HEADER HYDROLASE/HYDROLASE INHIBITOR 26-OCT-81 2TPI TITLE ON THE DISORDERED ACTIVATION DOMAIN IN TRYPSINOGEN. TITLE 2 CHEMICAL LABELLING AND LOW-TEMPERATURE CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPSINOGEN; COMPND 3 CHAIN: Z; COMPND 4 EC: 3.4.21.4; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRYPSIN INHIBITOR; COMPND 8 CHAIN: I; COMPND 9 SYNONYM: BASIC PROTEASE INHIBITOR, APROTININ SOURCE MOL_ID: 1; SOURCE 2 MOL_ID: 2; SOURCE 3 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 4 ORGANISM_COMMON: CATTLE; SOURCE 5 ORGANISM_TAXID: 9913; SOURCE 6 ORGAN: PANCREAS KEYWDS COMPLEX (PROTEINASE/INHIBITOR), HYDROLASE/HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.WALTER,W.STEIGEMANN,T.P.SINGH,H.BARTUNIK,W.BODE,R.HUBER REVDAT 9 24-FEB-09 2TPI 1 VERSN REVDAT 8 15-JUL-91 2TPI 3 FTNOTE ATOM TER CONECT REVDAT 7 09-APR-85 2TPI 1 JRNL REVDAT 6 14-MAR-85 2TPI 3 SEQRES ATOM REVDAT 5 31-JAN-84 2TPI 1 REMARK REVDAT 4 30-SEP-83 2TPI 1 REVDAT REVDAT 3 13-JUN-83 2TPI 1 REMARK REVDAT 2 15-APR-82 2TPI 1 REMARK REVDAT 1 04-MAR-82 2TPI 0 JRNL AUTH J.WALTER,W.STEIGEMANN,T.P.SINGH,H.BARTUNIK,W.BODE, JRNL AUTH 2 R.HUBER JRNL TITL ON THE DISORDERED ACTIVATION DOMAIN IN JRNL TITL 2 TRYPSINOGEN. CHEMICAL LABELLING AND JRNL TITL 3 LOW-TEMPERATURE CRYSTALLOGRAPHY JRNL REF ACTA CRYSTALLOGR.,SECT.B V. 38 1462 1982 JRNL REFN ISSN 0108-7681 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.BODE REMARK 1 TITL THE TRANSITION OF BOVINE TRYPSINOGEN TO A REMARK 1 TITL 2 TRYPSIN-LIKE STATE UPON STRONG LIGAND BINDING. II. REMARK 1 TITL 3 THE BINDING OF THE PANCREATIC TRYPSIN INHIBITOR REMARK 1 TITL 4 AND OF ISOLEUCINE-VALINE AND OF SEQUENTIALLY REMARK 1 TITL 5 RELATED PEPTIDES TO TRYPSINOGEN AND TO REMARK 1 TITL 6 P-GUANIDINOBENZOATE-TRYPSINOGEN REMARK 1 REF J.MOL.BIOL. V. 127 357 1979 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.BODE,P.SCHWAGER,R.HUBER REMARK 1 TITL THE TRANSITION OF BOVINE TRYPSINOGEN TO A REMARK 1 TITL 2 TRYPSIN-LIKE STATE UPON STRONG LIGAND BINDING. THE REMARK 1 TITL 3 REFINED CRYSTAL STRUCTURES OF THE BOVINE REMARK 1 TITL 4 TRYPSINOGEN-PANCREATIC TRYPSIN INHIBITOR COMPLEX REMARK 1 TITL 5 AND OF ITS TERNARY COMPLEX WITH ILE-VAL AT 1.9 REMARK 1 TITL 6 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 118 99 1978 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH R.HUBER,W.BODE REMARK 1 TITL STRUCTURAL BASIS OF THE ACTIVATION AND ACTION OF REMARK 1 TITL 2 TRYPSIN REMARK 1 REF ACC.CHEM.RES. V. 11 114 1978 REMARK 1 REFN ISSN 0001-4842 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.HUBER,W.BODE,D.KUKLA,W.KOHL,C.A.RYAN REMARK 1 TITL THE STRUCTURE OF THE COMPLEX FORMED BY BOVINE REMARK 1 TITL 2 TRYPSIN AND BOVINE PANCREATIC TRYPSIN INHIBITOR. REMARK 1 TITL 3 III. STRUCTURE OF THE ANHYDRO-TRYPSIN-INHIBITOR REMARK 1 TITL 4 COMPLEX REMARK 1 REF BIOPHYS.STRUCT.MECH. V. 1 189 1975 REMARK 1 REFN ISSN 0340-1057 REMARK 1 REFERENCE 5 REMARK 1 AUTH R.HUBER,D.KUKLA,W.BODE,P.SCHWAGER,K.BARTELS, REMARK 1 AUTH 2 J.DEISENHOFER,W.STEIGEMANN REMARK 1 TITL STRUCTURE OF THE COMPLEX FORMED BY BOVINE TRYPSIN REMARK 1 TITL 2 AND BOVINE PANCREATIC TRYPSIN INHIBITOR. II. REMARK 1 TITL 3 CRYSTALLOGRAPHIC REFINEMENT AT 1.9 ANGSTROMS REMARK 1 TITL 4 RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 89 73 1974 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN THE DISULFIDE CYS 191 - CYS 220 A REMARK 3 MERCURY ATOM IS COVALENTLY BOUND BETWEEN THE TWO SULFUR ATOMS. REMARK 3 IT ADOPTS SEVERAL POSITIONS AS DO THE ADJACENT ATOMS. A REMARK 3 SPECIAL MERCURY-CYSTINE GROUP WAS CONSTRUCTED WHICH HAD THREE REMARK 3 INDEPENDENT POSITIONS FOR THE CB, SG AND HG ATOMS. REMARK 4 REMARK 4 2TPI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.83500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.08000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.44500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.83500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.08000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.44500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.83500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.08000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.44500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.83500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.08000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.44500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE RESIDUES 1016 AND 1017 REPRESENT A DIPEPTIDE (ILE-VAL) REMARK 400 BOUND TO THE ENZYME REMARK 400 REMARK 400 THE N-TERMINUS OF THE ZYMOGEN COMPONENT IS ORDERED ONLY REMARK 400 FROM GLY 19 ONWARDS. THIS ENTRY CONTAINS NO COORDINATES REMARK 400 FOR VAL 10 THROUGH GLY 18. ATOMS 1 THROUGH 17 BELONG TO REMARK 400 THE ILE-VAL-DIPEPTIDE. IN THE INHIBITOR COMPONENT ARG 1 REMARK 400 AND ALA 58 ARE DISORDERED AND NO COORDINATES ARE PRESENTED REMARK 400 FOR THEM. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL Z 10 REMARK 465 ASP Z 11 REMARK 465 ASP Z 12 REMARK 465 ASP Z 13 REMARK 465 ASP Z 14 REMARK 465 LYS Z 15 REMARK 465 ILE Z 16 REMARK 465 VAL Z 17 REMARK 465 GLY Z 18 REMARK 465 ARG I 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA I 58 CA C O CB REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA I 58 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER Z 49 OG REMARK 480 SER Z 61 OG REMARK 480 ASP Z 71 OD1 OD2 REMARK 480 GLU Z 77 OE1 OE2 REMARK 480 SER Z 86 OG REMARK 480 LYS Z 87 NZ REMARK 480 SER Z 88 OG REMARK 480 ASN Z 95 OD1 ND2 REMARK 480 SER Z 96 OG REMARK 480 ASN Z 97 OD1 ND2 REMARK 480 LYS Z 107 NZ REMARK 480 LYS Z 109 CD CE NZ REMARK 480 SER Z 110 OG REMARK 480 ASN Z 115 OD1 ND2 REMARK 480 ARG Z 117 CD NE CZ NH1 NH2 REMARK 480 SER Z 122 OG REMARK 480 GLN Z 135 OE1 NE2 REMARK 480 LYS Z 145 CE NZ REMARK 480 SER Z 146 OG REMARK 480 SER Z 147 OG REMARK 480 ASP Z 153 OD1 OD2 REMARK 480 LYS Z 159 CE NZ REMARK 480 ASP Z 165 OD1 OD2 REMARK 480 SER Z 166 OG REMARK 480 LYS Z 169 NZ REMARK 480 GLU Z 186 CD OE1 OE2 REMARK 480 LYS Z 188 CG CD CE NZ REMARK 480 SER Z 202 OG REMARK 480 LYS Z 204 CD CE NZ REMARK 480 SER Z 217 OG REMARK 480 GLN Z 221 OE1 NE2 REMARK 480 LYS Z 222 CG CD CE NZ REMARK 480 LYS Z 224 CE NZ REMARK 480 LYS Z 230 CE NZ REMARK 480 SER Z 236 OG REMARK 480 LYS Z 239 NZ REMARK 480 ASP I 3 OD1 OD2 REMARK 480 GLU I 7 CG CD OE1 OE2 REMARK 480 LYS I 26 CD CE NZ REMARK 480 GLN I 31 OE1 NE2 REMARK 480 LYS I 41 NZ REMARK 480 GLU I 49 OE1 OE2 REMARK 480 GLY I 57 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN Z 143 SG CYS Z 191 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH I 589 O HOH I 589 4575 0.83 REMARK 500 ND2 ASN Z 74 N ALA I 58 4575 1.44 REMARK 500 NZ LYS Z 109 O THR I 54 2575 1.57 REMARK 500 CG GLN I 31 O HOH I 589 4575 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP Z 51 NE1 TRP Z 51 CE2 -0.107 REMARK 500 TRP Z 141 NE1 TRP Z 141 CE2 -0.090 REMARK 500 TRP Z 215 NE1 TRP Z 215 CE2 -0.097 REMARK 500 TRP Z 237 NE1 TRP Z 237 CE2 -0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP Z 165 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 CYS Z 191 CB - CA - C ANGL. DEV. = 9.5 DEGREES REMARK 500 CYS Z 191 CB - CA - C ANGL. DEV. = -20.9 DEGREES REMARK 500 CYS Z 191 N - CA - CB ANGL. DEV. = -16.0 DEGREES REMARK 500 CYS Z 191 CA - CB - SG ANGL. DEV. = 12.2 DEGREES REMARK 500 CYS Z 220 CB - CA - C ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG I 53 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL Z 27 76.36 -118.34 REMARK 500 SER Z 37 37.31 -140.08 REMARK 500 ASP Z 71 -75.61 -127.34 REMARK 500 ASN Z 115 -149.65 -129.96 REMARK 500 SER Z 214 -73.87 -126.33 REMARK 500 ARG I 17 73.55 -119.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN Z 30 0.08 SIDE_CHAIN REMARK 500 ASN Z 79 0.09 SIDE_CHAIN REMARK 500 GLU Z 80 0.07 SIDE_CHAIN REMARK 500 ASN Z 95 0.09 SIDE_CHAIN REMARK 500 ASP Z 165 0.08 SIDE_CHAIN REMARK 500 GLN Z 175 0.07 SIDE_CHAIN REMARK 500 GLU Z 186 0.07 SIDE_CHAIN REMARK 500 GLN Z 192 0.08 SIDE_CHAIN REMARK 500 ASP Z 194 0.07 SIDE_CHAIN REMARK 500 GLN Z 210 0.07 SIDE_CHAIN REMARK 500 ASN Z 223 0.07 SIDE_CHAIN REMARK 500 ASN Z 245 0.10 SIDE_CHAIN REMARK 500 ASP I 3 0.08 SIDE_CHAIN REMARK 500 GLN I 31 0.08 SIDE_CHAIN REMARK 500 ASN I 43 0.07 SIDE_CHAIN REMARK 500 ASN I 44 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL Z 27 10.82 REMARK 500 GLU Z 70 -11.89 REMARK 500 SER Z 147 14.69 REMARK 500 PRO Z 198 -10.58 REMARK 500 ASN Z 233 11.41 REMARK 500 PRO I 2 12.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 CYS Z 191 45.2 L L OUTSIDE RANGE REMARK 500 GLN Z 192 19.7 L L OUTSIDE RANGE REMARK 500 THR I 54 22.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH Z 438 DISTANCE = 5.28 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 IN THE DISULFIDE CYS 191 - CYS 220 A MERCURY ATOM IS REMARK 600 COVALENTLY BOUND BETWEEN THE TWO SULFUR ATOMS. IT ADOPTS REMARK 600 SEVERAL POSITIONS AS DO THE ADJACENT ATOMS. A SPECIAL REMARK 600 MERCURY-CYSTINE GROUP WAS CONSTRUCTED WHICH HAD THREE REMARK 600 INDEPENDENT POSITIONS FOR THE CB, SG AND HG ATOMS. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG Z 1 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS Z 191 SG REMARK 620 2 CYS Z 220 SG 105.2 REMARK 620 3 HOH Z 596 O 105.3 135.9 REMARK 620 4 CYS Z 191 SG 25.8 112.5 108.9 REMARK 620 5 CYS Z 220 SG 120.1 24.0 133.2 116.8 REMARK 620 6 CYS Z 191 SG 36.0 102.2 121.2 14.5 103.1 REMARK 620 7 CYS Z 220 SG 85.3 62.1 151.3 69.7 51.0 55.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ILE Z 1016 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VAL Z 1017 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG Z 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE 229 AMINO ACIDS OF TRYPSINOGEN ARE IDENTIFIED BY THE REMARK 999 RESIDUE NUMBERS OF THE HOMOLOGOUS CHYMOTRYPSINOGEN. REMARK 999 IN THIS COMPLEX THE ZYMOGEN IS GIVEN THE CHAIN INDICATOR Z, REMARK 999 THE INHIBITOR IS GIVEN THE CHAIN INDICATOR I, AND THE REMARK 999 ILE-VAL DIPEPTIDE IS GIVEN THE CHAIN INDICATOR S. REMARK 999 A NULL (BLANK) CHAIN INDICATOR IS ASSIGNED TO THE WATER REMARK 999 MOLECULES. DBREF 2TPI Z 10 245 UNP P00760 TRY1_BOVIN 15 243 DBREF 2TPI I 1 58 UNP P00974 BPT1_BOVIN 36 93 SEQRES 1 Z 229 VAL ASP ASP ASP ASP LYS ILE VAL GLY GLY TYR THR CYS SEQRES 2 Z 229 GLY ALA ASN THR VAL PRO TYR GLN VAL SER LEU ASN SER SEQRES 3 Z 229 GLY TYR HIS PHE CYS GLY GLY SER LEU ILE ASN SER GLN SEQRES 4 Z 229 TRP VAL VAL SER ALA ALA HIS CYS TYR LYS SER GLY ILE SEQRES 5 Z 229 GLN VAL ARG LEU GLY GLU ASP ASN ILE ASN VAL VAL GLU SEQRES 6 Z 229 GLY ASN GLU GLN PHE ILE SER ALA SER LYS SER ILE VAL SEQRES 7 Z 229 HIS PRO SER TYR ASN SER ASN THR LEU ASN ASN ASP ILE SEQRES 8 Z 229 MET LEU ILE LYS LEU LYS SER ALA ALA SER LEU ASN SER SEQRES 9 Z 229 ARG VAL ALA SER ILE SER LEU PRO THR SER CYS ALA SER SEQRES 10 Z 229 ALA GLY THR GLN CYS LEU ILE SER GLY TRP GLY ASN THR SEQRES 11 Z 229 LYS SER SER GLY THR SER TYR PRO ASP VAL LEU LYS CYS SEQRES 12 Z 229 LEU LYS ALA PRO ILE LEU SER ASP SER SER CYS LYS SER SEQRES 13 Z 229 ALA TYR PRO GLY GLN ILE THR SER ASN MET PHE CYS ALA SEQRES 14 Z 229 GLY TYR LEU GLU GLY GLY LYS ASP SER CYS GLN GLY ASP SEQRES 15 Z 229 SER GLY GLY PRO VAL VAL CYS SER GLY LYS LEU GLN GLY SEQRES 16 Z 229 ILE VAL SER TRP GLY SER GLY CYS ALA GLN LYS ASN LYS SEQRES 17 Z 229 PRO GLY VAL TYR THR LYS VAL CYS ASN TYR VAL SER TRP SEQRES 18 Z 229 ILE LYS GLN THR ILE ALA SER ASN SEQRES 1 I 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 I 58 CYS LYS ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 I 58 ALA GLY LEU CYS GLN THR PHE VAL TYR GLY GLY CYS ARG SEQRES 4 I 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP CYS MET SEQRES 5 I 58 ARG THR CYS GLY GLY ALA HET ILE Z1016 8 HET VAL Z1017 8 HET HG Z 1 3 HETNAM ILE ISOLEUCINE HETNAM VAL VALINE HETNAM HG MERCURY (II) ION FORMUL 3 ILE C6 H13 N O2 FORMUL 4 VAL C5 H11 N O2 FORMUL 5 HG HG 2+ FORMUL 6 HOH *139(H2 O) HELIX 1 H1 SER Z 164 ILE Z 176 1SNGL ALPHA TURN,REST IRREG. 13 HELIX 2 H2 LYS Z 230 VAL Z 235 5CONTIGUOUS WITH H3 6 HELIX 3 H3 SER Z 236 ASN Z 245 1CONTIGUOUS WITH H2 10 HELIX 4 H4 SER I 47 GLY I 56 1 10 SHEET 1 S1 2 ALA I 16 ALA I 25 0 SHEET 2 S1 2 GLY I 28 GLY I 36 -1 SSBOND 1 CYS Z 22 CYS Z 157 1555 1555 2.04 SSBOND 2 CYS Z 42 CYS Z 58 1555 1555 2.04 SSBOND 3 CYS Z 128 CYS Z 232 1555 1555 2.02 SSBOND 4 CYS Z 136 CYS Z 201 1555 1555 2.08 SSBOND 5 CYS Z 168 CYS Z 182 1555 1555 2.05 SSBOND 6 CYS I 5 CYS I 55 1555 1555 2.03 SSBOND 7 CYS I 14 CYS I 38 1555 1555 2.03 SSBOND 8 CYS I 30 CYS I 51 1555 1555 2.03 LINK HG A HG Z 1 SG ACYS Z 191 1555 1555 2.34 LINK HG A HG Z 1 SG ACYS Z 220 1555 1555 2.31 LINK HG A HG Z 1 O HOH Z 596 1555 1555 2.59 LINK HG B HG Z 1 SG BCYS Z 191 1555 1555 2.36 LINK HG B HG Z 1 SG BCYS Z 220 1555 1555 2.30 LINK HG C HG Z 1 SG CCYS Z 191 1555 1555 2.31 LINK HG C HG Z 1 SG CCYS Z 220 1555 1555 2.35 LINK C ILE Z1016 N VAL Z1017 1555 1555 1.33 SITE 1 AC1 12 GLY Z 19 GLY Z 142 ASN Z 143 THR Z 144 SITE 2 AC1 12 LYS Z 156 LEU Z 158 ASP Z 189 CYS Z 191 SITE 3 AC1 12 ASP Z 194 HOH Z 429 HOH Z 430 VAL Z1017 SITE 1 AC2 11 HG Z 1 GLY Z 19 ASN Z 143 THR Z 144 SITE 2 AC2 11 LYS Z 188 GLY Z 188A ASP Z 189 CYS Z 191 SITE 3 AC2 11 CYS Z 220 HOH Z 456 ILE Z1016 SITE 1 AC3 7 ASN Z 143 LYS Z 145 SER Z 146 CYS Z 191 SITE 2 AC3 7 CYS Z 220 HOH Z 596 VAL Z1017 CRYST1 75.670 84.160 122.890 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013215 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008137 0.00000