HEADER CELL CYCLE 10-DEC-15 2RVK TITLE REFINED SOLUTION STRUCTURE OF SCHIZOSACCHAROMYCES POMBE SIN1 CRIM TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRESS-ACTIVATED MAP KINASE-INTERACTING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 247-400; COMPND 5 SYNONYM: SAPK-INTERACTING PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE 972H-; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: SIN1, SPAPYUG7.02C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PCOLD-GST KEYWDS SIN1, CRIM DOMAIN, TORC2, PARAMAGNETIC RELAXATION ENHANCEMENT, CELL KEYWDS 2 CYCLE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.FURUITA,S.KATAOKA,K.SHIOZAKI,C.KOJIMA REVDAT 3 14-JUN-23 2RVK 1 REMARK SEQADV REVDAT 2 15-NOV-17 2RVK 1 JRNL REVDAT 1 25-JAN-17 2RVK 0 JRNL AUTH H.TATEBE,S.MURAYAMA,T.YONEKURA,T.HATANO,D.RICHTER,T.FURUYA, JRNL AUTH 2 S.KATAOKA,K.FURUITA,C.KOJIMA,K.SHIOZAKI JRNL TITL SUBSTRATE SPECIFICITY OF TOR COMPLEX 2 IS DETERMINED BY A JRNL TITL 2 UBIQUITIN-FOLD DOMAIN OF THE SIN1 SUBUNIT. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28264193 JRNL DOI 10.7554/ELIFE.19594 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.95, X-PLOR NIH 2.31 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000150318. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 15N] SIN1CRIM-1, REMARK 210 50 MM POTASSIUM PHOSPHATE-2, 50 REMARK 210 MM POTASSIUM CHLORIDE-3, 90 % REMARK 210 H2O-4, 10 % D2O-5, 1 MM DTT-6, REMARK 210 90% H2O/10% D2O; 0.5 MM [U-100% REMARK 210 13C; U-100% 15N] SIN1CRIM-7, 50 REMARK 210 MM POTASSIUM PHOSPHATE-8, 50 MM REMARK 210 POTASSIUM CHLORIDE-9, 1 MM DTT- REMARK 210 10, 90 % H2O-11, 10 % D2O-12, 90% REMARK 210 H2O/10% D2O; 0.5 MM SIN1CRIM-13, REMARK 210 50 MM POTASSIUM PHOSPHATE-14, REMARK 210 50 MM POTASSIUM CHLORIDE-15, 90 % REMARK 210 H2O-16, 10 % D2O-17, 1 MM DTT- REMARK 210 18, 90% H2O/10% D2O; 0.5 MM [U- REMARK 210 100% 15N] SIN1CRIM-19, 50 MM REMARK 210 POTASSIUM PHOSPHATE-20, 50 MM REMARK 210 POTASSIUM CHLORIDE-21, 90 % H2O- REMARK 210 22, 10 % D2O-23, 1 MM DTT-24, 15 REMARK 210 MG/ML PF1 PHAGE-25, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 HN(COCA)CB; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 248 80.78 38.57 REMARK 500 1 ALA A 253 78.33 -174.40 REMARK 500 1 LEU A 262 84.86 34.18 REMARK 500 1 GLU A 266 79.56 -161.90 REMARK 500 1 SER A 317 -33.79 -39.86 REMARK 500 1 ASP A 365 -152.99 -158.51 REMARK 500 2 ALA A 253 77.47 58.79 REMARK 500 2 ALA A 257 43.98 -165.50 REMARK 500 2 ALA A 260 -22.74 -160.17 REMARK 500 2 GLN A 331 27.26 44.81 REMARK 500 2 LEU A 332 -153.50 -126.19 REMARK 500 2 VAL A 333 122.85 57.94 REMARK 500 2 PRO A 334 154.73 -40.46 REMARK 500 2 ASP A 365 -162.76 -174.01 REMARK 500 2 THR A 384 172.31 -57.81 REMARK 500 3 HIS A 244 74.99 50.12 REMARK 500 3 THR A 255 53.82 -98.57 REMARK 500 3 ALA A 260 96.49 -170.64 REMARK 500 3 SER A 301 76.09 -109.75 REMARK 500 3 GLN A 331 11.72 49.93 REMARK 500 3 LEU A 332 -162.15 -103.92 REMARK 500 3 VAL A 333 133.41 61.33 REMARK 500 3 PRO A 343 -15.60 -44.31 REMARK 500 4 ALA A 257 -5.00 -157.81 REMARK 500 4 ALA A 260 51.23 -164.17 REMARK 500 4 HIS A 264 130.77 57.93 REMARK 500 4 GLU A 266 153.44 -46.97 REMARK 500 4 SER A 268 89.65 76.03 REMARK 500 4 GLN A 270 -32.55 -156.00 REMARK 500 4 GLN A 331 54.42 38.63 REMARK 500 4 PRO A 343 -9.98 -47.36 REMARK 500 5 ALA A 253 75.40 47.32 REMARK 500 5 GLN A 331 11.82 52.81 REMARK 500 5 VAL A 333 128.77 66.11 REMARK 500 5 PRO A 334 154.90 -38.74 REMARK 500 5 PHE A 361 58.68 38.17 REMARK 500 5 ASP A 365 -170.80 -171.35 REMARK 500 6 ALA A 251 170.38 56.95 REMARK 500 6 SER A 256 23.88 81.81 REMARK 500 6 LEU A 261 -60.60 -120.14 REMARK 500 6 TYR A 295 85.82 -150.59 REMARK 500 6 SER A 317 -29.45 -39.80 REMARK 500 6 GLN A 331 11.58 52.75 REMARK 500 6 VAL A 333 111.65 58.78 REMARK 500 6 PRO A 334 165.98 -40.59 REMARK 500 6 ASP A 365 -153.79 -163.19 REMARK 500 7 SER A 247 -169.52 45.41 REMARK 500 7 ASN A 250 -81.64 -148.13 REMARK 500 7 ALA A 257 35.69 -74.78 REMARK 500 7 ALA A 260 53.76 -105.41 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RUJ RELATED DB: PDB REMARK 900 RELATED ID: 11546 RELATED DB: BMRB DBREF 2RVK A 247 400 UNP Q9P7Y9 SIN1_SCHPO 247 400 SEQADV 2RVK GLY A 241 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RVK PRO A 242 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RVK GLY A 243 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RVK HIS A 244 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RVK MET A 245 UNP Q9P7Y9 EXPRESSION TAG SEQADV 2RVK GLY A 246 UNP Q9P7Y9 EXPRESSION TAG SEQRES 1 A 160 GLY PRO GLY HIS MET GLY SER VAL SER ASN ALA LYS ALA SEQRES 2 A 160 PRO THR SER ALA LEU ARG ALA LEU LEU GLU HIS LYS GLU SEQRES 3 A 160 ASN SER SER GLN ASN GLY PRO LEU ALA GLU ASN PHE ALA SEQRES 4 A 160 THR PHE SER GLY HIS ALA GLU SER ASN ALA LEU ARG LEU SEQRES 5 A 160 ASN ILE TYR PHE PRO SER SER GLU SER PRO SER LYS PRO SEQRES 6 A 160 LEU PHE VAL GLU LEU ARG LYS ASN VAL LEU VAL SER GLU SEQRES 7 A 160 ALA ILE GLY TYR ILE LEU LEU GLN TYR VAL ASN GLN GLN SEQRES 8 A 160 LEU VAL PRO PRO ILE GLU ASP GLU ALA GLN ASN PRO ASN SEQRES 9 A 160 TYR TRP ASN LEU ARG ILE VAL GLU ASP ASP GLY GLU LEU SEQRES 10 A 160 ASP GLU ASP PHE PRO ALA LEU ASP ARG VAL GLY PRO LEU SEQRES 11 A 160 SER LYS PHE GLY PHE ASP ALA PHE ALA LEU VAL LYS ALA SEQRES 12 A 160 THR PRO ALA GLN ILE LYS GLU ASN GLN ALA ALA TYR PRO SEQRES 13 A 160 PHE LYS SER LYS HELIX 1 1 GLY A 272 ALA A 279 1 8 HELIX 2 2 THR A 280 SER A 282 5 3 HELIX 3 3 VAL A 316 TYR A 322 1 7 HELIX 4 4 TYR A 322 GLN A 331 1 10 HELIX 5 5 ASP A 338 ASN A 342 5 5 HELIX 6 6 PRO A 369 GLY A 374 1 6 HELIX 7 7 THR A 384 TYR A 395 1 12 SHEET 1 A 5 VAL A 308 LEU A 310 0 SHEET 2 A 5 LEU A 290 ILE A 294 -1 N LEU A 290 O LEU A 310 SHEET 3 A 5 ALA A 377 VAL A 381 1 O PHE A 378 N ASN A 293 SHEET 4 A 5 ASN A 347 ARG A 349 -1 N ASN A 347 O VAL A 381 SHEET 5 A 5 ALA A 363 LEU A 364 -1 O LEU A 364 N LEU A 348 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1