data_2SSP # _entry.id 2SSP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2SSP pdb_00002ssp 10.2210/pdb2ssp/pdb NDB PD0053 ? ? RCSB RCSB000969 ? ? WWPDB D_1000000969 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2SSP _pdbx_database_status.recvd_initial_deposition_date 1999-04-28 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Parikh, S.S.' 1 'Mol, C.D.' 2 'Slupphaug, G.' 3 'Bharati, S.' 4 'Krokan, H.E.' 5 'Tainer, J.A.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.' 'EMBO J.' 17 5214 5226 1998 EMJODG UK 0261-4189 0897 ? 9724657 10.1093/emboj/17.17.5214 1 'A Nucleotide-Flipping Mechanism from the Structure of Human Uracil-DNA Glycosylase Bound to DNA' Nature 384 87 ? 1996 NATUAS UK 0028-0836 0006 ? ? 10.1038/384087a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parikh, S.S.' 1 ? primary 'Mol, C.D.' 2 ? primary 'Slupphaug, G.' 3 ? primary 'Bharati, S.' 4 ? primary 'Krokan, H.E.' 5 ? primary 'Tainer, J.A.' 6 ? 1 'Slupphaug, G.' 7 ? 1 'Mol, C.D.' 8 ? 1 'Kavli, B.' 9 ? 1 'Arvai, A.S.' 10 ? 1 'Krokan, H.E.' 11 ? 1 'Tainer, J.A.' 12 ? # _cell.entry_id 2SSP _cell.length_a 120.300 _cell.length_b 48.800 _cell.length_c 65.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2SSP _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*GP*TP*(AAB)P*AP*TP*CP*TP*T)-3') ; 2892.878 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3') ; 3399.276 1 ? ? ? ? 3 polymer man 'PROTEIN (URACIL-DNA GLYCOSYLASE)' 25502.057 1 3.2.2.3 L272A MITOCHONDRIAL ? 4 water nat water 18.015 238 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'UDG, UNG' # _entity_name_sys.entity_id 3 _entity_name_sys.name 'EC 3.2.2.3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DT)(DG)(DT)(AAB)(DA)(DT)(DC)(DT)(DT)' CTGTXATCTT A ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DG)(DA)(DT)(DA)(DA)(DC)(DA)(DG)' AAAGATAACAG B ? 3 'polypeptide(L)' no no ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPASVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPASVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DG n 1 4 DT n 1 5 AAB n 1 6 DA n 1 7 DT n 1 8 DC n 1 9 DT n 1 10 DT n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DC n 2 10 DA n 2 11 DG n 3 1 MET n 3 2 GLU n 3 3 PHE n 3 4 PHE n 3 5 GLY n 3 6 GLU n 3 7 SER n 3 8 TRP n 3 9 LYS n 3 10 LYS n 3 11 HIS n 3 12 LEU n 3 13 SER n 3 14 GLY n 3 15 GLU n 3 16 PHE n 3 17 GLY n 3 18 LYS n 3 19 PRO n 3 20 TYR n 3 21 PHE n 3 22 ILE n 3 23 LYS n 3 24 LEU n 3 25 MET n 3 26 GLY n 3 27 PHE n 3 28 VAL n 3 29 ALA n 3 30 GLU n 3 31 GLU n 3 32 ARG n 3 33 LYS n 3 34 HIS n 3 35 TYR n 3 36 THR n 3 37 VAL n 3 38 TYR n 3 39 PRO n 3 40 PRO n 3 41 PRO n 3 42 HIS n 3 43 GLN n 3 44 VAL n 3 45 PHE n 3 46 THR n 3 47 TRP n 3 48 THR n 3 49 GLN n 3 50 MET n 3 51 CYS n 3 52 ASP n 3 53 ILE n 3 54 LYS n 3 55 ASP n 3 56 VAL n 3 57 LYS n 3 58 VAL n 3 59 VAL n 3 60 ILE n 3 61 LEU n 3 62 GLY n 3 63 GLN n 3 64 ASP n 3 65 PRO n 3 66 TYR n 3 67 HIS n 3 68 GLY n 3 69 PRO n 3 70 ASN n 3 71 GLN n 3 72 ALA n 3 73 HIS n 3 74 GLY n 3 75 LEU n 3 76 CYS n 3 77 PHE n 3 78 SER n 3 79 VAL n 3 80 GLN n 3 81 ARG n 3 82 PRO n 3 83 VAL n 3 84 PRO n 3 85 PRO n 3 86 PRO n 3 87 PRO n 3 88 SER n 3 89 LEU n 3 90 GLU n 3 91 ASN n 3 92 ILE n 3 93 TYR n 3 94 LYS n 3 95 GLU n 3 96 LEU n 3 97 SER n 3 98 THR n 3 99 ASP n 3 100 ILE n 3 101 GLU n 3 102 ASP n 3 103 PHE n 3 104 VAL n 3 105 HIS n 3 106 PRO n 3 107 GLY n 3 108 HIS n 3 109 GLY n 3 110 ASP n 3 111 LEU n 3 112 SER n 3 113 GLY n 3 114 TRP n 3 115 ALA n 3 116 LYS n 3 117 GLN n 3 118 GLY n 3 119 VAL n 3 120 LEU n 3 121 LEU n 3 122 LEU n 3 123 ASN n 3 124 ALA n 3 125 VAL n 3 126 LEU n 3 127 THR n 3 128 VAL n 3 129 ARG n 3 130 ALA n 3 131 HIS n 3 132 GLN n 3 133 ALA n 3 134 ASN n 3 135 SER n 3 136 HIS n 3 137 LYS n 3 138 GLU n 3 139 ARG n 3 140 GLY n 3 141 TRP n 3 142 GLU n 3 143 GLN n 3 144 PHE n 3 145 THR n 3 146 ASP n 3 147 ALA n 3 148 VAL n 3 149 VAL n 3 150 SER n 3 151 TRP n 3 152 LEU n 3 153 ASN n 3 154 GLN n 3 155 ASN n 3 156 SER n 3 157 ASN n 3 158 GLY n 3 159 LEU n 3 160 VAL n 3 161 PHE n 3 162 LEU n 3 163 LEU n 3 164 TRP n 3 165 GLY n 3 166 SER n 3 167 TYR n 3 168 ALA n 3 169 GLN n 3 170 LYS n 3 171 LYS n 3 172 GLY n 3 173 SER n 3 174 ALA n 3 175 ILE n 3 176 ASP n 3 177 ARG n 3 178 LYS n 3 179 ARG n 3 180 HIS n 3 181 HIS n 3 182 VAL n 3 183 LEU n 3 184 GLN n 3 185 THR n 3 186 ALA n 3 187 HIS n 3 188 PRO n 3 189 SER n 3 190 PRO n 3 191 ALA n 3 192 SER n 3 193 VAL n 3 194 TYR n 3 195 ARG n 3 196 GLY n 3 197 PHE n 3 198 PHE n 3 199 GLY n 3 200 CYS n 3 201 ARG n 3 202 HIS n 3 203 PHE n 3 204 SER n 3 205 LYS n 3 206 THR n 3 207 ASN n 3 208 GLU n 3 209 LEU n 3 210 LEU n 3 211 GLN n 3 212 LYS n 3 213 SER n 3 214 GLY n 3 215 LYS n 3 216 LYS n 3 217 PRO n 3 218 ILE n 3 219 ASP n 3 220 TRP n 3 221 LYS n 3 222 GLU n 3 223 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP UNG_HUMAN P13051 3 94 ? ? 2 PDB 2SSP 2SSP 1 ? ? ? 3 PDB 2SSP 2SSP 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2SSP E 4 ? 223 ? P13051 94 ? 313 ? 85 304 2 2 2SSP A 1 ? 10 ? 2SSP 1 ? 10 ? 1 10 3 3 2SSP B 1 ? 11 ? 2SSP 21 ? 31 ? 21 31 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AAB 'DNA linking' . "2'-DEOXY-RIBOFURANOSE-5'-MONOPHOSPHATE" 'ABASIC DEOXYRIBOSE' 'C5 H11 O7 P' 214.110 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2SSP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.0 _exptl_crystal.density_percent_sol 59 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '20% PEG 4000, 100 MM HEPES PH 6.5, 10% DIOXANE, 1 MM DITHIOTHREITOL, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 4000' ? ? ? 1 2 1 HEPES ? ? ? 1 3 1 DIOXANE ? ? ? 1 4 1 DITHIOTHREITOL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 1996-08-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.080 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength 1.080 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2SSP _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.25 _reflns.number_obs 18564 _reflns.number_all ? _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.082 _reflns.pdbx_netI_over_sigmaI 15.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.3 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 94.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.231 _reflns_shell.meanI_over_sigI_obs 4.7 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2SSP _refine.ls_number_reflns_obs 17195 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF 100000.0 _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 97.7 _refine.ls_R_factor_obs 0.184 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.257 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -11.3 _refine.aniso_B[2][2] 5.25 _refine.aniso_B[3][3] 6.05 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 0.0 _refine.aniso_B[2][3] 0.0 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1AKZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1805 _refine_hist.pdbx_number_atoms_nucleic_acid 417 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 238 _refine_hist.number_atoms_total 2460 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.41 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.25 _refine_ls_shell.d_res_low 2.35 _refine_ls_shell.number_reflns_R_work 1607 _refine_ls_shell.R_factor_R_work 0.236 _refine_ls_shell.percent_reflns_obs 90.2 _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM_NDBX.DNA TOP_NDBX.DNA 'X-RAY DIFFRACTION' 3 PARAM19.SOL TOPH19.SOL 'X-RAY DIFFRACTION' # _struct.entry_id 2SSP _struct.title 'LEUCINE-272-ALANINE URACIL-DNA GLYCOSYLASE BOUND TO ABASIC SITE-CONTAINING DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2SSP _struct_keywords.pdbx_keywords PROTEIN/DNA _struct_keywords.text 'DNA GLYCOSYLASE, DNA BASE EXCISION REPAIR, URACIL, DNA, PROTEIN/DNA, ABASIC SITE, PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU C 6 ? PHE C 16 ? GLU E 87 PHE E 97 1 ? 11 HELX_P HELX_P2 2 PRO C 19 ? HIS C 34 ? PRO E 100 HIS E 115 1 ? 16 HELX_P HELX_P3 3 PRO C 41 ? GLN C 43 ? PRO E 122 GLN E 124 5 ? 3 HELX_P HELX_P4 4 THR C 46 ? GLN C 49 ? THR E 127 GLN E 130 1 ? 4 HELX_P HELX_P5 5 ILE C 53 ? ASP C 55 ? ILE E 134 ASP E 136 5 ? 3 HELX_P HELX_P6 6 PRO C 87 ? ASP C 99 ? PRO E 168 ASP E 180 1 ? 13 HELX_P HELX_P7 7 SER C 112 ? GLN C 117 ? SER E 193 GLN E 198 1 ? 6 HELX_P HELX_P8 8 TRP C 141 ? GLN C 154 ? TRP E 222 GLN E 235 1 ? 14 HELX_P HELX_P9 9 SER C 166 ? ALA C 174 ? SER E 247 ALA E 255 1 ? 9 HELX_P HELX_P10 10 PRO C 190 ? ARG C 195 ? PRO E 271 ARG E 276 1 ? 6 HELX_P HELX_P11 11 HIS C 202 ? LYS C 212 ? HIS E 283 LYS E 293 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DT 4 "O3'" ? ? ? 1_555 A AAB 5 P ? ? A DT 4 A AAB 5 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale2 covale one ? A AAB 5 "O3'" ? ? ? 1_555 A DA 6 P ? ? A AAB 5 A DA 6 1_555 ? ? ? ? ? ? ? 1.599 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 2 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 2 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 3 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 4 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 4 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 6 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 6 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 7 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 7 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 8 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 8 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 8 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 9 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 9 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 10 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 10 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 38 C . ? TYR 119 E PRO 39 C ? PRO 120 E 1 -0.29 2 ARG 81 C . ? ARG 162 E PRO 82 C ? PRO 163 E 1 0.74 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 119 ? ASN C 123 ? VAL E 200 ASN E 204 A 2 VAL C 58 ? GLY C 62 ? VAL E 139 GLY E 143 A 3 VAL C 160 ? TRP C 164 ? VAL E 241 TRP E 245 A 4 HIS C 181 ? THR C 185 ? HIS E 262 THR E 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU C 120 ? O LEU E 201 N VAL C 58 ? N VAL E 139 A 2 3 O VAL C 59 ? O VAL E 140 N VAL C 160 ? N VAL E 241 A 3 4 O PHE C 161 ? O PHE E 242 N HIS C 181 ? N HIS E 262 # _database_PDB_matrix.entry_id 2SSP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2SSP _atom_sites.fract_transf_matrix[1][1] 0.008312 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020492 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015244 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 AAB 5 5 5 AAB D1P A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DT 10 10 10 DT T A . n B 2 1 DA 1 21 21 DA A B . n B 2 2 DA 2 22 22 DA A B . n B 2 3 DA 3 23 23 DA A B . n B 2 4 DG 4 24 24 DG G B . n B 2 5 DA 5 25 25 DA A B . n B 2 6 DT 6 26 26 DT T B . n B 2 7 DA 7 27 27 DA A B . n B 2 8 DA 8 28 28 DA A B . n B 2 9 DC 9 29 29 DC C B . n B 2 10 DA 10 30 30 DA A B . n B 2 11 DG 11 31 31 DG G B . n C 3 1 MET 1 82 82 MET MET E . n C 3 2 GLU 2 83 83 GLU GLU E . n C 3 3 PHE 3 84 84 PHE PHE E . n C 3 4 PHE 4 85 85 PHE PHE E . n C 3 5 GLY 5 86 86 GLY GLY E . n C 3 6 GLU 6 87 87 GLU GLU E . n C 3 7 SER 7 88 88 SER SER E . n C 3 8 TRP 8 89 89 TRP TRP E . n C 3 9 LYS 9 90 90 LYS LYS E . n C 3 10 LYS 10 91 91 LYS LYS E . n C 3 11 HIS 11 92 92 HIS HIS E . n C 3 12 LEU 12 93 93 LEU LEU E . n C 3 13 SER 13 94 94 SER SER E . n C 3 14 GLY 14 95 95 GLY GLY E . n C 3 15 GLU 15 96 96 GLU GLU E . n C 3 16 PHE 16 97 97 PHE PHE E . n C 3 17 GLY 17 98 98 GLY GLY E . n C 3 18 LYS 18 99 99 LYS LYS E . n C 3 19 PRO 19 100 100 PRO PRO E . n C 3 20 TYR 20 101 101 TYR TYR E . n C 3 21 PHE 21 102 102 PHE PHE E . n C 3 22 ILE 22 103 103 ILE ILE E . n C 3 23 LYS 23 104 104 LYS LYS E . n C 3 24 LEU 24 105 105 LEU LEU E . n C 3 25 MET 25 106 106 MET MET E . n C 3 26 GLY 26 107 107 GLY GLY E . n C 3 27 PHE 27 108 108 PHE PHE E . n C 3 28 VAL 28 109 109 VAL VAL E . n C 3 29 ALA 29 110 110 ALA ALA E . n C 3 30 GLU 30 111 111 GLU GLU E . n C 3 31 GLU 31 112 112 GLU GLU E . n C 3 32 ARG 32 113 113 ARG ARG E . n C 3 33 LYS 33 114 114 LYS LYS E . n C 3 34 HIS 34 115 115 HIS HIS E . n C 3 35 TYR 35 116 116 TYR TYR E . n C 3 36 THR 36 117 117 THR THR E . n C 3 37 VAL 37 118 118 VAL VAL E . n C 3 38 TYR 38 119 119 TYR TYR E . n C 3 39 PRO 39 120 120 PRO PRO E . n C 3 40 PRO 40 121 121 PRO PRO E . n C 3 41 PRO 41 122 122 PRO PRO E . n C 3 42 HIS 42 123 123 HIS HIS E . n C 3 43 GLN 43 124 124 GLN GLN E . n C 3 44 VAL 44 125 125 VAL VAL E . n C 3 45 PHE 45 126 126 PHE PHE E . n C 3 46 THR 46 127 127 THR THR E . n C 3 47 TRP 47 128 128 TRP TRP E . n C 3 48 THR 48 129 129 THR THR E . n C 3 49 GLN 49 130 130 GLN GLN E . n C 3 50 MET 50 131 131 MET MET E . n C 3 51 CYS 51 132 132 CYS CYS E . n C 3 52 ASP 52 133 133 ASP ASP E . n C 3 53 ILE 53 134 134 ILE ILE E . n C 3 54 LYS 54 135 135 LYS LYS E . n C 3 55 ASP 55 136 136 ASP ASP E . n C 3 56 VAL 56 137 137 VAL VAL E . n C 3 57 LYS 57 138 138 LYS LYS E . n C 3 58 VAL 58 139 139 VAL VAL E . n C 3 59 VAL 59 140 140 VAL VAL E . n C 3 60 ILE 60 141 141 ILE ILE E . n C 3 61 LEU 61 142 142 LEU LEU E . n C 3 62 GLY 62 143 143 GLY GLY E . n C 3 63 GLN 63 144 144 GLN GLN E . n C 3 64 ASP 64 145 145 ASP ASP E . n C 3 65 PRO 65 146 146 PRO PRO E . n C 3 66 TYR 66 147 147 TYR TYR E . n C 3 67 HIS 67 148 148 HIS HIS E . n C 3 68 GLY 68 149 149 GLY GLY E . n C 3 69 PRO 69 150 150 PRO PRO E . n C 3 70 ASN 70 151 151 ASN ASN E . n C 3 71 GLN 71 152 152 GLN GLN E . n C 3 72 ALA 72 153 153 ALA ALA E . n C 3 73 HIS 73 154 154 HIS HIS E . n C 3 74 GLY 74 155 155 GLY GLY E . n C 3 75 LEU 75 156 156 LEU LEU E . n C 3 76 CYS 76 157 157 CYS CYS E . n C 3 77 PHE 77 158 158 PHE PHE E . n C 3 78 SER 78 159 159 SER SER E . n C 3 79 VAL 79 160 160 VAL VAL E . n C 3 80 GLN 80 161 161 GLN GLN E . n C 3 81 ARG 81 162 162 ARG ARG E . n C 3 82 PRO 82 163 163 PRO PRO E . n C 3 83 VAL 83 164 164 VAL VAL E . n C 3 84 PRO 84 165 165 PRO PRO E . n C 3 85 PRO 85 166 166 PRO PRO E . n C 3 86 PRO 86 167 167 PRO PRO E . n C 3 87 PRO 87 168 168 PRO PRO E . n C 3 88 SER 88 169 169 SER SER E . n C 3 89 LEU 89 170 170 LEU LEU E . n C 3 90 GLU 90 171 171 GLU GLU E . n C 3 91 ASN 91 172 172 ASN ASN E . n C 3 92 ILE 92 173 173 ILE ILE E . n C 3 93 TYR 93 174 174 TYR TYR E . n C 3 94 LYS 94 175 175 LYS LYS E . n C 3 95 GLU 95 176 176 GLU GLU E . n C 3 96 LEU 96 177 177 LEU LEU E . n C 3 97 SER 97 178 178 SER SER E . n C 3 98 THR 98 179 179 THR THR E . n C 3 99 ASP 99 180 180 ASP ASP E . n C 3 100 ILE 100 181 181 ILE ILE E . n C 3 101 GLU 101 182 182 GLU GLU E . n C 3 102 ASP 102 183 183 ASP ASP E . n C 3 103 PHE 103 184 184 PHE PHE E . n C 3 104 VAL 104 185 185 VAL VAL E . n C 3 105 HIS 105 186 186 HIS HIS E . n C 3 106 PRO 106 187 187 PRO PRO E . n C 3 107 GLY 107 188 188 GLY GLY E . n C 3 108 HIS 108 189 189 HIS HIS E . n C 3 109 GLY 109 190 190 GLY GLY E . n C 3 110 ASP 110 191 191 ASP ASP E . n C 3 111 LEU 111 192 192 LEU LEU E . n C 3 112 SER 112 193 193 SER SER E . n C 3 113 GLY 113 194 194 GLY GLY E . n C 3 114 TRP 114 195 195 TRP TRP E . n C 3 115 ALA 115 196 196 ALA ALA E . n C 3 116 LYS 116 197 197 LYS LYS E . n C 3 117 GLN 117 198 198 GLN GLN E . n C 3 118 GLY 118 199 199 GLY GLY E . n C 3 119 VAL 119 200 200 VAL VAL E . n C 3 120 LEU 120 201 201 LEU LEU E . n C 3 121 LEU 121 202 202 LEU LEU E . n C 3 122 LEU 122 203 203 LEU LEU E . n C 3 123 ASN 123 204 204 ASN ASN E . n C 3 124 ALA 124 205 205 ALA ALA E . n C 3 125 VAL 125 206 206 VAL VAL E . n C 3 126 LEU 126 207 207 LEU LEU E . n C 3 127 THR 127 208 208 THR THR E . n C 3 128 VAL 128 209 209 VAL VAL E . n C 3 129 ARG 129 210 210 ARG ARG E . n C 3 130 ALA 130 211 211 ALA ALA E . n C 3 131 HIS 131 212 212 HIS HIS E . n C 3 132 GLN 132 213 213 GLN GLN E . n C 3 133 ALA 133 214 214 ALA ALA E . n C 3 134 ASN 134 215 215 ASN ASN E . n C 3 135 SER 135 216 216 SER SER E . n C 3 136 HIS 136 217 217 HIS HIS E . n C 3 137 LYS 137 218 218 LYS LYS E . n C 3 138 GLU 138 219 219 GLU GLU E . n C 3 139 ARG 139 220 220 ARG ARG E . n C 3 140 GLY 140 221 221 GLY GLY E . n C 3 141 TRP 141 222 222 TRP TRP E . n C 3 142 GLU 142 223 223 GLU GLU E . n C 3 143 GLN 143 224 224 GLN GLN E . n C 3 144 PHE 144 225 225 PHE PHE E . n C 3 145 THR 145 226 226 THR THR E . n C 3 146 ASP 146 227 227 ASP ASP E . n C 3 147 ALA 147 228 228 ALA ALA E . n C 3 148 VAL 148 229 229 VAL VAL E . n C 3 149 VAL 149 230 230 VAL VAL E . n C 3 150 SER 150 231 231 SER SER E . n C 3 151 TRP 151 232 232 TRP TRP E . n C 3 152 LEU 152 233 233 LEU LEU E . n C 3 153 ASN 153 234 234 ASN ASN E . n C 3 154 GLN 154 235 235 GLN GLN E . n C 3 155 ASN 155 236 236 ASN ASN E . n C 3 156 SER 156 237 237 SER SER E . n C 3 157 ASN 157 238 238 ASN ASN E . n C 3 158 GLY 158 239 239 GLY GLY E . n C 3 159 LEU 159 240 240 LEU LEU E . n C 3 160 VAL 160 241 241 VAL VAL E . n C 3 161 PHE 161 242 242 PHE PHE E . n C 3 162 LEU 162 243 243 LEU LEU E . n C 3 163 LEU 163 244 244 LEU LEU E . n C 3 164 TRP 164 245 245 TRP TRP E . n C 3 165 GLY 165 246 246 GLY GLY E . n C 3 166 SER 166 247 247 SER SER E . n C 3 167 TYR 167 248 248 TYR TYR E . n C 3 168 ALA 168 249 249 ALA ALA E . n C 3 169 GLN 169 250 250 GLN GLN E . n C 3 170 LYS 170 251 251 LYS LYS E . n C 3 171 LYS 171 252 252 LYS LYS E . n C 3 172 GLY 172 253 253 GLY GLY E . n C 3 173 SER 173 254 254 SER SER E . n C 3 174 ALA 174 255 255 ALA ALA E . n C 3 175 ILE 175 256 256 ILE ILE E . n C 3 176 ASP 176 257 257 ASP ASP E . n C 3 177 ARG 177 258 258 ARG ARG E . n C 3 178 LYS 178 259 259 LYS LYS E . n C 3 179 ARG 179 260 260 ARG ARG E . n C 3 180 HIS 180 261 261 HIS HIS E . n C 3 181 HIS 181 262 262 HIS HIS E . n C 3 182 VAL 182 263 263 VAL VAL E . n C 3 183 LEU 183 264 264 LEU LEU E . n C 3 184 GLN 184 265 265 GLN GLN E . n C 3 185 THR 185 266 266 THR THR E . n C 3 186 ALA 186 267 267 ALA ALA E . n C 3 187 HIS 187 268 268 HIS HIS E . n C 3 188 PRO 188 269 269 PRO PRO E . n C 3 189 SER 189 270 270 SER SER E . n C 3 190 PRO 190 271 271 PRO PRO E . n C 3 191 ALA 191 272 272 ALA ALA E . n C 3 192 SER 192 273 273 SER SER E . n C 3 193 VAL 193 274 274 VAL VAL E . n C 3 194 TYR 194 275 275 TYR TYR E . n C 3 195 ARG 195 276 276 ARG ARG E . n C 3 196 GLY 196 277 277 GLY GLY E . n C 3 197 PHE 197 278 278 PHE PHE E . n C 3 198 PHE 198 279 279 PHE PHE E . n C 3 199 GLY 199 280 280 GLY GLY E . n C 3 200 CYS 200 281 281 CYS CYS E . n C 3 201 ARG 201 282 282 ARG ARG E . n C 3 202 HIS 202 283 283 HIS HIS E . n C 3 203 PHE 203 284 284 PHE PHE E . n C 3 204 SER 204 285 285 SER SER E . n C 3 205 LYS 205 286 286 LYS LYS E . n C 3 206 THR 206 287 287 THR THR E . n C 3 207 ASN 207 288 288 ASN ASN E . n C 3 208 GLU 208 289 289 GLU GLU E . n C 3 209 LEU 209 290 290 LEU LEU E . n C 3 210 LEU 210 291 291 LEU LEU E . n C 3 211 GLN 211 292 292 GLN GLN E . n C 3 212 LYS 212 293 293 LYS LYS E . n C 3 213 SER 213 294 294 SER SER E . n C 3 214 GLY 214 295 295 GLY GLY E . n C 3 215 LYS 215 296 296 LYS LYS E . n C 3 216 LYS 216 297 297 LYS LYS E . n C 3 217 PRO 217 298 298 PRO PRO E . n C 3 218 ILE 218 299 299 ILE ILE E . n C 3 219 ASP 219 300 300 ASP ASP E . n C 3 220 TRP 220 301 301 TRP TRP E . n C 3 221 LYS 221 302 302 LYS LYS E . n C 3 222 GLU 222 303 303 GLU GLU E . n C 3 223 LEU 223 304 304 LEU LEU E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 540 540 HOH HOH A . D 4 HOH 2 545 545 HOH HOH A . D 4 HOH 3 575 575 HOH HOH A . D 4 HOH 4 589 589 HOH HOH A . D 4 HOH 5 607 607 HOH HOH A . D 4 HOH 6 608 608 HOH HOH A . D 4 HOH 7 619 619 HOH HOH A . D 4 HOH 8 620 620 HOH HOH A . D 4 HOH 9 622 622 HOH HOH A . D 4 HOH 10 623 623 HOH HOH A . D 4 HOH 11 625 625 HOH HOH A . D 4 HOH 12 644 644 HOH HOH A . D 4 HOH 13 645 645 HOH HOH A . D 4 HOH 14 646 646 HOH HOH A . D 4 HOH 15 647 647 HOH HOH A . D 4 HOH 16 648 648 HOH HOH A . D 4 HOH 17 652 652 HOH HOH A . D 4 HOH 18 719 719 HOH HOH A . D 4 HOH 19 754 754 HOH HOH A . D 4 HOH 20 781 781 HOH HOH A . D 4 HOH 21 782 782 HOH HOH A . D 4 HOH 22 818 818 HOH HOH A . D 4 HOH 23 833 833 HOH HOH A . E 4 HOH 1 587 587 HOH HOH B . E 4 HOH 2 609 609 HOH HOH B . E 4 HOH 3 610 610 HOH HOH B . E 4 HOH 4 611 611 HOH HOH B . E 4 HOH 5 612 612 HOH HOH B . E 4 HOH 6 635 635 HOH HOH B . E 4 HOH 7 649 649 HOH HOH B . E 4 HOH 8 650 650 HOH HOH B . E 4 HOH 9 704 704 HOH HOH B . E 4 HOH 10 720 720 HOH HOH B . E 4 HOH 11 721 721 HOH HOH B . E 4 HOH 12 728 728 HOH HOH B . E 4 HOH 13 783 783 HOH HOH B . E 4 HOH 14 785 785 HOH HOH B . E 4 HOH 15 786 786 HOH HOH B . E 4 HOH 16 788 788 HOH HOH B . F 4 HOH 1 305 199 HOH HOH E . F 4 HOH 2 306 200 HOH HOH E . F 4 HOH 3 307 201 HOH HOH E . F 4 HOH 4 308 202 HOH HOH E . F 4 HOH 5 309 203 HOH HOH E . F 4 HOH 6 310 204 HOH HOH E . F 4 HOH 7 311 205 HOH HOH E . F 4 HOH 8 312 206 HOH HOH E . F 4 HOH 9 313 207 HOH HOH E . F 4 HOH 10 314 208 HOH HOH E . F 4 HOH 11 315 209 HOH HOH E . F 4 HOH 12 316 211 HOH HOH E . F 4 HOH 13 317 212 HOH HOH E . F 4 HOH 14 318 213 HOH HOH E . F 4 HOH 15 319 214 HOH HOH E . F 4 HOH 16 320 800 HOH HOH E . F 4 HOH 17 321 801 HOH HOH E . F 4 HOH 18 322 802 HOH HOH E . F 4 HOH 19 323 803 HOH HOH E . F 4 HOH 20 324 804 HOH HOH E . F 4 HOH 21 325 805 HOH HOH E . F 4 HOH 22 326 806 HOH HOH E . F 4 HOH 23 327 807 HOH HOH E . F 4 HOH 24 328 808 HOH HOH E . F 4 HOH 25 329 809 HOH HOH E . F 4 HOH 26 330 810 HOH HOH E . F 4 HOH 27 331 811 HOH HOH E . F 4 HOH 28 332 812 HOH HOH E . F 4 HOH 29 333 813 HOH HOH E . F 4 HOH 30 334 814 HOH HOH E . F 4 HOH 31 335 815 HOH HOH E . F 4 HOH 32 336 816 HOH HOH E . F 4 HOH 33 337 817 HOH HOH E . F 4 HOH 34 338 819 HOH HOH E . F 4 HOH 35 339 820 HOH HOH E . F 4 HOH 36 340 821 HOH HOH E . F 4 HOH 37 341 822 HOH HOH E . F 4 HOH 38 342 823 HOH HOH E . F 4 HOH 39 343 824 HOH HOH E . F 4 HOH 40 344 825 HOH HOH E . F 4 HOH 41 345 826 HOH HOH E . F 4 HOH 42 346 827 HOH HOH E . F 4 HOH 43 347 828 HOH HOH E . F 4 HOH 44 348 829 HOH HOH E . F 4 HOH 45 349 830 HOH HOH E . F 4 HOH 46 350 831 HOH HOH E . F 4 HOH 47 351 832 HOH HOH E . F 4 HOH 48 352 835 HOH HOH E . F 4 HOH 49 353 836 HOH HOH E . F 4 HOH 50 354 837 HOH HOH E . F 4 HOH 51 355 838 HOH HOH E . F 4 HOH 52 356 400 HOH HOH E . F 4 HOH 53 357 402 HOH HOH E . F 4 HOH 54 358 403 HOH HOH E . F 4 HOH 55 359 407 HOH HOH E . F 4 HOH 56 360 408 HOH HOH E . F 4 HOH 57 361 410 HOH HOH E . F 4 HOH 58 362 411 HOH HOH E . F 4 HOH 59 363 412 HOH HOH E . F 4 HOH 60 364 420 HOH HOH E . F 4 HOH 61 365 421 HOH HOH E . F 4 HOH 62 366 422 HOH HOH E . F 4 HOH 63 367 423 HOH HOH E . F 4 HOH 64 368 424 HOH HOH E . F 4 HOH 65 369 425 HOH HOH E . F 4 HOH 66 370 427 HOH HOH E . F 4 HOH 67 371 428 HOH HOH E . F 4 HOH 68 372 430 HOH HOH E . F 4 HOH 69 373 431 HOH HOH E . F 4 HOH 70 374 432 HOH HOH E . F 4 HOH 71 375 433 HOH HOH E . F 4 HOH 72 376 434 HOH HOH E . F 4 HOH 73 377 435 HOH HOH E . F 4 HOH 74 378 438 HOH HOH E . F 4 HOH 75 379 439 HOH HOH E . F 4 HOH 76 380 440 HOH HOH E . F 4 HOH 77 381 441 HOH HOH E . F 4 HOH 78 382 452 HOH HOH E . F 4 HOH 79 383 473 HOH HOH E . F 4 HOH 80 384 477 HOH HOH E . F 4 HOH 81 385 480 HOH HOH E . F 4 HOH 82 386 522 HOH HOH E . F 4 HOH 83 387 523 HOH HOH E . F 4 HOH 84 388 524 HOH HOH E . F 4 HOH 85 389 525 HOH HOH E . F 4 HOH 86 390 527 HOH HOH E . F 4 HOH 87 391 532 HOH HOH E . F 4 HOH 88 392 534 HOH HOH E . F 4 HOH 89 393 543 HOH HOH E . F 4 HOH 90 394 549 HOH HOH E . F 4 HOH 91 395 550 HOH HOH E . F 4 HOH 92 396 551 HOH HOH E . F 4 HOH 93 397 556 HOH HOH E . F 4 HOH 94 398 557 HOH HOH E . F 4 HOH 95 399 563 HOH HOH E . F 4 HOH 96 400 590 HOH HOH E . F 4 HOH 97 401 596 HOH HOH E . F 4 HOH 98 402 597 HOH HOH E . F 4 HOH 99 403 599 HOH HOH E . F 4 HOH 100 404 600 HOH HOH E . F 4 HOH 101 405 601 HOH HOH E . F 4 HOH 102 406 602 HOH HOH E . F 4 HOH 103 407 606 HOH HOH E . F 4 HOH 104 408 614 HOH HOH E . F 4 HOH 105 409 615 HOH HOH E . F 4 HOH 106 410 617 HOH HOH E . F 4 HOH 107 411 618 HOH HOH E . F 4 HOH 108 412 621 HOH HOH E . F 4 HOH 109 413 626 HOH HOH E . F 4 HOH 110 414 627 HOH HOH E . F 4 HOH 111 415 628 HOH HOH E . F 4 HOH 112 416 629 HOH HOH E . F 4 HOH 113 417 631 HOH HOH E . F 4 HOH 114 418 632 HOH HOH E . F 4 HOH 115 419 633 HOH HOH E . F 4 HOH 116 420 634 HOH HOH E . F 4 HOH 117 421 636 HOH HOH E . F 4 HOH 118 422 637 HOH HOH E . F 4 HOH 119 423 638 HOH HOH E . F 4 HOH 120 424 639 HOH HOH E . F 4 HOH 121 425 640 HOH HOH E . F 4 HOH 122 426 641 HOH HOH E . F 4 HOH 123 427 642 HOH HOH E . F 4 HOH 124 428 643 HOH HOH E . F 4 HOH 125 429 651 HOH HOH E . F 4 HOH 126 430 702 HOH HOH E . F 4 HOH 127 431 703 HOH HOH E . F 4 HOH 128 432 707 HOH HOH E . F 4 HOH 129 433 708 HOH HOH E . F 4 HOH 130 434 709 HOH HOH E . F 4 HOH 131 435 710 HOH HOH E . F 4 HOH 132 436 711 HOH HOH E . F 4 HOH 133 437 712 HOH HOH E . F 4 HOH 134 438 714 HOH HOH E . F 4 HOH 135 439 715 HOH HOH E . F 4 HOH 136 440 716 HOH HOH E . F 4 HOH 137 441 717 HOH HOH E . F 4 HOH 138 442 722 HOH HOH E . F 4 HOH 139 443 723 HOH HOH E . F 4 HOH 140 444 724 HOH HOH E . F 4 HOH 141 445 726 HOH HOH E . F 4 HOH 142 446 727 HOH HOH E . F 4 HOH 143 447 730 HOH HOH E . F 4 HOH 144 448 731 HOH HOH E . F 4 HOH 145 449 732 HOH HOH E . F 4 HOH 146 450 733 HOH HOH E . F 4 HOH 147 451 734 HOH HOH E . F 4 HOH 148 452 735 HOH HOH E . F 4 HOH 149 453 736 HOH HOH E . F 4 HOH 150 454 737 HOH HOH E . F 4 HOH 151 455 738 HOH HOH E . F 4 HOH 152 456 739 HOH HOH E . F 4 HOH 153 457 740 HOH HOH E . F 4 HOH 154 458 741 HOH HOH E . F 4 HOH 155 459 742 HOH HOH E . F 4 HOH 156 460 743 HOH HOH E . F 4 HOH 157 461 744 HOH HOH E . F 4 HOH 158 462 745 HOH HOH E . F 4 HOH 159 463 746 HOH HOH E . F 4 HOH 160 464 747 HOH HOH E . F 4 HOH 161 465 748 HOH HOH E . F 4 HOH 162 466 749 HOH HOH E . F 4 HOH 163 467 750 HOH HOH E . F 4 HOH 164 468 751 HOH HOH E . F 4 HOH 165 469 752 HOH HOH E . F 4 HOH 166 470 753 HOH HOH E . F 4 HOH 167 471 756 HOH HOH E . F 4 HOH 168 472 757 HOH HOH E . F 4 HOH 169 473 758 HOH HOH E . F 4 HOH 170 474 759 HOH HOH E . F 4 HOH 171 475 760 HOH HOH E . F 4 HOH 172 476 761 HOH HOH E . F 4 HOH 173 477 762 HOH HOH E . F 4 HOH 174 478 763 HOH HOH E . F 4 HOH 175 479 765 HOH HOH E . F 4 HOH 176 480 766 HOH HOH E . F 4 HOH 177 481 767 HOH HOH E . F 4 HOH 178 482 768 HOH HOH E . F 4 HOH 179 483 769 HOH HOH E . F 4 HOH 180 484 771 HOH HOH E . F 4 HOH 181 485 772 HOH HOH E . F 4 HOH 182 486 773 HOH HOH E . F 4 HOH 183 487 774 HOH HOH E . F 4 HOH 184 488 775 HOH HOH E . F 4 HOH 185 489 776 HOH HOH E . F 4 HOH 186 490 779 HOH HOH E . F 4 HOH 187 491 780 HOH HOH E . F 4 HOH 188 492 784 HOH HOH E . F 4 HOH 189 493 787 HOH HOH E . F 4 HOH 190 494 789 HOH HOH E . F 4 HOH 191 495 790 HOH HOH E . F 4 HOH 192 496 791 HOH HOH E . F 4 HOH 193 497 792 HOH HOH E . F 4 HOH 194 498 793 HOH HOH E . F 4 HOH 195 499 795 HOH HOH E . F 4 HOH 196 500 796 HOH HOH E . F 4 HOH 197 501 797 HOH HOH E . F 4 HOH 198 502 798 HOH HOH E . F 4 HOH 199 503 799 HOH HOH E . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-05-06 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-07-09 5 'Structure model' 1 4 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' pdbx_initial_refinement_model 3 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.851 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU E 83 ? ? -165.31 -145.59 2 1 GLN E 144 ? ? -91.00 -62.24 3 1 ASN E 151 ? ? 38.94 51.34 4 1 GLN E 152 ? ? -103.81 -65.14 5 1 HIS E 154 ? ? -150.33 24.54 6 1 PHE E 158 ? ? 73.16 -9.50 7 1 LEU E 202 ? ? -102.17 77.85 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2SSP 'b-form double helix' 2SSP 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.703 -0.266 0.164 -6.151 -11.630 6.922 1 A_DC1:DG31_B A 1 ? B 31 ? 19 1 1 A DT 2 1_555 B DA 10 1_555 -0.237 -0.148 0.485 -11.860 0.801 -2.070 2 A_DT2:DA30_B A 2 ? B 30 ? 20 1 1 A DG 3 1_555 B DC 9 1_555 -0.772 -0.273 -0.120 -6.996 -0.351 -0.897 3 A_DG3:DC29_B A 3 ? B 29 ? 19 1 1 A DT 4 1_555 B DA 8 1_555 -0.214 -0.143 -0.095 -6.755 -0.094 5.477 4 A_DT4:DA28_B A 4 ? B 28 ? 20 1 1 A DA 6 1_555 B DT 6 1_555 -0.077 -0.170 -0.121 -7.028 -7.599 -0.488 5 A_DA6:DT26_B A 6 ? B 26 ? 20 1 1 A DT 7 1_555 B DA 5 1_555 -0.122 -0.181 -0.067 5.908 -10.483 0.546 6 A_DT7:DA25_B A 7 ? B 25 ? 20 1 1 A DC 8 1_555 B DG 4 1_555 0.099 -0.149 -0.222 2.094 -13.384 -0.321 7 A_DC8:DG24_B A 8 ? B 24 ? 19 1 1 A DT 9 1_555 B DA 3 1_555 -0.131 -0.168 0.271 -10.009 -9.978 -0.930 8 A_DT9:DA23_B A 9 ? B 23 ? 20 1 1 A DT 10 1_555 B DA 2 1_555 0.569 -0.168 0.050 -8.004 -9.463 0.509 9 A_DT10:DA22_B A 10 ? B 22 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DT 2 1_555 B DA 10 1_555 -0.554 0.590 3.656 -3.274 -2.999 34.530 1.498 0.368 3.629 -5.027 5.488 34.806 1 AA_DC1DT2:DA30DG31_BB A 1 ? B 31 ? A 2 ? B 30 ? 1 A DT 2 1_555 B DA 10 1_555 A DG 3 1_555 B DC 9 1_555 0.632 1.000 3.230 7.196 1.233 38.237 1.350 -0.066 3.320 1.862 -10.864 38.902 2 AA_DT2DG3:DC29DA30_BB A 2 ? B 30 ? A 3 ? B 29 ? 1 A DG 3 1_555 B DC 9 1_555 A DT 4 1_555 B DA 8 1_555 0.252 0.107 3.343 -4.158 8.639 34.691 -1.087 -1.015 3.226 14.156 6.814 35.953 3 AA_DG3DT4:DA28DC29_BB A 3 ? B 29 ? A 4 ? B 28 ? 1 A DT 4 1_555 B DA 8 1_555 A DA 6 1_555 B DT 6 1_555 1.460 -1.006 6.955 1.748 26.227 43.235 -5.109 -1.458 5.581 32.294 -2.152 50.269 4 AA_DT4DA6:DT26DA28_BB A 4 ? B 28 ? A 6 ? B 26 ? 1 A DA 6 1_555 B DT 6 1_555 A DT 7 1_555 B DA 5 1_555 -0.315 -0.638 2.975 0.521 4.152 28.605 -2.103 0.734 2.850 8.348 -1.047 28.903 5 AA_DA6DT7:DA25DT26_BB A 6 ? B 26 ? A 7 ? B 25 ? 1 A DT 7 1_555 B DA 5 1_555 A DC 8 1_555 B DG 4 1_555 0.024 -0.113 3.379 2.265 1.038 35.965 -0.335 0.292 3.370 1.678 -3.663 36.048 6 AA_DT7DC8:DG24DA25_BB A 7 ? B 25 ? A 8 ? B 24 ? 1 A DC 8 1_555 B DG 4 1_555 A DT 9 1_555 B DA 3 1_555 0.619 -0.348 3.611 0.029 5.609 39.420 -1.224 -0.906 3.531 8.265 -0.042 39.801 7 AA_DC8DT9:DA23DG24_BB A 8 ? B 24 ? A 9 ? B 23 ? 1 A DT 9 1_555 B DA 3 1_555 A DT 10 1_555 B DA 2 1_555 0.004 0.046 3.222 0.935 4.119 34.464 -0.545 0.135 3.205 6.919 -1.571 34.714 8 AA_DT9DT10:DA22DA23_BB A 9 ? B 23 ? A 10 ? B 22 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AKZ _pdbx_initial_refinement_model.details 'PDB ENTRY 1AKZ' #