HEADER LECTIN 01-MAR-07 2UU8 TITLE X-RAY STRUCTURE OF NI, CA CONCANAVALIN A AT ULTRA-HIGH RESOLUTION (0. TITLE 2 94A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONCANAVALIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CON A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823 KEYWDS LECTIN, CALCIUM, MANGANESE, METAL-BINDING, NI EXPDTA X-RAY DIFFRACTION AUTHOR H.U.AHMED,M.P.BLAKELEY,M.CIANCI,D.W.J.CRUICKSHANK,J.A.HUBBARD, AUTHOR 2 J.R.HELLIWELL REVDAT 6 13-DEC-23 2UU8 1 REMARK LINK REVDAT 5 22-MAY-19 2UU8 1 REMARK REVDAT 4 05-FEB-14 2UU8 1 REMARK REVDAT 3 18-DEC-13 2UU8 1 KEYWDS REMARK VERSN REVDAT 2 24-FEB-09 2UU8 1 VERSN REVDAT 1 31-JUL-07 2UU8 0 JRNL AUTH H.U.AHMED,M.P.BLAKELEY,M.CIANCI,D.W.J.CRUICKSHANK, JRNL AUTH 2 J.A.HUBBARD,J.R.HELLIWELL JRNL TITL THE DETERMINATION OF PROTONATION STATES IN PROTEINS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 906 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17642517 JRNL DOI 10.1107/S0907444907029976 REMARK 2 REMARK 2 RESOLUTION. 0.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.120 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.142 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 6827 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 136001 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.107 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.129 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 3.700 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 287 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2084.3 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1752.3 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 37 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 19691 REMARK 3 NUMBER OF RESTRAINTS : 24823 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 ANGLE DISTANCES (A) : 0.037 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.036 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.093 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.135 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.072 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.007 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.055 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.111 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2UU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1290030830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.67 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 136027 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.940 REMARK 200 RESOLUTION RANGE LOW (A) : 33.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5, SHELXL-97 REMARK 200 STARTING MODEL: PDB ENTRY 1NLS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.43350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.02450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.76950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.43350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.02450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.76950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.43350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.02450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.76950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.43350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.02450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 30.76950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 88.86700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 88.86700 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 86.04900 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 86.04900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 102 CD GLU A 102 OE2 0.069 REMARK 500 SER A 110 CB SER A 110 OG -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 MET A 42 CG - SD - CE ANGL. DEV. = -16.6 DEGREES REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 82 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 THR A 120 CB - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 THR A 120 N - CA - CB ANGL. DEV. = 14.1 DEGREES REMARK 500 HIS A 121 C - N - CA ANGL. DEV. = 29.7 DEGREES REMARK 500 LYS A 135 CB - CG - CD ANGL. DEV. = 19.5 DEGREES REMARK 500 LYS A 135 CG - CD - CE ANGL. DEV. = 18.2 DEGREES REMARK 500 LYS A 135 CD - CE - NZ ANGL. DEV. = 18.2 DEGREES REMARK 500 ASP A 136 CB - CG - OD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP A 136 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP A 151 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 151 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASN A 162 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 LYS A 200 CA - CB - CG ANGL. DEV. = 21.4 DEGREES REMARK 500 LYS A 200 CB - CG - CD ANGL. DEV. = 24.6 DEGREES REMARK 500 ASP A 218 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 38.14 -81.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 239 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 96.0 REMARK 620 3 ASP A 19 OD1 169.5 94.4 REMARK 620 4 HIS A 24 NE2 91.4 88.2 90.6 REMARK 620 5 HOH A1006 O 89.5 88.7 89.0 176.9 REMARK 620 6 HOH A1051 O 88.7 175.3 80.9 91.1 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 240 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 52.5 REMARK 620 3 TYR A 12 O 76.7 111.8 REMARK 620 4 ASN A 14 OD1 151.6 155.9 83.8 REMARK 620 5 ASP A 19 OD2 109.3 77.6 81.0 87.3 REMARK 620 6 HOH A1255 O 73.8 111.2 90.1 86.1 169.5 REMARK 620 7 HOH A1276 O 110.0 74.4 173.1 89.4 97.8 90.3 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 240 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1APN RELATED DB: PDB REMARK 900 MOL_ID: 1; MOLECULE: CONCANAVALIN A; CHAIN: A, B; SYNONYM: CON A; REMARK 900 OTHER_DETAILS: DEMETALLIZED, PH 5 REMARK 900 RELATED ID: 1BXH RELATED DB: PDB REMARK 900 CONCANAVALIN A COMPLEXED TO METHYL ALPHA1-2 MANNOBIOSIDE REMARK 900 RELATED ID: 1C57 RELATED DB: PDB REMARK 900 DIRECT DETERMINATION OF THE POSITIONS OF DEUTERIUM ATOMS OF BOUND REMARK 900 WATER IN CONCANAVALIN A BY NEUTRON LAUE CRYSTALLOGRAPHY REMARK 900 RELATED ID: 1CES RELATED DB: PDB REMARK 900 CRYSTALS OF DEMETALLIZED CONCANAVALIN A SOAKED WITH ZINC HAVE A REMARK 900 ZINC ION BOUND IN THE S1 SITE REMARK 900 RELATED ID: 1CJP RELATED DB: PDB REMARK 900 CONCANAVALIN A COMPLEX WITH 4'- METHYLUMBELLIFERYL-ALPHA- D- REMARK 900 GLUCOPYRANOSIDE REMARK 900 RELATED ID: 1CN1 RELATED DB: PDB REMARK 900 CONCANAVALIN A (DEMETALLIZED) REMARK 900 RELATED ID: 1CON RELATED DB: PDB REMARK 900 CONCANAVALIN A (CADMIUM SUBSTITUTED FOR MANGANESE) REMARK 900 RELATED ID: 1CVN RELATED DB: PDB REMARK 900 CONCANAVALIN A COMPLEXED TO TRIMANNOSIDE REMARK 900 RELATED ID: 1DQ0 RELATED DB: PDB REMARK 900 LOCKED, METAL-FREE CONCANAVALIN A, A MINOR SPECIES IN SOLUTION REMARK 900 RELATED ID: 1DQ1 RELATED DB: PDB REMARK 900 CALCIUM;CALCIUM CONCANAVALIN A REMARK 900 RELATED ID: 1DQ2 RELATED DB: PDB REMARK 900 UNLOCKED METAL-FREE CONCANAVALIN A REMARK 900 RELATED ID: 1DQ4 RELATED DB: PDB REMARK 900 A TRANSIENT UNLOCKED CONCANAVALIN A STRUCTURE WITH MN2+ BOUND IN REMARK 900 THE TRANSITION METAL ION BINDING SITE S1 AND AN EMPTY CALCIUM REMARK 900 BINDING SITE S2 REMARK 900 RELATED ID: 1DQ5 RELATED DB: PDB REMARK 900 MANGANESE;MANGANESE CONCANAVALIN A AT PH 5. 0 REMARK 900 RELATED ID: 1DQ6 RELATED DB: PDB REMARK 900 MANGANESE;MANGANESE CONCANAVALIN A AT PH 7. 0 REMARK 900 RELATED ID: 1ENQ RELATED DB: PDB REMARK 900 CO-CRYSTALS OF DEMETALLIZED CONCANAVALIN A WITH ZINC HAVING A ZINC REMARK 900 ION BOUND IN THE S1 SITE REMARK 900 RELATED ID: 1ENR RELATED DB: PDB REMARK 900 CO-CRYSTALS OF DEMETALLIZED CONCANAVALIN A WITH ZINC AND CALCIUM REMARK 900 HAVING A ZINC ION BOUND IN THE S1 SITE AND A CALCIUM ION BOUND IN REMARK 900 THE S2 SITE REMARK 900 RELATED ID: 1ENS RELATED DB: PDB REMARK 900 CRYSTALS OF DEMETALLIZED CONCANAVALIN A SOAKED WITH COBALT HAVING A REMARK 900 COBALT ION BOUND IN THE S1 SITE REMARK 900 RELATED ID: 1GIC RELATED DB: PDB REMARK 900 CONCANAVALIN A COMPLEXED WITH METHYL ALPHA-D -GLUCOPYRANOSIDE REMARK 900 RELATED ID: 1GKB RELATED DB: PDB REMARK 900 CONCANAVALIN A, NEW CRYSTAL FORM REMARK 900 RELATED ID: 1I3H RELATED DB: PDB REMARK 900 CONCANAVALIN A-DIMANNOSE STRUCTURE REMARK 900 RELATED ID: 1JBC RELATED DB: PDB REMARK 900 CONCANAVALIN A REMARK 900 RELATED ID: 1JN2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MESO-TETRASULPHONATOPHENYL PORPHYRINCOMPLEXED REMARK 900 WITH CONCANAVALIN A REMARK 900 RELATED ID: 1JOJ RELATED DB: PDB REMARK 900 CONCANAVALIN A-HEXAPEPTIDE COMPLEX REMARK 900 RELATED ID: 1JUI RELATED DB: PDB REMARK 900 CONCANAVALIN A-CARBOHYDRATE MIMICKING 10-MER PEPTIDE COMPLEX REMARK 900 RELATED ID: 1JW6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF CONCANAVALIN A ANDHEXAPEPTIDE REMARK 900 RELATED ID: 1JYC RELATED DB: PDB REMARK 900 CONCANAVALIN A/15-MER PEPTIDE COMPLEX REMARK 900 RELATED ID: 1JYI RELATED DB: PDB REMARK 900 CONCANAVALIN A/12-MER PEPTIDE COMPLEX REMARK 900 RELATED ID: 1NLS RELATED DB: PDB REMARK 900 CONCANAVALIN A AND ITS BOUND SOLVENT AT 0 .94A RESOLUTION REMARK 900 RELATED ID: 1NXD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MNMN CONCANAVALIN A REMARK 900 RELATED ID: 1ONA RELATED DB: PDB REMARK 900 CO-CRYSTALS OF CONCANAVALIN A WITH METHYL- 3,6-DI-O- (ALPHA-D- REMARK 900 MANNOPYRANOSYL)-ALPHA- D-MANNOPYRANOSIDE REMARK 900 RELATED ID: 1QNY RELATED DB: PDB REMARK 900 X-RAY REFINEMENT OF D2O SOAKED CRYSTAL OF CONCANAVALIN A REMARK 900 RELATED ID: 1SCR RELATED DB: PDB REMARK 900 CONCANAVALIN A (NICKEL SUBSTITUTED FOR MANGANESE) REMARK 900 RELATED ID: 1SCS RELATED DB: PDB REMARK 900 CONCANAVALIN A (COBALT SUBSTITUTED FOR MANGANESE) REMARK 900 RELATED ID: 1TEI RELATED DB: PDB REMARK 900 STRUCTURE OF CONCANAVALIN A COMPLEXED TO BETA-D-GLCNAC (1,2)ALPHA-D- REMARK 900 MAN-(1,6)[ BETA-D-GLCNAC(1,2)ALPHA-D-MAN (1,6)] ALPHA-D-MAN REMARK 900 RELATED ID: 1VAL RELATED DB: PDB REMARK 900 CONCANAVALIN A COMPLEX WITH 4'-NITROPHENYL- ALPHA-D- GLUCOPYRANOSIDE REMARK 900 RELATED ID: 1VAM RELATED DB: PDB REMARK 900 CONCANAVALIN A COMPLEX WITH 4'-NITROPHENYL- ALPHA-D- MANNOPYRANOSIDE REMARK 900 RELATED ID: 1VLN RELATED DB: PDB REMARK 900 A TRICLINIC CRYSTAL FORM OF THE LECTIN CONCANAVALIN A REMARK 900 RELATED ID: 1XQN RELATED DB: PDB REMARK 900 THE 15K NEUTRON STRUCTURE OF SACCHARIDE-FREE CONCANAVALIN A REMARK 900 RELATED ID: 2CNA RELATED DB: PDB REMARK 900 CONCANAVALIN A REMARK 900 RELATED ID: 2CTV RELATED DB: PDB REMARK 900 CONCANAVALIN A (NATIVE) REMARK 900 RELATED ID: 2ENR RELATED DB: PDB REMARK 900 CO-CRYSTALS OF DEMETALLIZED CONCANAVALIN A WITH CADMIUM HAVING A REMARK 900 CADMIUM ION BOUND IN BOTH THE S1 SITE AND THE S2 SITE REMARK 900 RELATED ID: 3CNA RELATED DB: PDB REMARK 900 CONCANAVALIN A REMARK 900 RELATED ID: 3ENR RELATED DB: PDB REMARK 900 ZINC-CALCIUM CONCANAVALIN A AT PH 6.15 REMARK 900 RELATED ID: 5CNA RELATED DB: PDB REMARK 900 CONCANAVALIN A COMPLEXED WITH ALPHA-METHYL-D -MANNOPYRANOSIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE MATURE CHAIN IS FORMED THROUGH A POSTTRANSLATIONAL REMARK 999 MODIFICATION AFTER THE REMOVAL OF THE SIGNAL SEQUENCE. REMARK 999 THERE IS A CLEAVAGE AFTER ASN AT POSITIONS 148, 163, REMARK 999 AND 281 IS FOLLOWED BY TRANSPOSITION AND LIGATION OF REMARK 999 RESIDUES 164-281 AND 30-148.A NEW PEPTIDE BOND IS FORMED REMARK 999 BETWEEN THE RESIDUES 164-281 AND 30-140. DBREF 2UU8 A 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 2UU8 A 119 237 UNP P02866 CONA_CANEN 30 148 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN HET NI A 239 1 HET CA A 240 1 HETNAM NI NICKEL (II) ION HETNAM CA CALCIUM ION FORMUL 2 NI NI 2+ FORMUL 3 CA CA 2+ FORMUL 4 HOH *287(H2 O) HELIX 1 1 ASN A 14 GLY A 18 5 5 HELIX 2 2 ASP A 80 VAL A 84 5 5 HELIX 3 3 THR A 150 GLY A 152 5 3 HELIX 4 4 THR A 226 LEU A 230 5 5 SHEET 1 AA 6 LYS A 36 LYS A 39 0 SHEET 2 AA 6 HIS A 24 ILE A 29 -1 O ILE A 25 N ALA A 38 SHEET 3 AA 6 ILE A 4 ASP A 10 -1 O ALA A 6 N ASP A 28 SHEET 4 AA 6 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 AA 6 TRP A 88 SER A 96 -1 O ARG A 90 N SER A 215 SHEET 6 AA 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 AB 7 LYS A 36 LYS A 39 0 SHEET 2 AB 7 HIS A 24 ILE A 29 -1 O ILE A 25 N ALA A 38 SHEET 3 AB 7 ILE A 4 ASP A 10 -1 O ALA A 6 N ASP A 28 SHEET 4 AB 7 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 AB 7 TRP A 88 SER A 96 -1 O ARG A 90 N SER A 215 SHEET 6 AB 7 VAL A 170 PHE A 175 -1 O GLY A 171 N ALA A 95 SHEET 7 AB 7 LEU A 140 GLY A 144 -1 O ILE A 141 N LEU A 174 SHEET 1 AC 7 ALA A 73 ASP A 78 0 SHEET 2 AC 7 ARG A 60 SER A 66 -1 O LEU A 61 N TYR A 77 SHEET 3 AC 7 VAL A 47 ASN A 55 -1 O THR A 49 N SER A 66 SHEET 4 AC 7 ALA A 186 LEU A 198 -1 O PHE A 191 N TYR A 54 SHEET 5 AC 7 THR A 105 SER A 117 -1 O THR A 105 N LEU A 198 SHEET 6 AC 7 LEU A 154 GLU A 155 -1 O LEU A 154 N ILE A 106 SHEET 7 AC 7 THR A 147 THR A 148 -1 O THR A 147 N GLU A 155 SHEET 1 AD 6 ALA A 73 ASP A 78 0 SHEET 2 AD 6 ARG A 60 SER A 66 -1 O LEU A 61 N TYR A 77 SHEET 3 AD 6 VAL A 47 ASN A 55 -1 O THR A 49 N SER A 66 SHEET 4 AD 6 ALA A 186 LEU A 198 -1 O PHE A 191 N TYR A 54 SHEET 5 AD 6 THR A 105 SER A 117 -1 O THR A 105 N LEU A 198 SHEET 6 AD 6 THR A 123 PHE A 130 -1 O ASN A 124 N LEU A 115 LINK OE2 GLU A 8 NI NI A 239 1555 1555 2.06 LINK OD2 ASP A 10 NI NI A 239 1555 1555 2.06 LINK OD1 ASP A 10 CA CA A 240 1555 1555 2.45 LINK OD2 ASP A 10 CA CA A 240 1555 1555 2.50 LINK O TYR A 12 CA CA A 240 1555 1555 2.37 LINK OD1 ASN A 14 CA CA A 240 1555 1555 2.33 LINK OD1 ASP A 19 NI NI A 239 1555 1555 2.09 LINK OD2 ASP A 19 CA CA A 240 1555 1555 2.39 LINK NE2 HIS A 24 NI NI A 239 1555 1555 2.05 LINK NI NI A 239 O HOH A1006 1555 1555 2.10 LINK NI NI A 239 O HOH A1051 1555 1555 2.04 LINK CA CA A 240 O HOH A1255 1555 1555 2.39 LINK CA CA A 240 O HOH A1276 1555 1555 2.40 CISPEP 1 THR A 120 HIS A 121 0 -14.45 CISPEP 2 HIS A 121 GLU A 122 0 -20.53 CISPEP 3 ALA A 207 ASP A 208 0 1.63 SITE 1 AC1 6 GLU A 8 ASP A 10 ASP A 19 HIS A 24 SITE 2 AC1 6 HOH A1006 HOH A1051 SITE 1 AC2 6 ASP A 10 TYR A 12 ASN A 14 ASP A 19 SITE 2 AC2 6 HOH A1255 HOH A1276 CRYST1 88.867 86.049 61.539 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011253 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016250 0.00000