HEADER LIGASE (SYNTHETASE) 29-JUN-89 2TS1 TITLE STRUCTURE OF TYROSYL-T/RNA SYNTHETASE REFINED AT 2.3 ANGSTROMS TITLE 2 RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL ADENYLATE TITLE 3 INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422 KEYWDS LIGASE (SYNTHETASE) EXPDTA X-RAY DIFFRACTION AUTHOR P.BRICK,T.N.BHAT,D.M.BLOW REVDAT 6 21-FEB-24 2TS1 1 REMARK REVDAT 5 13-JUL-11 2TS1 1 VERSN REVDAT 4 24-FEB-09 2TS1 1 VERSN REVDAT 3 01-APR-03 2TS1 1 JRNL REVDAT 2 15-JAN-90 2TS1 1 SPRSDE REVDAT 1 15-OCT-89 2TS1 0 SPRSDE 15-JAN-90 2TS1 1TS1 JRNL AUTH P.BRICK,T.N.BHAT,D.M.BLOW JRNL TITL STRUCTURE OF TYROSYL-TRNA SYNTHETASE REFINED AT 2.3 A JRNL TITL 2 RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL JRNL TITL 3 ADENYLATE INTERMEDIATE. JRNL REF J.MOL.BIOL. V. 208 83 1989 JRNL REFN ISSN 0022-2836 JRNL PMID 2504923 JRNL DOI 10.1016/0022-2836(89)90090-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.BRICK,D.M.BLOW REMARK 1 TITL CRYSTAL STRUCTURE OF A DELETION MUTANT OF A TYROSYL-T/RNA REMARK 1 TITL 2 SYNTHETASE COMPLEXED WITH TYROSINE REMARK 1 REF J.MOL.BIOL. V. 194 287 1987 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.MONTEILHET,D.M.BLOW,P.BRICK REMARK 1 TITL INTERACTION OF CRYSTALLINE TYROSOL-T/RNA SYNTHETASE WITH REMARK 1 TITL 2 ADENOSINE, ADENOSINE MONOPHOSPHATE, ADENOSINE TRIPHOSPHATE REMARK 1 TITL 3 AND PYROPHOSPHATE IN THE PRESENCE OF TYROSINOL REMARK 1 REF J.MOL.BIOL. V. 173 477 1984 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.N.BHAT,D.M.BLOW,P.BRICK,J.NYBORG REMARK 1 TITL TYROSYL-T/RNA SYNTHETASE FORMS A MONONUCLEOTIDE-BINDING FOLD REMARK 1 REF J.MOL.BIOL. V. 158 699 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH T.N.BHAT,D.M.BLOW REMARK 1 TITL A DENSITY-MODIFICATION METHOD FOR THE IMPROVEMENT OF POORLY REMARK 1 TITL 2 RESOLVED PROTEIN ELECTRON-DENSITY MAPS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.A V. 38 21 1982 REMARK 1 REFN ISSN 0108-7673 REMARK 1 REFERENCE 5 REMARK 1 AUTH C.MONTEILHET,D.M.BLOW REMARK 1 TITL BINDING OF TYROSINE, ADENOSINE TRIPHOSPHATE AND ANALOGUES TO REMARK 1 TITL 2 CRYSTALLINE TYROSYL TRANSFER RNA SYNTHETASE REMARK 1 REF J.MOL.BIOL. V. 122 407 1978 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 6 REMARK 1 AUTH D.M.BLOW,C.MONTEILHET,J.R.RUBIN REMARK 1 TITL STRUCTURE OF AMINOACYL T/RNA SYNTHETASES REMARK 1 REF PROC.FEBS MEET. V. 52 59 1978 REMARK 1 REFN ISSN 0071-4402 REMARK 1 REFERENCE 7 REMARK 1 AUTH D.M.BLOW,M.J.IRWIN,J.NYBORG REMARK 1 TITL THE PEPTIDE CHAIN OF TYROSYL T/RNA SYNTHETASE. NO EVIDENCE REMARK 1 TITL 2 FOR A SUPER-SECONDARY STRUCTURE OF FOUR ALPHA-HELICES REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 76 728 1977 REMARK 1 REFN ISSN 0006-291X REMARK 1 REFERENCE 8 REMARK 1 AUTH M.J.IRWIN,J.NYBORG,B.R.REID,D.M.BLOW REMARK 1 TITL THE CRYSTAL STRUCTURE OF TYROSYL-TRANSFER RNA SYNTHETASE AT REMARK 1 TITL 2 2.7 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 105 577 1976 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 9 REMARK 1 AUTH B.R.REID,G.L.E.KOCH,Y.BOULANGER,B.S.HARTLEY,D.M.BLOW REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES ON REMARK 1 TITL 2 TYROSYL-TRANSFER RNA SYNTHETASE FROM BACILLUS REMARK 1 TITL 3 STEAROTHERMOPHILUS REMARK 1 REF J.MOL.BIOL. V. 80 199 1973 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 24432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; 0.030 REMARK 3 ANGLE DISTANCE (A) : 0.044 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.047 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.013 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.140 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.190 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.270 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : 9.700 ; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.680 ; 1.750 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.760 ; 2.250 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.870 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.400 ; 2.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2TS1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.20000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.40000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 158.40000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 212 REMARK 465 ALA A 213 REMARK 465 GLU A 320 REMARK 465 ALA A 321 REMARK 465 LEU A 322 REMARK 465 PHE A 323 REMARK 465 SER A 324 REMARK 465 GLY A 325 REMARK 465 ASP A 326 REMARK 465 ILE A 327 REMARK 465 ALA A 328 REMARK 465 ASN A 329 REMARK 465 LEU A 330 REMARK 465 THR A 331 REMARK 465 ALA A 332 REMARK 465 ALA A 333 REMARK 465 GLU A 334 REMARK 465 ILE A 335 REMARK 465 GLU A 336 REMARK 465 GLN A 337 REMARK 465 GLY A 338 REMARK 465 PHE A 339 REMARK 465 LYS A 340 REMARK 465 ASP A 341 REMARK 465 VAL A 342 REMARK 465 PRO A 343 REMARK 465 SER A 344 REMARK 465 PHE A 345 REMARK 465 VAL A 346 REMARK 465 HIS A 347 REMARK 465 GLU A 348 REMARK 465 GLY A 349 REMARK 465 GLY A 350 REMARK 465 ASP A 351 REMARK 465 VAL A 352 REMARK 465 PRO A 353 REMARK 465 LEU A 354 REMARK 465 VAL A 355 REMARK 465 GLU A 356 REMARK 465 LEU A 357 REMARK 465 LEU A 358 REMARK 465 VAL A 359 REMARK 465 SER A 360 REMARK 465 ALA A 361 REMARK 465 GLY A 362 REMARK 465 ILE A 363 REMARK 465 SER A 364 REMARK 465 PRO A 365 REMARK 465 SER A 366 REMARK 465 LYS A 367 REMARK 465 ARG A 368 REMARK 465 GLN A 369 REMARK 465 ALA A 370 REMARK 465 ARG A 371 REMARK 465 GLU A 372 REMARK 465 ASP A 373 REMARK 465 ILE A 374 REMARK 465 GLN A 375 REMARK 465 ASN A 376 REMARK 465 GLY A 377 REMARK 465 ALA A 378 REMARK 465 ILE A 379 REMARK 465 TYR A 380 REMARK 465 VAL A 381 REMARK 465 ASN A 382 REMARK 465 GLY A 383 REMARK 465 GLU A 384 REMARK 465 ARG A 385 REMARK 465 LEU A 386 REMARK 465 GLN A 387 REMARK 465 ASP A 388 REMARK 465 VAL A 389 REMARK 465 GLY A 390 REMARK 465 ALA A 391 REMARK 465 ILE A 392 REMARK 465 LEU A 393 REMARK 465 THR A 394 REMARK 465 ALA A 395 REMARK 465 GLU A 396 REMARK 465 HIS A 397 REMARK 465 ARG A 398 REMARK 465 LEU A 399 REMARK 465 GLU A 400 REMARK 465 GLY A 401 REMARK 465 ARG A 402 REMARK 465 PHE A 403 REMARK 465 THR A 404 REMARK 465 VAL A 405 REMARK 465 ILE A 406 REMARK 465 ARG A 407 REMARK 465 ARG A 408 REMARK 465 GLY A 409 REMARK 465 LYS A 410 REMARK 465 LYS A 411 REMARK 465 LYS A 412 REMARK 465 TYR A 413 REMARK 465 TYR A 414 REMARK 465 LEU A 415 REMARK 465 ILE A 416 REMARK 465 ARG A 417 REMARK 465 TYR A 418 REMARK 465 ALA A 419 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CB CG SD CE REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 ILE A 158 CG1 CG2 CD1 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 THR A 160 OG1 CG2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 230 CD CE NZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 SER A 236 OG REMARK 470 GLU A 276 CD OE1 OE2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 GLU A 287 CD OE1 OE2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 LYS A 291 CD CE NZ REMARK 470 LYS A 296 CD CE NZ REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 SER A 319 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 GLU A 28 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 30 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 ASP A 38 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ALA A 41 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 56 NH1 - CZ - NH2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 64 CD - NE - CZ ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 GLU A 85 OE1 - CD - OE2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP A 110 CB - CG - OD1 ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP A 125 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 131 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 137 CD - NE - CZ ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 157 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 TYR A 169 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 MET A 171 CA - CB - CG ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 187 CD - NE - CZ ANGL. DEV. = -9.0 DEGREES REMARK 500 ASP A 194 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 207 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 214 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 ASP A 227 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 259 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 261 CG - CD - NE ANGL. DEV. = 15.6 DEGREES REMARK 500 ARG A 261 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 261 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 261 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 GLN A 283 CB - CG - CD ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG A 286 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 LEU A 298 CB - CG - CD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 313 CD - NE - CZ ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 100.80 -172.17 REMARK 500 SER A 156 -30.38 -38.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 2TS1 A 1 419 UNP P00952 SYY_BACST 1 419 SEQRES 1 A 419 MET ASP LEU LEU ALA GLU LEU GLN TRP ARG GLY LEU VAL SEQRES 2 A 419 ASN GLN THR THR ASP GLU ASP GLY LEU ARG LYS LEU LEU SEQRES 3 A 419 ASN GLU GLU ARG VAL THR LEU TYR CYS GLY PHE ASP PRO SEQRES 4 A 419 THR ALA ASP SER LEU HIS ILE GLY HIS LEU ALA THR ILE SEQRES 5 A 419 LEU THR MET ARG ARG PHE GLN GLN ALA GLY HIS ARG PRO SEQRES 6 A 419 ILE ALA LEU VAL GLY GLY ALA THR GLY LEU ILE GLY ASP SEQRES 7 A 419 PRO SER GLY LYS LYS SER GLU ARG THR LEU ASN ALA LYS SEQRES 8 A 419 GLU THR VAL GLU ALA TRP SER ALA ARG ILE LYS GLU GLN SEQRES 9 A 419 LEU GLY ARG PHE LEU ASP PHE GLU ALA ASP GLY ASN PRO SEQRES 10 A 419 ALA LYS ILE LYS ASN ASN TYR ASP TRP ILE GLY PRO LEU SEQRES 11 A 419 ASP VAL ILE THR PHE LEU ARG ASP VAL GLY LYS HIS PHE SEQRES 12 A 419 SER VAL ASN TYR MET MET ALA LYS GLU SER VAL GLN SER SEQRES 13 A 419 ARG ILE GLU THR GLY ILE SER PHE THR GLU PHE SER TYR SEQRES 14 A 419 MET MET LEU GLN ALA TYR ASP PHE LEU ARG LEU TYR GLU SEQRES 15 A 419 THR GLU GLY CYS ARG LEU GLN ILE GLY GLY SER ASP GLN SEQRES 16 A 419 TRP GLY ASN ILE THR ALA GLY LEU GLU LEU ILE ARG LYS SEQRES 17 A 419 THR LYS GLY GLU ALA ARG ALA PHE GLY LEU THR ILE PRO SEQRES 18 A 419 LEU VAL THR LYS ALA ASP GLY THR LYS PHE GLY LYS THR SEQRES 19 A 419 GLU SER GLY THR ILE TRP LEU ASP LYS GLU LYS THR SER SEQRES 20 A 419 PRO TYR GLU PHE TYR GLN PHE TRP ILE ASN THR ASP ASP SEQRES 21 A 419 ARG ASP VAL ILE ARG TYR LEU LYS TYR PHE THR PHE LEU SEQRES 22 A 419 SER LYS GLU GLU ILE GLU ALA LEU GLU GLN GLU LEU ARG SEQRES 23 A 419 GLU ALA PRO GLU LYS ARG ALA ALA GLN LYS THR LEU ALA SEQRES 24 A 419 GLU GLU VAL THR LYS LEU VAL HIS GLY GLU GLU ALA LEU SEQRES 25 A 419 ARG GLN ALA ILE ARG ILE SER GLU ALA LEU PHE SER GLY SEQRES 26 A 419 ASP ILE ALA ASN LEU THR ALA ALA GLU ILE GLU GLN GLY SEQRES 27 A 419 PHE LYS ASP VAL PRO SER PHE VAL HIS GLU GLY GLY ASP SEQRES 28 A 419 VAL PRO LEU VAL GLU LEU LEU VAL SER ALA GLY ILE SER SEQRES 29 A 419 PRO SER LYS ARG GLN ALA ARG GLU ASP ILE GLN ASN GLY SEQRES 30 A 419 ALA ILE TYR VAL ASN GLY GLU ARG LEU GLN ASP VAL GLY SEQRES 31 A 419 ALA ILE LEU THR ALA GLU HIS ARG LEU GLU GLY ARG PHE SEQRES 32 A 419 THR VAL ILE ARG ARG GLY LYS LYS LYS TYR TYR LEU ILE SEQRES 33 A 419 ARG TYR ALA FORMUL 2 HOH *110(H2 O) HELIX 1 H1 ASP A 2 ARG A 10 1 9 HELIX 2 H2 GLU A 19 GLU A 28 1 10 HELIX 3 H3 LEU A 49 GLN A 60 1 12 HELIX 4 H4 THR A 73 LEU A 75 5 3 HELIX 5 H5 LYS A 91 LEU A 105 1 15 HELIX 6 H6 TYR A 124 ILE A 127 1 4 HELIX 7 H7 VAL A 132 ASP A 138 1 7 HELIX 8 H GLY A 140 HIS A 142 5 3 HELIX 9 H8 VAL A 145 MET A 149 1 5 HELIX 10 H9 GLU A 152 GLN A 155 1 4 HELIX 11 H10 PHE A 164 GLU A 184 1 21 HELIX 12 H11 TRP A 196 LYS A 210 1 15 HELIX 13 H1* PRO A 248 ILE A 256 1 9 HELIX 14 H2* VAL A 263 PHE A 270 1 8 HELIX 15 H3* LYS A 275 GLU A 287 1 13 HELIX 16 H4* ALA A 293 VAL A 306 1 14 HELIX 17 H5* GLU A 309 ILE A 318 1 10 SHEET 1 S1 6 GLN A 15 THR A 16 0 SHEET 2 S1 6 PHE A 216 ILE A 220 -1 N THR A 219 O GLN A 15 SHEET 3 S1 6 ARG A 187 GLY A 192 1 O GLN A 189 N LEU A 218 SHEET 4 S1 6 THR A 32 PHE A 37 1 N TYR A 34 O LEU A 188 SHEET 5 S1 6 ARG A 64 VAL A 69 1 O ILE A 66 N CYS A 35 SHEET 6 S1 6 LYS A 119 ASN A 122 1 N LYS A 121 O ALA A 67 CRYST1 64.460 64.460 237.600 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015513 0.008957 0.000000 0.00000 SCALE2 0.000000 0.017913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004209 0.00000