 3 A 158 VAL ILE GLY ARG ILE SER ILE PRO SER VAL SER LEU GLU SEQRES 4 A 158 LEU PRO VAL LEU LYS SER SER THR GLU LYS ASN LEU LEU SEQRES 5 A 158 SER GLY ALA ALA THR VAL LYS GLU ASN GLN VAL MET GLY SEQRES 6 A 158 LYS GLY ASN TYR ALA LEU ALA GLY HIS ASN MET SER LYS SEQRES 7 A 158 LYS GLY VAL LEU PHE SER ASP ILE ALA SER LEU LYS LYS SEQRES 8 A 158 GLY ASP LYS ILE TYR LEU TYR ASP ASN GLU ASN GLU TYR SEQRES 9 A 158 GLU TYR ALA VAL THR GLY VAL SER GLU VAL THR PRO ASP SEQRES 10 A 158 LYS TRP GLU VAL VAL GLU ASP HIS GLY LYS ASP GLU ILE SEQRES 11 A 158 THR LEU ILE THR CYS VAL SER VAL LYS ASP ASN SER LYS SEQRES 12 A 158 ARG TYR VAL VAL ALA GLY ASP LEU VAL GLY THR LYS ALA SEQRES 13 A 158 LYS LYS SEQRES 1 B 5 BOC LEU PRO ALA B27 MODRES 2RUI B27 B 705 THR (2R,3S) 3-AMINO-4-MERCAPTO-2-BUTANOL HET BOC B 701 16 HET B27 B 705 16 HETNAM BOC TERT-BUTYL HYDROGEN CARBONATE HETNAM B27 (2R,3S) 3-AMINO-4-MERCAPTO-2-BUTANOL HETSYN B27 (2R,3S)-3-AMINO-4-SULFANYLBUTAN-2-OL FORMUL 2 BOC C5 H10 O3 FORMUL 2 B27 C4 H11 N O S HELIX 1 1 ASP A 65 ALA A 72 1 8 HELIX 2 2 ASP A 75 LYS A 77 5 3 HELIX 3 3 PRO A 86 SER A 89 5 4 HELIX 4 4 LYS A 101 GLY A 106 5 6 HELIX 5 5 ASP A 137 LEU A 141 5 5 HELIX 6 6 LYS A 170 GLU A 175 5 6 SHEET 1 A 9 VAL A 79 ILE A 85 0 SHEET 2 A 9 LEU A 90 LEU A 95 -1 O VAL A 94 N GLY A 81 SHEET 3 A 9 ALA A 108 THR A 109 1 O THR A 109 N LEU A 95 SHEET 4 A 9 ASN A 120 ALA A 124 -1 O ALA A 124 N ALA A 108 SHEET 5 A 9 GLU A 181 ILE A 185 1 O GLU A 181 N TYR A 121 SHEET 6 A 9 ARG A 196 ALA A 208 -1 O GLY A 201 N ILE A 182 SHEET 7 A 9 ASN A 154 VAL A 166 -1 N ALA A 159 O ASP A 202 SHEET 8 A 9 LYS A 146 ASP A 151 -1 N ILE A 147 O TYR A 158 SHEET 9 A 9 VAL A 79 ILE A 85 -1 N ARG A 82 O TYR A 150 LINK SG CYS A 187 SG B27 B 705 1555 1555 2.02 LINK C BOC B 701 N LEU B 702 1555 1555 1.33 LINK C ALA B 704 N B27 B 705 1555 1555 1.33 SITE 1 AC1 13 SER A 59 LEU A 103 VAL A 110 ALA A 124 SITE 2 AC1 13 GLY A 125 HIS A 126 PRO A 168 LYS A 170 SITE 3 AC1 13 TRP A 171 ILE A 185 THR A 186 CYS A 187 SITE 4 AC1 13 ARG A 196 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1