HEADER PROTEIN BINDING 24-JUL-14 2RUJ TITLE SOLUTION STRUCTURE OF MTSL SPIN-LABELED SCHIZOSACCHAROMYCES POMBE SIN1 TITLE 2 CRIM DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRESS-ACTIVATED MAP KINASE-INTERACTING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 247-400; COMPND 5 SYNONYM: SAPK-INTERACTING PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE 972H-; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: SIN1, SPAPYUG7.02C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PCOLD-GST KEYWDS SIN1, CRIM DOMAIN, TORC2, PRE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.FURUITA,S.KATAOKA,T.SUGIKI,N.KOBAYASHI,T.IKEGAMI,K.SHIOZAKI, AUTHOR 2 T.FUJIWARA,C.KOJIMA REVDAT 1 29-JUL-15 2RUJ 0 JRNL AUTH K.FURUITA,S.KATAOKA,T.SUGIKI,Y.HATTORI,N.KOBAYASHI, JRNL AUTH 2 T.IKEGAMI,K.SHIOZAKI,T.FUJIWARA,C.KOJIMA JRNL TITL UTILIZATION OF PARAMAGNETIC RELAXATION ENHANCEMENTS FOR JRNL TITL 2 HIGH-RESOLUTION NMR STRUCTURE DETERMINATION OF A SOLUBLE JRNL TITL 3 LOOP-RICH PROTEIN WITH SPARSE NOE DISTANCE RESTRAINTS JRNL REF J.BIOMOL.NMR V. 61 55 2015 JRNL REFN ISSN 0925-2738 JRNL PMID 25428765 JRNL DOI 10.1007/S10858-014-9882-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.31 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RUJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-AUG-14. REMARK 100 THE RCSB ID CODE IS RCSB150283. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 15N] ENTITY_1-1, REMARK 210 50 MM POTASSIUM PHOSPHATE-2, 50 REMARK 210 MM POTASSIUM CHLORIDE-3, 90 % H2O REMARK 210 -4, 10 % D2O-5, 1 MM DTT-6, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-100% 13C; REMARK 210 U-100% 15N] ENTITY_1-7, 50 MM REMARK 210 POTASSIUM PHOSPHATE-8, 50 MM REMARK 210 POTASSIUM CHLORIDE-9, 1 MM DTT- REMARK 210 10, 90 % H2O-11, 10 % D2O-12, 90% REMARK 210 H2O/10% D2O; 0.5 MM ENTITY_1-13, REMARK 210 50 MM POTASSIUM PHOSPHATE-14, 50 REMARK 210 MM POTASSIUM CHLORIDE-15, 90 % REMARK 210 H2O-16, 10 % D2O-17, 1 MM DTT-18, REMARK 210 90% H2O/10% D2O; 0.5 MM [U-100% REMARK 210 15N] ENTITY_1-19, 50 MM POTASSIUM REMARK 210 PHOSPHATE-20, 50 MM POTASSIUM REMARK 210 CHLORIDE-21, 90 % H2O-22, 10 % REMARK 210 D2O-23, 1 MM DTT-24, 15 MG/ML PF1 REMARK 210 PHAGE-25, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HN(CA)CB; 3D REMARK 210 HBHA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 HN(COCA)CB; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.95, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 279 H R1A A 282 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 245 126.42 60.54 REMARK 500 1 ALA A 253 78.33 -156.85 REMARK 500 1 ALA A 257 -6.38 -173.45 REMARK 500 1 GLU A 263 -101.73 -70.26 REMARK 500 1 HIS A 264 12.78 45.15 REMARK 500 1 PHE A 278 -51.85 -121.74 REMARK 500 1 SER A 299 90.04 -42.69 REMARK 500 1 VAL A 314 -159.34 -92.82 REMARK 500 1 VAL A 333 114.60 56.85 REMARK 500 1 ASN A 342 109.02 -41.66 REMARK 500 1 LEU A 364 -111.09 31.23 REMARK 500 1 ASP A 365 -174.54 97.92 REMARK 500 1 ARG A 366 -10.34 -47.80 REMARK 500 1 R1A A 371 -6.23 -54.42 REMARK 500 1 ASP A 376 46.45 -108.59 REMARK 500 1 ALA A 383 75.32 -112.34 REMARK 500 1 PRO A 385 -29.94 -31.73 REMARK 500 2 MET A 245 32.36 39.44 REMARK 500 2 ALA A 251 -22.90 -174.74 REMARK 500 2 ALA A 253 81.77 179.72 REMARK 500 2 ALA A 257 -23.57 -149.83 REMARK 500 2 PHE A 278 -57.27 -122.88 REMARK 500 2 ALA A 289 -126.51 -49.18 REMARK 500 2 PRO A 302 -0.09 -53.91 REMARK 500 2 GLN A 331 28.29 36.97 REMARK 500 2 R1A A 332 -148.73 -59.38 REMARK 500 2 PRO A 334 143.86 -37.36 REMARK 500 2 PHE A 361 62.44 35.37 REMARK 500 2 LEU A 364 -118.43 -74.06 REMARK 500 2 ASP A 365 -161.12 77.22 REMARK 500 3 ALA A 253 70.39 49.36 REMARK 500 3 ALA A 260 113.34 57.06 REMARK 500 3 GLN A 270 -108.65 -78.63 REMARK 500 3 ALA A 289 -179.39 -49.77 REMARK 500 3 SER A 299 104.41 -51.84 REMARK 500 3 PRO A 302 -0.48 -52.62 REMARK 500 3 GLN A 331 29.82 48.09 REMARK 500 3 R1A A 332 -149.54 -161.49 REMARK 500 3 VAL A 333 98.67 56.66 REMARK 500 3 LEU A 364 -123.27 42.75 REMARK 500 3 ASP A 365 -143.83 85.89 REMARK 500 3 R1A A 371 -8.10 -53.46 REMARK 500 4 MET A 245 -72.35 57.75 REMARK 500 4 ALA A 253 172.55 -46.67 REMARK 500 4 ALA A 260 -108.20 33.41 REMARK 500 4 GLU A 266 101.18 51.14 REMARK 500 4 SER A 269 78.91 -156.25 REMARK 500 4 GLN A 270 -90.21 43.10 REMARK 500 4 ALA A 279 -15.52 -44.00 REMARK 500 4 ALA A 289 179.49 -50.12 REMARK 500 REMARK 500 THIS ENTRY HAS 145 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11546 RELATED DB: BMRB DBREF 2RUJ A 247 400 UNP Q9P7Y9 SIN1_SCHPO 247 400 SEQADV 2RUJ GLY A 241 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RUJ PRO A 242 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RUJ GLY A 243 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RUJ HIS A 244 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RUJ MET A 245 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RUJ GLY A 246 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RUJ R1A A 280 UNP Q9P7Y9 THR 280 ENGINEERED MUTATION SEQADV 2RUJ R1A A 282 UNP Q9P7Y9 SER 282 ENGINEERED MUTATION SEQADV 2RUJ R1A A 291 UNP Q9P7Y9 ARG 291 ENGINEERED MUTATION SEQADV 2RUJ R1A A 301 UNP Q9P7Y9 SER 301 ENGINEERED MUTATION SEQADV 2RUJ R1A A 312 UNP Q9P7Y9 LYS 312 ENGINEERED MUTATION SEQADV 2RUJ R1A A 332 UNP Q9P7Y9 LEU 332 ENGINEERED MUTATION SEQADV 2RUJ R1A A 371 UNP Q9P7Y9 SER 371 ENGINEERED MUTATION SEQADV 2RUJ R1A A 384 UNP Q9P7Y9 THR 384 ENGINEERED MUTATION SEQADV 2RUJ R1A A 394 UNP Q9P7Y9 ALA 394 ENGINEERED MUTATION SEQRES 1 A 160 GLY PRO GLY HIS MET GLY SER VAL SER ASN ALA LYS ALA SEQRES 2 A 160 PRO THR SER ALA LEU ARG ALA LEU LEU GLU HIS LYS GLU SEQRES 3 A 160 ASN SER SER GLN ASN GLY PRO LEU ALA GLU ASN PHE ALA SEQRES 4 A 160 R1A PHE R1A GLY HIS ALA GLU SER ASN ALA LEU R1A LEU SEQRES 5 A 160 ASN ILE TYR PHE PRO SER SER GLU R1A PRO SER LYS PRO SEQRES 6 A 160 LEU PHE VAL GLU LEU ARG R1A ASN VAL LEU VAL SER GLU SEQRES 7 A 160 ALA ILE GLY TYR ILE LEU LEU GLN TYR VAL ASN GLN GLN SEQRES 8 A 160 R1A VAL PRO PRO ILE GLU ASP GLU ALA GLN ASN PRO ASN SEQRES 9 A 160 TYR TRP ASN LEU ARG ILE VAL GLU ASP ASP GLY GLU LEU SEQRES 10 A 160 ASP GLU ASP PHE PRO ALA LEU ASP ARG VAL GLY PRO LEU SEQRES 11 A 160 R1A LYS PHE GLY PHE ASP ALA PHE ALA LEU VAL LYS ALA SEQRES 12 A 160 R1A PRO ALA GLN ILE LYS GLU ASN GLN ALA R1A TYR PRO SEQRES 13 A 160 PHE LYS SER LYS MODRES 2RUJ R1A A 280 CYS MODRES 2RUJ R1A A 282 CYS MODRES 2RUJ R1A A 291 CYS MODRES 2RUJ R1A A 301 CYS MODRES 2RUJ R1A A 312 CYS MODRES 2RUJ R1A A 332 CYS MODRES 2RUJ R1A A 371 CYS MODRES 2RUJ R1A A 384 CYS MODRES 2RUJ R1A A 394 CYS HET R1A A 280 37 HET R1A A 282 37 HET R1A A 291 37 HET R1A A 301 37 HET R1A A 312 37 HET R1A A 332 37 HET R1A A 371 37 HET R1A A 384 37 HET R1A A 394 37 HETNAM R1A 3-{[(2,2,5,5-TETRAMETHYL-1-OXO-2,5-DIHYDRO-1H- HETNAM 2 R1A PYRROLIUM-3-YL)METHYL]DISULFANYL}-D-ALANINE HETSYN R1A S-(THIOMETHYL-3-[2,2,5,5-TETRAMETHYL PYRROLINE-1-OXYL]) HETSYN 2 R1A CYSTEINE FORMUL 1 R1A 9(C12 H21 N2 O3 S2 1+) HELIX 1 1 PHE A 278 R1A A 282 5 5 HELIX 2 2 VAL A 316 GLN A 331 1 16 HELIX 3 3 GLU A 337 GLN A 341 5 5 HELIX 4 4 LEU A 370 GLY A 374 5 5 HELIX 5 5 R1A A 384 TYR A 395 1 12 SHEET 1 A 2 LEU A 290 LEU A 292 0 SHEET 2 A 2 VAL A 308 LEU A 310 -1 O LEU A 310 N LEU A 290 SHEET 1 B 4 ILE A 294 TYR A 295 0 SHEET 2 B 4 PHE A 378 LYS A 382 1 O PHE A 378 N TYR A 295 SHEET 3 B 4 TRP A 346 VAL A 351 -1 N ARG A 349 O ALA A 379 SHEET 4 B 4 LEU A 357 ALA A 363 -1 O ALA A 363 N LEU A 348 LINK C ALA A 279 N R1A A 280 1555 1555 1.33 LINK C R1A A 280 N PHE A 281 1555 1555 1.34 LINK C PHE A 281 N R1A A 282 1555 1555 1.33 LINK C R1A A 282 N GLY A 283 1555 1555 1.33 LINK C LEU A 290 N R1A A 291 1555 1555 1.33 LINK C R1A A 291 N LEU A 292 1555 1555 1.33 LINK C GLU A 300 N R1A A 301 1555 1555 1.33 LINK C R1A A 301 N PRO A 302 1555 1555 1.31 LINK C ARG A 311 N R1A A 312 1555 1555 1.33 LINK C R1A A 312 N ASN A 313 1555 1555 1.34 LINK C GLN A 331 N R1A A 332 1555 1555 1.33 LINK C R1A A 332 N VAL A 333 1555 1555 1.33 LINK C LEU A 370 N R1A A 371 1555 1555 1.33 LINK C R1A A 371 N LYS A 372 1555 1555 1.33 LINK C ALA A 383 N R1A A 384 1555 1555 1.33 LINK C R1A A 384 N PRO A 385 1555 1555 1.31 LINK C ALA A 393 N R1A A 394 1555 1555 1.33 LINK C R1A A 394 N TYR A 395 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1