data_2SNS # _entry.id 2SNS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2SNS WWPDB D_1000178637 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 1982-07-29 _pdbx_database_PDB_obs_spr.pdb_id 2SNS _pdbx_database_PDB_obs_spr.replace_pdb_id 1SNS _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2SNS _pdbx_database_status.recvd_initial_deposition_date 1982-05-14 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Legg, M.J.' 1 'Cotton, F.A.' 2 'Hazen Jr., E.E.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI 1 ;Staphylococcal nuclease: proposed mechanism of action based on structure of enzyme-thymidine 3',5'-bisphosphate-calcium ion complex at 1.5-A resolution. ; Proc.Natl.Acad.Sci.USA 76 2551 2555 1979 PNASA6 US 0027-8424 0040 ? 288045 10.1073/pnas.76.6.2551 3 ;The Nucleotide Binding Site of Staphylococcal Nuclease and a New Approach to the Refinement of the Crystal Structures of Biological Macromolecules ; ;STRUCTURE AND CONFORMATION OF NUCLEIC ACIDS AND PROTEIN-NUCLEIC ACID INTERACTIONS : PROCEEDINGS OF THE FOURTH ANNUAL HARRY STEENBOCK SYMPOSIUM, JUNE 16-19, 1974, MADISON, WISCONSIN ; ? 317 ? 1975 32VBAT US 0-8391-0764-1 0992 'University Park Press,Baltimore,Md.' ? ? 4 ;Structure of Bis (Methylguanidinium) Monohydrogen Orthophosphate,A Model for the Arginine-Phosphate Interactions at the Active Site of Staphylococcal Nuclease and Other Phosphohydrolytic Enzymes ; J.Am.Chem.Soc. 96 4471 ? 1974 JACSAT US 0002-7863 0004 ? ? ? 5 'Some Aspects of the Structure of Staphylococcal Nuclease,Part I,Crystallographic Studies' 'Cold Spring Harbor Symp.Quant.Biol.' 36 243 ? 1972 CSHSAZ US 0091-7451 0421 ? ? ? 6 'Some Aspects of the Structure of Staphylococcal Nuclease,Part II,Studies in Solution' 'Cold Spring Harbor Symp.Quant.Biol.' 36 249 ? 1972 CSHSAZ US 0091-7451 0421 ? ? ? 7 ;A High Resolution Structure of an Inhibitor Complex of the Extracellular Nuclease of Staphylococcus Aureus,I.Experimental Procedures and Chain Tracing ; J.Biol.Chem. 246 2302 ? 1971 JBCHA3 US 0021-9258 0071 ? ? ? 8 'Staphylococcal Nuclease X-Ray Structure' 'The Enzymes,Third Edition' 4 153 ? 1971 ? ? 0-12-122711-1 0436 'Academic Press,New York' ? ? primary ? 'Thesis, Texas Agricultural and Mechanical University' ? ? ? 1977 ? US 0531-5131 0932 ? -1 ? 2 ? 'Thesis, Texas Agricultural and Mechanical University' ? ? ? 1976 ? US 0531-5131 0932 ? ? ? 9 ? 'Atlas of Protein Sequence and Structure (Data Section)' 5 132 ? 1972 ? ? 0-912466-02-2 0435 'National Biomedical Research Foundation, Silver Spring,Md.' ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cotton, F.A.' 1 primary 'Hazen Jr., E.E.' 2 primary 'Legg, M.J.' 3 1 'Cotton, F.A.' 4 1 'Hazenjunior, E.E.' 5 1 'Legg, M.J.' 6 2 'Stanislowski, A.G.' 7 3 'Collins, D.M.' 8 3 'Cotton, F.A.' 9 3 'Hazenjunior, E.E.' 10 3 'Legg, M.J.' 11 4 'Cotton, F.A.' 12 4 'Day, V.W.' 13 4 'Hazenjunior, E.E.' 14 4 'Larsen, S.' 15 4 'Wong, S.T.K.' 16 5 'Cotton, F.A.' 17 5 'Bier, C.J.' 18 5 'Day, V.W.' 19 5 'Hazenjunior, E.E.' 20 5 'Larsen, S.' 21 6 'Anfinsen, C.B.' 22 6 'Schechter, A.N.' 23 6 'Taniuchi, H.' 24 7 'Arnone, A.' 25 7 'Bier, C.J.' 26 7 'Cotton, F.A.' 27 7 'Day, V.W.' 28 7 'Hazenjunior, E.E.' 29 7 'Richardson, D.C.' 30 7 'Richardson, J.S.' 31 7 'Yonath, A.' 32 8 'Cotton, F.A.' 33 8 'Hazenjunior, E.E.' 34 # loop_ _citation_editor.citation_id _citation_editor.name _citation_editor.ordinal 3 'Sundaralingam, M.' 1 3 'Rao, S.T.' 2 8 'Boyer, P.D.' 3 9 'Dayhoff, M.O.' 4 # _cell.entry_id 2SNS _cell.length_a 48.190 _cell.length_b 48.190 _cell.length_c 63.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2SNS _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'THERMONUCLEASE PRECURSOR' 16842.346 1 3.1.31.1 ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn "THYMIDINE-3',5'-DIPHOSPHATE" 402.188 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFNKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWSENDADSGQ ; _entity_poly.pdbx_seq_one_letter_code_can ;ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFNKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWSENDADSGQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 THR n 1 3 SER n 1 4 THR n 1 5 LYS n 1 6 LYS n 1 7 LEU n 1 8 HIS n 1 9 LYS n 1 10 GLU n 1 11 PRO n 1 12 ALA n 1 13 THR n 1 14 LEU n 1 15 ILE n 1 16 LYS n 1 17 ALA n 1 18 ILE n 1 19 ASP n 1 20 GLY n 1 21 ASP n 1 22 THR n 1 23 VAL n 1 24 LYS n 1 25 LEU n 1 26 MET n 1 27 TYR n 1 28 LYS n 1 29 GLY n 1 30 GLN n 1 31 PRO n 1 32 MET n 1 33 THR n 1 34 PHE n 1 35 ARG n 1 36 LEU n 1 37 LEU n 1 38 LEU n 1 39 VAL n 1 40 ASP n 1 41 THR n 1 42 PRO n 1 43 GLU n 1 44 THR n 1 45 LYS n 1 46 HIS n 1 47 PRO n 1 48 LYS n 1 49 LYS n 1 50 GLY n 1 51 VAL n 1 52 GLU n 1 53 LYS n 1 54 TYR n 1 55 GLY n 1 56 PRO n 1 57 GLU n 1 58 ALA n 1 59 SER n 1 60 ALA n 1 61 PHE n 1 62 THR n 1 63 LYS n 1 64 LYS n 1 65 MET n 1 66 VAL n 1 67 GLU n 1 68 ASN n 1 69 ALA n 1 70 LYS n 1 71 LYS n 1 72 ILE n 1 73 GLU n 1 74 VAL n 1 75 GLU n 1 76 PHE n 1 77 ASN n 1 78 LYS n 1 79 GLY n 1 80 GLN n 1 81 ARG n 1 82 THR n 1 83 ASP n 1 84 LYS n 1 85 TYR n 1 86 GLY n 1 87 ARG n 1 88 GLY n 1 89 LEU n 1 90 ALA n 1 91 TYR n 1 92 ILE n 1 93 TYR n 1 94 ALA n 1 95 ASP n 1 96 GLY n 1 97 LYS n 1 98 MET n 1 99 VAL n 1 100 ASN n 1 101 GLU n 1 102 ALA n 1 103 LEU n 1 104 VAL n 1 105 ARG n 1 106 GLN n 1 107 GLY n 1 108 LEU n 1 109 ALA n 1 110 LYS n 1 111 VAL n 1 112 ALA n 1 113 TYR n 1 114 VAL n 1 115 TYR n 1 116 LYS n 1 117 PRO n 1 118 ASN n 1 119 ASN n 1 120 THR n 1 121 HIS n 1 122 GLU n 1 123 GLN n 1 124 HIS n 1 125 LEU n 1 126 ARG n 1 127 LYS n 1 128 SER n 1 129 GLU n 1 130 ALA n 1 131 GLN n 1 132 ALA n 1 133 LYS n 1 134 LYS n 1 135 GLU n 1 136 LYS n 1 137 LEU n 1 138 ASN n 1 139 ILE n 1 140 TRP n 1 141 SER n 1 142 GLU n 1 143 ASN n 1 144 ASP n 1 145 ALA n 1 146 ASP n 1 147 SER n 1 148 GLY n 1 149 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NUC_STAAU _struct_ref.pdbx_db_accession P00644 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 83 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2SNS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 149 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00644 _struct_ref_seq.db_align_beg 83 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 231 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2SNS ASN A 77 ? UNP P00644 ASP 159 CONFLICT 77 1 1 2SNS ASN A 143 ? UNP P00644 ASP 225 CONFLICT 143 2 1 2SNS ASP A 144 ? UNP P00644 ASN 226 CONFLICT 144 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THP 'DNA linking' . "THYMIDINE-3',5'-DIPHOSPHATE" ? 'C10 H16 N2 O11 P2' 402.188 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2SNS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 2SNS _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.5 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THE ELECTRON DENSITY MAP DID NOT DISTINCTLY REVEAL THE LOCATION OF THE FIRST FIVE OR THE LAST EIGHT AMINO ACID RESIDUES (I.E. 1-5 AND 142-149). THE FIRST FIVE RESIDUES COULD BE FITTED TO THE WEAK DENSITY IN SEVERAL DIFFERENT CONFORMATIONS, BUT THERE WAS INSUFFICIENT DENSITY NEAR THE CARBOXY TERMINUS TO PERMIT ANY ATTEMPTS AT FITTING. ATOMIC COORDINATES FOR ALL FITTED ATOMS APPEAR IN THIS ENTRY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1125 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1151 _refine_hist.d_res_high 1.5 _refine_hist.d_res_low . # _struct.entry_id 2SNS _struct.title ;STAPHYLOCOCCAL NUCLEASE. PROPOSED MECHANISM OF ACTION BASED ON STRUCTURE OF ENZYME-THYMIDINE 3(PRIME),5(PRIME)-BIPHOSPHATE-CALCIUM ION COMPLEX AT 1.5-ANGSTROMS RESOLUTION ; _struct.pdbx_descriptor 'STAPHYLOCOCCAL NUCLEASE (E.C.3.1.33.1) COMPLEX WITH 2(PRIME)-DEOXY-3(PRIME)-5(PRIME)-DIPHOSPHOTHYMIDINE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2SNS _struct_keywords.pdbx_keywords 'HYDROLASE (PHOSPHORIC DIESTER)' _struct_keywords.text 'HYDROLASE (PHOSPHORIC DIESTER)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 GLY A 55 ? GLU A 67 ? GLY A 55 GLU A 67 1 ? 13 HELX_P HELX_P2 H2 VAL A 99 ? GLN A 106 ? VAL A 99 GLN A 106 1 ? 8 HELX_P HELX_P3 H3 GLU A 122 ? LYS A 134 ? GLU A 122 LYS A 134 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 35 NH2 ? ? ? 1_555 C THP . O6P ? ? A ARG 35 A THP 151 1_555 ? ? ? ? ? ? ? 1.947 ? metalc1 metalc ? ? B CA . CA ? ? ? 1_555 A ARG 35 NH2 ? ? A CA 150 A ARG 35 1_555 ? ? ? ? ? ? ? 3.380 ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 40 OD1 ? ? A CA 150 A ASP 40 1_555 ? ? ? ? ? ? ? 2.587 ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 A THR 41 O ? ? A CA 150 A THR 41 1_555 ? ? ? ? ? ? ? 2.865 ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 C THP . O6P ? ? A CA 150 A THP 151 1_555 ? ? ? ? ? ? ? 2.603 ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 21 OD1 ? ? A CA 150 A ASP 21 1_555 ? ? ? ? ? ? ? 2.367 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 116 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 116 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 117 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 117 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.67 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details B1 ? 3 ? B2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense B1 1 2 ? anti-parallel B1 2 3 ? anti-parallel B2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id B1 1 ALA A 12 ? ASP A 19 ? ALA A 12 ASP A 19 B1 2 ASP A 21 ? TYR A 27 ? ASP A 21 TYR A 27 B1 3 GLN A 30 ? LEU A 36 ? GLN A 30 LEU A 36 B2 1 LYS A 71 ? GLU A 75 ? LYS A 71 GLU A 75 B2 2 TYR A 91 ? ASP A 95 ? TYR A 91 ASP A 95 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id B1 1 2 O THR A 13 ? O THR A 13 N MET A 26 ? N MET A 26 B1 2 3 N VAL A 23 ? N VAL A 23 O PHE A 34 ? O PHE A 34 B2 1 2 N GLU A 73 ? N GLU A 73 O TYR A 93 ? O TYR A 93 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CAB Author ? ? ? ? 4 'IDENTIFIES THE FOUR RESIDUES WHICH SUPPLY OXYGEN ATOMS TO BIND THE CALCIUM ION' PO4 Author ? ? ? ? 3 'RESIDUES WHICH BIND THE INHIBITOR MOLECULE' AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CA A 150' AC2 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE THP A 151' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CAB 4 ASP A 21 ? ASP A 21 . ? 1_555 ? 2 CAB 4 ASP A 40 ? ASP A 40 . ? 1_555 ? 3 CAB 4 THR A 41 ? THR A 41 . ? 1_555 ? 4 CAB 4 THP C . ? THP A 151 . ? 1_555 ? 5 PO4 3 ARG A 35 ? ARG A 35 . ? 1_555 ? 6 PO4 3 ARG A 87 ? ARG A 87 . ? 1_555 ? 7 PO4 3 TYR A 85 ? TYR A 85 . ? 1_555 ? 8 AC1 5 ASP A 21 ? ASP A 21 . ? 1_555 ? 9 AC1 5 ARG A 35 ? ARG A 35 . ? 1_555 ? 10 AC1 5 ASP A 40 ? ASP A 40 . ? 1_555 ? 11 AC1 5 THR A 41 ? THR A 41 . ? 1_555 ? 12 AC1 5 THP C . ? THP A 151 . ? 1_555 ? 13 AC2 10 ASP A 21 ? ASP A 21 . ? 1_555 ? 14 AC2 10 ARG A 35 ? ARG A 35 . ? 1_555 ? 15 AC2 10 LEU A 37 ? LEU A 37 . ? 1_555 ? 16 AC2 10 ASP A 40 ? ASP A 40 . ? 1_555 ? 17 AC2 10 LYS A 71 ? LYS A 71 . ? 3_655 ? 18 AC2 10 TYR A 85 ? TYR A 85 . ? 1_555 ? 19 AC2 10 ARG A 87 ? ARG A 87 . ? 1_555 ? 20 AC2 10 LEU A 89 ? LEU A 89 . ? 1_555 ? 21 AC2 10 TYR A 115 ? TYR A 115 . ? 1_555 ? 22 AC2 10 CA B . ? CA A 150 . ? 1_555 ? # _database_PDB_matrix.entry_id 2SNS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2SNS _atom_sites.fract_transf_matrix[1][1] .020747 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] .020747 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] .015798 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'SEE REMARK 6.' # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 MET 32 32 32 MET MET A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 HIS 121 121 121 HIS HIS A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 TRP 140 140 140 TRP TRP A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 GLU 142 142 ? ? ? A . n A 1 143 ASN 143 143 ? ? ? A . n A 1 144 ASP 144 144 ? ? ? A . n A 1 145 ALA 145 145 ? ? ? A . n A 1 146 ASP 146 146 ? ? ? A . n A 1 147 SER 147 147 ? ? ? A . n A 1 148 GLY 148 148 ? ? ? A . n A 1 149 GLN 149 149 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 150 1 CA CA A . C 3 THP 1 151 2 THP PTP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NH2 ? A ARG 35 ? A ARG 35 ? 1_555 CA ? B CA . ? A CA 150 ? 1_555 OD1 ? A ASP 40 ? A ASP 40 ? 1_555 83.8 ? 2 NH2 ? A ARG 35 ? A ARG 35 ? 1_555 CA ? B CA . ? A CA 150 ? 1_555 O ? A THR 41 ? A THR 41 ? 1_555 136.0 ? 3 OD1 ? A ASP 40 ? A ASP 40 ? 1_555 CA ? B CA . ? A CA 150 ? 1_555 O ? A THR 41 ? A THR 41 ? 1_555 61.8 ? 4 NH2 ? A ARG 35 ? A ARG 35 ? 1_555 CA ? B CA . ? A CA 150 ? 1_555 O6P ? C THP . ? A THP 151 ? 1_555 35.0 ? 5 OD1 ? A ASP 40 ? A ASP 40 ? 1_555 CA ? B CA . ? A CA 150 ? 1_555 O6P ? C THP . ? A THP 151 ? 1_555 86.3 ? 6 O ? A THR 41 ? A THR 41 ? 1_555 CA ? B CA . ? A CA 150 ? 1_555 O6P ? C THP . ? A THP 151 ? 1_555 147.5 ? 7 NH2 ? A ARG 35 ? A ARG 35 ? 1_555 CA ? B CA . ? A CA 150 ? 1_555 OD1 ? A ASP 21 ? A ASP 21 ? 1_555 56.9 ? 8 OD1 ? A ASP 40 ? A ASP 40 ? 1_555 CA ? B CA . ? A CA 150 ? 1_555 OD1 ? A ASP 21 ? A ASP 21 ? 1_555 125.7 ? 9 O ? A THR 41 ? A THR 41 ? 1_555 CA ? B CA . ? A CA 150 ? 1_555 OD1 ? A ASP 21 ? A ASP 21 ? 1_555 121.6 ? 10 O6P ? C THP . ? A THP 151 ? 1_555 CA ? B CA . ? A CA 150 ? 1_555 OD1 ? A ASP 21 ? A ASP 21 ? 1_555 81.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1982-07-29 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-05-02 5 'Structure model' 1 4 2017-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Derived calculations' 5 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' pdbx_database_status 2 5 'Structure model' struct_conf 3 5 'Structure model' struct_conf_type # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 5 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_database_status.process_site' # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THERE ARE TWO BETA SHEETS WHICH FORM A DISTORTED VERSION OF A 5-STRANDED BETA BARREL. THE BARREL PATTERN IS -1,-1,+3, +1 IN THE NOTATION OF RICHARDSON. ; # _pdbx_entry_details.entry_id 2SNS _pdbx_entry_details.compound_details ;THE ENZYME IS INACTIVE IN THE PRESENCE OF A CALCIUM ION AND THE MOLECULE THYMIDINE 3(PRIME)-5(PRIME) DIPHOSPHATE. THE STRUCTURE REPORTED HERE IS THE STRUCTURE WITH CALCIUM ION AND INHIBITOR BOUND. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CB A GLU 43 ? ? OE1 A GLU 52 ? ? 1.36 2 1 O A GLU 135 ? ? CG A LYS 136 ? ? 1.49 3 1 N A GLY 79 ? ? OD1 A ASN 118 ? ? 1.52 4 1 CE2 A PHE 76 ? ? CD A ARG 81 ? ? 1.60 5 1 O A LYS 28 ? ? O A GLY 29 ? ? 1.80 6 1 OE2 A GLU 122 ? ? NH2 A ARG 126 ? ? 1.81 7 1 O A PRO 47 ? ? N A LYS 49 ? ? 1.83 8 1 O A TYR 115 ? ? ND2 A ASN 119 ? ? 1.86 9 1 O A LYS 64 ? ? N A GLU 67 ? ? 1.95 10 1 OE2 A GLU 122 ? ? NE A ARG 126 ? ? 1.95 11 1 O A ILE 139 ? ? N A SER 141 ? ? 1.96 12 1 O A THR 62 ? ? CG2 A VAL 66 ? ? 1.96 13 1 O A VAL 114 ? ? ND2 A ASN 119 ? ? 2.00 14 1 CA A GLY 79 ? ? OD1 A ASN 118 ? ? 2.03 15 1 CG2 A ILE 72 ? ? O A TYR 93 ? ? 2.04 16 1 O A ASN 138 ? ? CB A SER 141 ? ? 2.06 17 1 O A GLU 57 ? ? N A ALA 60 ? ? 2.09 18 1 O A VAL 114 ? ? CB A ASN 119 ? ? 2.09 19 1 O A LYS 64 ? ? N A VAL 66 ? ? 2.10 20 1 OE2 A GLU 122 ? ? CZ A ARG 126 ? ? 2.16 21 1 O A MET 98 ? ? N A ALA 102 ? ? 2.16 22 1 NZ A LYS 63 ? ? OE2 A GLU 67 ? ? 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 52 ? ? OE1 A GLU 52 ? ? 1.182 1.252 -0.070 0.011 N 2 1 CA A GLY 55 ? ? C A GLY 55 ? ? 1.417 1.514 -0.097 0.016 N 3 1 CD A GLU 75 ? ? OE1 A GLU 75 ? ? 1.186 1.252 -0.066 0.011 N 4 1 CA A PHE 76 ? ? CB A PHE 76 ? ? 1.312 1.535 -0.223 0.022 N 5 1 CA A GLN 123 ? ? CB A GLN 123 ? ? 1.688 1.535 0.153 0.022 N 6 1 NE1 A TRP 140 ? ? CE2 A TRP 140 ? ? 1.273 1.371 -0.098 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OE1 A GLU 10 ? ? CD A GLU 10 ? ? OE2 A GLU 10 ? ? 130.54 123.30 7.24 1.20 N 2 1 CB A ASP 19 ? ? CG A ASP 19 ? ? OD1 A ASP 19 ? ? 124.82 118.30 6.52 0.90 N 3 1 N A ASP 21 ? ? CA A ASP 21 ? ? CB A ASP 21 ? ? 99.74 110.60 -10.86 1.80 N 4 1 CB A ASP 21 ? ? CG A ASP 21 ? ? OD1 A ASP 21 ? ? 125.02 118.30 6.72 0.90 N 5 1 N A ASP 21 ? ? CA A ASP 21 ? ? C A ASP 21 ? ? 127.96 111.00 16.96 2.70 N 6 1 N A THR 22 ? ? CA A THR 22 ? ? CB A THR 22 ? ? 94.36 110.30 -15.94 1.90 N 7 1 N A VAL 23 ? ? CA A VAL 23 ? ? CB A VAL 23 ? ? 93.75 111.50 -17.75 2.20 N 8 1 N A PHE 34 ? ? CA A PHE 34 ? ? CB A PHE 34 ? ? 97.39 110.60 -13.21 1.80 N 9 1 N A LEU 38 ? ? CA A LEU 38 ? ? CB A LEU 38 ? ? 125.92 110.40 15.52 2.00 N 10 1 CB A ASP 40 ? ? CG A ASP 40 ? ? OD1 A ASP 40 ? ? 124.33 118.30 6.03 0.90 N 11 1 N A HIS 46 ? ? CA A HIS 46 ? ? CB A HIS 46 ? ? 92.62 110.60 -17.98 1.80 N 12 1 OE1 A GLU 67 ? ? CD A GLU 67 ? ? OE2 A GLU 67 ? ? 130.60 123.30 7.30 1.20 N 13 1 CB A PHE 76 ? ? CG A PHE 76 ? ? CD2 A PHE 76 ? ? 79.59 120.80 -41.21 0.70 N 14 1 N A ALA 90 ? ? CA A ALA 90 ? ? CB A ALA 90 ? ? 120.31 110.10 10.21 1.40 N 15 1 CB A TYR 93 ? ? CG A TYR 93 ? ? CD1 A TYR 93 ? ? 116.77 121.00 -4.23 0.60 N 16 1 CB A ASP 95 ? ? CG A ASP 95 ? ? OD1 A ASP 95 ? ? 124.54 118.30 6.24 0.90 N 17 1 N A ALA 109 ? ? CA A ALA 109 ? ? CB A ALA 109 ? ? 87.95 110.10 -22.15 1.40 N 18 1 N A GLN 123 ? ? CA A GLN 123 ? ? C A GLN 123 ? ? 129.07 111.00 18.07 2.70 N 19 1 OE1 A GLU 129 ? ? CD A GLU 129 ? ? OE2 A GLU 129 ? ? 131.06 123.30 7.76 1.20 N 20 1 CG A GLN 131 ? ? CD A GLN 131 ? ? OE1 A GLN 131 ? ? 107.79 121.60 -13.81 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 2 ? ? 22.63 -127.41 2 1 THR A 4 ? ? -0.65 -70.17 3 1 LYS A 5 ? ? 104.68 53.40 4 1 LYS A 6 ? ? 99.26 -127.90 5 1 PRO A 11 ? ? -52.95 -173.45 6 1 ALA A 12 ? ? 167.36 160.87 7 1 ILE A 15 ? ? -107.90 -69.60 8 1 ASP A 19 ? ? -150.62 -155.74 9 1 MET A 26 ? ? -99.06 57.35 10 1 LYS A 28 ? ? 63.31 80.51 11 1 GLN A 30 ? ? 122.50 119.69 12 1 LEU A 38 ? ? 45.39 84.48 13 1 VAL A 39 ? ? 164.89 138.14 14 1 GLU A 43 ? ? -41.97 151.68 15 1 THR A 44 ? ? -130.77 -40.16 16 1 LYS A 45 ? ? -108.72 -155.49 17 1 HIS A 46 ? ? 52.98 119.84 18 1 LYS A 48 ? ? -38.86 54.41 19 1 LYS A 49 ? ? 146.88 -109.45 20 1 LYS A 53 ? ? -38.87 119.27 21 1 TYR A 54 ? ? 89.77 25.88 22 1 ALA A 58 ? ? -40.14 -17.80 23 1 PHE A 61 ? ? -125.09 -50.91 24 1 LYS A 63 ? ? -42.38 -92.70 25 1 LYS A 64 ? ? -35.57 -76.35 26 1 MET A 65 ? ? -19.11 -41.20 27 1 ASN A 77 ? ? -72.68 -135.27 28 1 LYS A 84 ? ? -62.00 75.22 29 1 TYR A 85 ? ? -174.42 -28.12 30 1 ILE A 92 ? ? 1.81 126.21 31 1 TYR A 113 ? ? 57.56 106.53 32 1 TYR A 115 ? ? 19.35 133.76 33 1 ASN A 119 ? ? -152.17 50.47 34 1 HIS A 121 ? ? -170.83 14.09 35 1 GLU A 122 ? ? -44.97 -97.62 36 1 GLN A 123 ? ? -19.75 -37.76 37 1 HIS A 124 ? ? -55.96 -71.29 38 1 LYS A 136 ? ? 100.03 77.66 39 1 ASN A 138 ? ? 36.49 -116.54 40 1 ILE A 139 ? ? -37.03 -85.33 41 1 TRP A 140 ? ? -35.32 -4.38 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 PHE A 76 ? ? 0.352 'SIDE CHAIN' 2 1 ARG A 87 ? ? 0.119 'SIDE CHAIN' 3 1 ARG A 105 ? ? 0.208 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 142 ? A GLU 142 2 1 Y 1 A ASN 143 ? A ASN 143 3 1 Y 1 A ASP 144 ? A ASP 144 4 1 Y 1 A ALA 145 ? A ALA 145 5 1 Y 1 A ASP 146 ? A ASP 146 6 1 Y 1 A SER 147 ? A SER 147 7 1 Y 1 A GLY 148 ? A GLY 148 8 1 Y 1 A GLN 149 ? A GLN 149 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 "THYMIDINE-3',5'-DIPHOSPHATE" THP #