HEADER SUGAR-BINDING PROTEIN 10-MAR-07 2UVG TITLE STRUCTURE OF A PERIPLASMIC OLIGOGALACTURONIDE BINDING TITLE 2 PROTEIN FROM YERSINIA ENTEROCOLITICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TYPE PERIPLASMIC SUGAR-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TOGB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS YERSINIA ENTEROCOLITICA, PERIPLASMIC BINDING PROTEIN, TOGB, KEYWDS 2 OLIGALACTURONIDE, PECTIN DEGRADATION, SUGAR-BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.W.ABBOTT,A.B.BORASTON REVDAT 2 24-FEB-09 2UVG 1 VERSN REVDAT 1 22-MAY-07 2UVG 0 JRNL AUTH D.W.ABBOTT,A.B.BORASTON JRNL TITL SPECIFIC RECOGNITION OF SATURATED AND 4,5- JRNL TITL 2 UNSATURATED HEXURONATE SUGARS BY A PERIPLASMIC JRNL TITL 3 BINDING PROTEIN INVOLVED IN PECTIN CATABOLISM. JRNL REF J.MOL.BIOL. V. 369 759 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17451747 JRNL DOI 10.1016/J.JMB.2007.03.045 REMARK 2 REMARK 2 RESOLUTION. 2.2 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 19725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1075 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1439 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3225 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.359 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.257 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.012 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3301 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4473 ; 1.933 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ;11.253 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;38.415 ;24.934 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;17.282 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;26.845 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 472 ; 0.192 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2518 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1862 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2240 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 321 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.561 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.350 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2067 ; 1.074 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3219 ; 1.636 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1473 ; 2.873 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1254 ; 4.129 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2UVG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-07. REMARK 100 THE PDBE ID CODE IS EBI-31865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.580 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.98900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.88600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.76150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.88600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.98900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.76150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 HIS A 25 REMARK 465 MET A 26 REMARK 465 GLU A 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 171 OE1 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 ILE A 259 CA REMARK 470 MET A 268 CE REMARK 470 ILE A 273 CG2 REMARK 470 ALA A 338 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 213 - O HOH A 2212 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 CD ARG A 356 NH2 ARG A 430 1655 1.32 REMARK 500 NE ARG A 356 NH2 ARG A 430 1655 0.31 REMARK 500 NE ARG A 356 CZ ARG A 430 1655 1.47 REMARK 500 CZ ARG A 356 NE ARG A 430 1655 1.18 REMARK 500 CZ ARG A 356 NH2 ARG A 430 1655 1.23 REMARK 500 CZ ARG A 356 NH1 ARG A 430 1655 1.59 REMARK 500 NH1 ARG A 356 NE ARG A 430 1655 2.04 REMARK 500 NH1 ARG A 356 NH2 ARG A 430 1655 2.02 REMARK 500 NH1 ARG A 356 CZ ARG A 430 1655 1.05 REMARK 500 NH2 ARG A 356 NE ARG A 430 1655 0.31 REMARK 500 NH2 ARG A 356 CD ARG A 430 1655 1.57 REMARK 500 NH2 ARG A 356 CZ ARG A 430 1655 1.53 REMARK 500 CD ARG A 430 NH2 ARG A 356 1455 1.57 REMARK 500 NE ARG A 430 CZ ARG A 356 1455 1.18 REMARK 500 NE ARG A 430 NH2 ARG A 356 1455 0.31 REMARK 500 NE ARG A 430 NH1 ARG A 356 1455 2.04 REMARK 500 CZ ARG A 430 NE ARG A 356 1455 1.47 REMARK 500 CZ ARG A 430 NH2 ARG A 356 1455 1.53 REMARK 500 CZ ARG A 430 NH1 ARG A 356 1455 1.05 REMARK 500 NH1 ARG A 430 CZ ARG A 356 1455 1.59 REMARK 500 NH2 ARG A 430 CD ARG A 356 1455 1.32 REMARK 500 NH2 ARG A 430 NE ARG A 356 1455 0.31 REMARK 500 NH2 ARG A 430 CZ ARG A 356 1455 1.23 REMARK 500 NH2 ARG A 430 NH1 ARG A 356 1455 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 334 CG GLU A 334 CD 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 100 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 309 CG - SD - CE ANGL. DEV. = 10.1 DEGREES REMARK 500 SER A 315 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 63 72.87 -119.37 REMARK 500 LYS A 249 33.79 -85.76 REMARK 500 ASP A 363 -40.67 118.78 REMARK 500 LYS A 380 -40.59 -141.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 247 GLY A 248 -121.38 REMARK 500 ASP A 365 PRO A 366 -137.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER A 250 22.9 L L OUTSIDE RANGE REMARK 500 SER A 315 -11.4 L D OUTSIDE RANGE REMARK 500 LYS A 362 21.8 L L OUTSIDE RANGE REMARK 500 ILE A 400 23.9 L L OUTSIDE RANGE REMARK 500 ILE A 403 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UVH RELATED DB: PDB REMARK 900 STRUCTURE OF A PERIPLASMIC OLIGOGALACTURONIDE REMARK 900 BINDING PROTEIN FROM YERSINIA ENTEROCOLITICA REMARK 900 IN COMPLEX WITH SATURATED DIGALACTURONIC ACID REMARK 900 RELATED ID: 2UVI RELATED DB: PDB REMARK 900 STRUCTURE OF A PERIPLASMIC OLIGOGALACTURONIDE REMARK 900 BINDING PROTEIN FROM YERSINIA ENTEROCOLITICA REMARK 900 IN COMPLEX WITH 4,5-UNSATURATED REMARK 900 DIGALACTURONIC ACID REMARK 900 RELATED ID: 2UVJ RELATED DB: PDB REMARK 900 STRUCTURE OF A PERIPLASMIC OLIGOGALACTURONIDE REMARK 900 BINDING PROTEIN FROM YERSINIA ENTEROCOLITICA REMARK 900 IN COMPLEX WITH TRIGALACTURONIC ACID DBREF 2UVG A 23 430 PDB 2UVG 2UVG 23 430 SEQRES 1 A 408 GLY SER HIS MET GLU VAL ASN LEU ARG MET SER TRP TRP SEQRES 2 A 408 GLY GLY ASN GLY ARG HIS GLU VAL THR LEU LYS ALA LEU SEQRES 3 A 408 GLU GLU PHE HIS LYS GLU HIS PRO ASN ILE ASN VAL LYS SEQRES 4 A 408 ALA GLU TYR THR GLY TRP ASP GLY HIS LEU SER ARG LEU SEQRES 5 A 408 THR THR GLN ILE ALA GLY GLY THR GLU PRO ASP VAL MET SEQRES 6 A 408 GLN THR ASN TRP ASN TRP LEU PRO ILE PHE SER LYS ASP SEQRES 7 A 408 GLY THR GLY PHE TYR ASN LEU PHE SER VAL LYS GLU GLN SEQRES 8 A 408 LEU ASP LEU ALA GLN PHE ASP PRO LYS GLU LEU GLN GLN SEQRES 9 A 408 THR THR VAL ASN GLY LYS LEU ASN GLY ILE PRO ILE SER SEQRES 10 A 408 VAL THR ALA ARG ILE PHE TYR PHE ASN ASP ALA THR TRP SEQRES 11 A 408 ALA LYS ALA GLY LEU GLU TYR PRO LYS THR TRP ASP GLU SEQRES 12 A 408 LEU LEU ALA ALA GLY GLN VAL PHE LYS GLU LYS LEU GLY SEQRES 13 A 408 ASP GLN TYR TYR PRO VAL VAL LEU GLU HIS GLN ASP THR SEQRES 14 A 408 LEU ALA LEU ILE ARG SER TYR MET THR GLN LYS TYR ASN SEQRES 15 A 408 ILE PRO THR ILE ASP GLU ALA ASN LYS LYS PHE ALA TYR SEQRES 16 A 408 SER PRO GLU GLN TRP VAL GLU PHE PHE THR MET TYR LYS SEQRES 17 A 408 THR MET VAL ASP ASN HIS VAL MET PRO SER THR LYS TYR SEQRES 18 A 408 TYR ALA SER PHE GLY LYS SER ASN MET TYR GLU MET LYS SEQRES 19 A 408 PRO TRP ILE ASN GLY GLU TRP ALA GLY THR TYR MET TRP SEQRES 20 A 408 ASN SER THR ILE THR LYS TYR SER ASP ASN LEU THR LYS SEQRES 21 A 408 PRO ALA LYS LEU VAL LEU GLY PRO TYR PRO MET LEU PRO SEQRES 22 A 408 GLY ALA LYS ASP ALA GLY LEU PHE PHE LYS PRO ALA GLN SEQRES 23 A 408 MET LEU SER ILE GLY LYS SER THR LYS HIS PRO GLN GLU SEQRES 24 A 408 SER ALA MET LEU ILE ASN PHE LEU LEU ASN SER LYS GLU SEQRES 25 A 408 GLY VAL GLU ALA LEU GLY LEU GLU ARG GLY VAL PRO LEU SEQRES 26 A 408 SER ALA THR ALA VAL THR GLN LEU ARG ALA SER GLY VAL SEQRES 27 A 408 ILE LYS ASP GLU ASP PRO SER VAL ALA GLY LEU ASN MET SEQRES 28 A 408 ALA LEU GLU LEU PRO HIS LYS MET THR THR SER PRO TYR SEQRES 29 A 408 PHE ASP ASP PRO GLN ILE VAL SER LEU PHE GLY ASP ALA SEQRES 30 A 408 ILE GLN TYR ILE ASP TYR GLY GLN LYS THR VAL GLN GLU SEQRES 31 A 408 THR ALA GLU TYR PHE ASN LYS GLN GLY ASP ARG ILE LEU SEQRES 32 A 408 LYS ARG ALA MET ARG FORMUL 2 HOH *376(H2 O1) HELIX 1 1 GLY A 37 HIS A 55 1 19 HELIX 2 2 GLY A 69 GLY A 80 1 12 HELIX 3 3 ASN A 92 SER A 98 1 7 HELIX 4 4 ASN A 106 LYS A 111 5 6 HELIX 5 5 ASP A 115 PHE A 119 5 5 HELIX 6 6 ASP A 120 THR A 127 1 8 HELIX 7 7 ASP A 149 GLY A 156 1 8 HELIX 8 8 THR A 162 LEU A 177 1 16 HELIX 9 9 GLU A 187 ASN A 204 1 18 HELIX 10 10 SER A 218 ASN A 235 1 18 HELIX 11 11 SER A 240 SER A 246 1 7 HELIX 12 12 ASN A 251 MET A 255 5 5 HELIX 13 13 THR A 272 ASN A 279 1 8 HELIX 14 14 HIS A 318 SER A 332 1 15 HELIX 15 15 SER A 332 GLU A 337 1 6 HELIX 16 16 SER A 348 SER A 358 1 11 HELIX 17 17 ASP A 365 LEU A 377 1 13 HELIX 18 18 SER A 384 ASP A 388 5 5 HELIX 19 19 ASP A 389 TYR A 405 1 17 HELIX 20 20 THR A 409 MET A 429 1 21 SHEET 1 AA 6 ASN A 59 THR A 65 0 SHEET 2 AA 6 ASN A 29 TRP A 35 1 O LEU A 30 N LYS A 61 SHEET 3 AA 6 VAL A 86 THR A 89 1 O VAL A 86 N SER A 33 SHEET 4 AA 6 PHE A 304 ILE A 312 -1 O MET A 309 N THR A 89 SHEET 5 AA 6 ILE A 136 ASN A 148 -1 O ILE A 136 N LEU A 310 SHEET 6 AA 6 GLY A 265 TRP A 269 -1 O THR A 266 N TYR A 146 SHEET 1 AB 6 ASN A 59 THR A 65 0 SHEET 2 AB 6 ASN A 29 TRP A 35 1 O LEU A 30 N LYS A 61 SHEET 3 AB 6 VAL A 86 THR A 89 1 O VAL A 86 N SER A 33 SHEET 4 AB 6 PHE A 304 ILE A 312 -1 O MET A 309 N THR A 89 SHEET 5 AB 6 ILE A 136 ASN A 148 -1 O ILE A 136 N LEU A 310 SHEET 6 AB 6 LEU A 286 LEU A 288 -1 O VAL A 287 N PHE A 147 SHEET 1 AC 2 THR A 128 VAL A 129 0 SHEET 2 AC 2 LYS A 132 LEU A 133 -1 O LYS A 132 N VAL A 129 SHEET 1 AD 2 ILE A 208 ASP A 209 0 SHEET 2 AD 2 LYS A 214 PHE A 215 -1 O LYS A 214 N ASP A 209 CISPEP 1 LYS A 282 PRO A 283 0 10.57 CRYST1 43.978 79.523 117.772 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008491 0.00000