HEADER TRANSCRIPTION 24-SEP-14 2RUK TITLE SOLUTION STRUCTURE OF THE COMPLEX BETWEEN P53 TRANSACTIVATION DOMAIN 2 TITLE 2 AND TFIIH P62 PH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P53 TRANSACTIVATION DOMAIN, UNP RESIDUES 41-62; COMPND 5 SYNONYM: TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: TFIIH P62 PH DOMAIN, UNP RESIDUES 1-108; COMPND 11 SYNONYM: BASIC TRANSCRIPTION FACTOR 2 62 KDA SUBUNIT, BTF2 P62, COMPND 12 GENERAL TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1, TFIIH BASAL COMPND 13 TRANSCRIPTION FACTOR COMPLEX P62 SUBUNIT; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BTF2, GTF2H1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTITUMOR PROTEIN, GENERAL TRANSCRIPTION FACTOR, PH DOMAIN, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.OKUDA,Y.NISHIMURA REVDAT 2 24-AUG-22 2RUK 1 JRNL REMARK SEQADV LINK REVDAT 1 15-OCT-14 2RUK 0 JRNL AUTH M.OKUDA,Y.NISHIMURA JRNL TITL EXTENDED STRING BINDING MODE OF THE PHOSPHORYLATED JRNL TITL 2 TRANSACTIVATION DOMAIN OF TUMOR SUPPRESSOR P53. JRNL REF J.AM.CHEM.SOC. V. 136 14143 2014 JRNL REFN ESSN 1520-5126 JRNL PMID 25216154 JRNL DOI 10.1021/JA506351F REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRDRAW, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRDRAW), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RUK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000150284. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-99% 13C; U-99% 15N] REMARK 210 TFIIH P62 PH DOMAIN-1, 0.48 MM REMARK 210 P53 TAD2-2, 20 MM POTASSIUM REMARK 210 PHOSPHATE-3, 5 MM [U-2H] DTT-4, REMARK 210 90% H2O/10% D2O; 0.4 MM [U-99% REMARK 210 13C; U-99% 15N] TFIIH P62 PH REMARK 210 DOMAIN-5, 0.48 MM P53 TAD2-6, 20 REMARK 210 MM POTASSIUM PHOSPHATE-7, 5 MM REMARK 210 [U-2H] DTT-8, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D HNHB; 2D REMARK 210 1H-1H TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, X-PLOR NIH, MOLMOL, REMARK 210 PROCHECKNMR REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 ASP A 49 HZ3 LYS B 62 1.34 REMARK 500 HZ1 LYS B 93 OD1 ASP B 94 1.54 REMARK 500 HZ2 LYS B 106 OXT ASN B 108 1.55 REMARK 500 O1P SEP A 46 HZ1 LYS B 19 1.57 REMARK 500 OE1 GLU A 51 HZ1 LYS B 54 1.58 REMARK 500 OD1 ASP A 61 HZ1 LYS B 51 1.58 REMARK 500 O PRO A 60 HZ1 LYS B 104 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 43 -159.02 -118.40 REMARK 500 1 PRO A 47 28.45 -69.61 REMARK 500 1 ASP A 49 70.99 -177.88 REMARK 500 1 GLU A 51 46.86 156.02 REMARK 500 1 TPO A 55 71.58 16.21 REMARK 500 1 ALA B 2 -65.23 72.72 REMARK 500 1 LYS B 18 42.72 72.91 REMARK 500 1 ARG B 105 88.91 -177.86 REMARK 500 1 LYS B 106 15.30 -163.17 REMARK 500 2 GLU A 51 26.67 -150.21 REMARK 500 2 TPO A 55 79.51 -63.75 REMARK 500 2 SER B 5 82.85 -153.75 REMARK 500 2 LYS B 18 54.14 73.60 REMARK 500 2 SER B 80 30.68 -96.52 REMARK 500 2 ARG B 105 82.39 -169.61 REMARK 500 3 ASP A 42 -76.67 65.03 REMARK 500 3 MET A 44 109.22 -173.29 REMARK 500 3 LEU A 45 -148.89 -86.74 REMARK 500 3 PRO A 47 32.40 -88.89 REMARK 500 3 ILE A 50 105.32 -164.77 REMARK 500 3 GLU A 51 29.69 -157.47 REMARK 500 3 TPO A 55 70.22 20.39 REMARK 500 3 PRO A 60 46.18 -100.26 REMARK 500 3 TYR B 47 -9.98 -59.90 REMARK 500 3 SER B 80 42.68 -82.73 REMARK 500 3 LYS B 106 -163.46 -79.15 REMARK 500 4 ASP A 42 -154.84 58.50 REMARK 500 4 LEU A 43 -70.92 -73.03 REMARK 500 4 MET A 44 66.90 61.69 REMARK 500 4 SEP A 46 -73.36 93.00 REMARK 500 4 PRO A 47 25.25 -77.96 REMARK 500 4 GLU A 51 43.79 160.84 REMARK 500 4 TPO A 55 69.40 12.53 REMARK 500 4 ASP A 61 -46.00 79.42 REMARK 500 4 SER B 4 98.96 -66.00 REMARK 500 5 ASP A 42 -144.42 -167.91 REMARK 500 5 LEU A 43 37.21 -86.64 REMARK 500 5 PRO A 47 30.53 -75.79 REMARK 500 5 ASP A 49 72.11 -155.45 REMARK 500 5 ILE A 50 112.22 -167.56 REMARK 500 5 GLU A 51 31.02 -169.86 REMARK 500 5 TPO A 55 74.59 -65.17 REMARK 500 5 PRO A 60 39.70 -97.60 REMARK 500 5 SER B 4 -96.59 65.33 REMARK 500 5 GLU B 6 40.72 -82.58 REMARK 500 5 ARG B 105 108.48 61.15 REMARK 500 5 LYS B 106 -84.58 -141.21 REMARK 500 6 PRO A 47 36.99 -73.88 REMARK 500 6 ILE A 50 116.31 -164.77 REMARK 500 6 GLU A 51 37.36 176.73 REMARK 500 REMARK 500 THIS ENTRY HAS 211 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11578 RELATED DB: BMRB DBREF 2RUK A 41 62 UNP P04637 P53_HUMAN 41 62 DBREF 2RUK B 1 108 UNP P32780 TF2H1_HUMAN 1 108 SEQADV 2RUK GLY B -1 UNP P32780 EXPRESSION TAG SEQADV 2RUK SER B 0 UNP P32780 EXPRESSION TAG SEQRES 1 A 22 ASP ASP LEU MET LEU SEP PRO ASP ASP ILE GLU GLN TRP SEQRES 2 A 22 PHE TPO GLU ASP PRO GLY PRO ASP GLU SEQRES 1 B 110 GLY SER MET ALA THR SER SER GLU GLU VAL LEU LEU ILE SEQRES 2 B 110 VAL LYS LYS VAL ARG GLN LYS LYS GLN ASP GLY ALA LEU SEQRES 3 B 110 TYR LEU MET ALA GLU ARG ILE ALA TRP ALA PRO GLU GLY SEQRES 4 B 110 LYS ASP ARG PHE THR ILE SER HIS MET TYR ALA ASP ILE SEQRES 5 B 110 LYS CYS GLN LYS ILE SER PRO GLU GLY LYS ALA LYS ILE SEQRES 6 B 110 GLN LEU GLN LEU VAL LEU HIS ALA GLY ASP THR THR ASN SEQRES 7 B 110 PHE HIS PHE SER ASN GLU SER THR ALA VAL LYS GLU ARG SEQRES 8 B 110 ASP ALA VAL LYS ASP LEU LEU GLN GLN LEU LEU PRO LYS SEQRES 9 B 110 PHE LYS ARG LYS ALA ASN MODRES 2RUK SEP A 46 SER PHOSPHOSERINE MODRES 2RUK TPO A 55 THR PHOSPHOTHREONINE HET SEP A 46 14 HET TPO A 55 17 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 1 TPO C4 H10 N O6 P HELIX 1 1 TYR B 47 ASP B 49 5 3 HELIX 2 2 THR B 84 LYS B 104 1 21 SHEET 1 A 7 THR B 42 MET B 46 0 SHEET 2 A 7 ARG B 30 ALA B 34 -1 N ILE B 31 O HIS B 45 SHEET 3 A 7 ASP B 21 MET B 27 -1 N ALA B 23 O ALA B 34 SHEET 4 A 7 LEU B 9 ARG B 16 -1 N VAL B 12 O LEU B 24 SHEET 5 A 7 ASP B 73 PHE B 79 -1 O HIS B 78 N ARG B 16 SHEET 6 A 7 ILE B 63 LEU B 69 -1 N LEU B 65 O PHE B 77 SHEET 7 A 7 ILE B 50 SER B 56 -1 N CYS B 52 O VAL B 68 LINK C LEU A 45 N SEP A 46 1555 1555 1.33 LINK C SEP A 46 N PRO A 47 1555 1555 1.36 LINK C PHE A 54 N TPO A 55 1555 1555 1.33 LINK C TPO A 55 N GLU A 56 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1