HEADER HYDROLASE 19-MAR-07 2UWA TITLE CRYSTAL STRUCTURE OF THE NASTURTIUM SEEDLING XYLOGLUCANASE ISOFORM TITLE 2 NXG1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 25-295; COMPND 5 SYNONYM: XYLOGLUCAN HYDROLASE; COMPND 6 EC: 3.2.1.151, 3.2.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TROPAEOLUM MAJUS; SOURCE 3 ORGANISM_COMMON: NASTURTIUM; SOURCE 4 ORGANISM_TAXID: 4020; SOURCE 5 TISSUE: SEEDLING; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEM T EASY; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC9-NXG1 KEYWDS GLYCOSIDE HYDROLASE, XYLOGLUCAN-ENDO-TRANSFERASE, HYDROLASE, KEYWDS 2 GLYCOSIDASE, FAMILY GH16, TROPAEOLUM MAJUS XYLOGLUCANASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BAUMANN,J.EKLOF,G.MICHEL,A.KALLASA,T.T.TEERI,H.BRUMER,M.CZJZEK REVDAT 4 13-DEC-23 2UWA 1 REMARK REVDAT 3 24-FEB-09 2UWA 1 VERSN REVDAT 2 14-AUG-07 2UWA 1 JRNL REVDAT 1 26-JUN-07 2UWA 0 JRNL AUTH M.J.BAUMANN,J.EKLOF,G.MICHEL,A.KALLASA,T.T.TEERI,M.CZJZEK, JRNL AUTH 2 H.BRUMER JRNL TITL STRUCTURAL EVIDENCE FOR THE EVOLUTION OF XYLOGLUCANASE JRNL TITL 2 ACTIVITY FROM XYLOGLUCAN ENDO-TRANSGLYCOSYLASES: BIOLOGICAL JRNL TITL 3 IMPLICATIONS FOR CELL WALL METABOLISM. JRNL REF PLANT CELL V. 19 1947 2007 JRNL REFN ISSN 1040-4651 JRNL PMID 17557806 JRNL DOI 10.1105/TPC.107.051391 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 83243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6115 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 355 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6639 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 443 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.644 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6887 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5727 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9395 ; 1.250 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13379 ; 0.768 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 816 ; 6.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;34.722 ;23.879 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 999 ;13.194 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;13.897 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 936 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7776 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1275 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5711 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3330 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3702 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 442 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.105 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 114 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 53 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5251 ; 0.649 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6630 ; 0.748 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3520 ; 1.326 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2765 ; 1.932 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 271 5 REMARK 3 1 B 1 B 271 5 REMARK 3 1 C 1 C 271 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1583 ; 0.13 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1583 ; 0.22 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1583 ; 0.17 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 2483 ; 0.43 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 2483 ; 0.48 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 2483 ; 0.49 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1583 ; 0.63 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1583 ; 0.84 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1583 ; 0.49 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2483 ; 0.94 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 2483 ; 1.07 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 2483 ; 0.82 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2UWA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1290031955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1UN1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE SOLUTIONS FOR THE OPTIMIZED REMARK 280 CONDITIONS OF NXG1 CONTAINED 15-20% OF POLYETHYLENE GLYCOL (PEG) REMARK 280 20000 AND 100 MM HEPES BUFFER AT PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.02367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.04733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 230 O SER C 232 2.15 REMARK 500 O LYS A 250 O HOH A 2152 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 91 69.14 -153.53 REMARK 500 GLU A 117 53.91 39.98 REMARK 500 TYR A 122 -67.79 -127.18 REMARK 500 TRP A 190 -12.63 -143.73 REMARK 500 GLN A 236 151.70 68.50 REMARK 500 SER B 47 153.49 179.94 REMARK 500 LYS B 91 60.29 -155.19 REMARK 500 GLU B 117 55.03 39.35 REMARK 500 ASP B 121 -84.03 -94.17 REMARK 500 TRP B 190 -18.61 -144.47 REMARK 500 LYS C 91 67.79 -152.29 REMARK 500 ASP C 121 -62.94 -100.22 REMARK 500 TYR C 122 -80.26 -110.25 REMARK 500 TRP C 190 -17.52 -143.93 REMARK 500 GLN C 204 127.86 -18.64 REMARK 500 GLN C 236 148.85 70.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UWB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NASTURTIUM SEEDLING MUTANT XYLOGLUCANASE REMARK 900 ISOFORM NXG1-DELTA-YNIIG REMARK 900 RELATED ID: 2UWC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NASTURTIUM XYLOGLUCAN HYDROLASE ISOFORM NXG2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST THREE RESIDUES (CHAIN K, RESIDUES AYV) ARE DUE REMARK 999 TO THE CLONING CONSTRUCTION FOR HETEROLOGOUS EXPRESSION DBREF 2UWA A -2 0 PDB 2UWA 2UWA -2 0 DBREF 2UWA A 1 271 UNP Q07524 Q07524_TROMA 25 295 DBREF 2UWA B -2 0 PDB 2UWA 2UWA -2 0 DBREF 2UWA B 1 271 UNP Q07524 Q07524_TROMA 25 295 DBREF 2UWA C -2 0 PDB 2UWA 2UWA -2 0 DBREF 2UWA C 1 271 UNP Q07524 Q07524_TROMA 25 295 SEQRES 1 A 274 ALA TYR VAL GLN GLY PRO PRO SER PRO GLY TYR TYR PRO SEQRES 2 A 274 SER SER GLN ILE THR SER LEU GLY PHE ASP GLN GLY TYR SEQRES 3 A 274 THR ASN LEU TRP GLY PRO GLN HIS GLN ARG VAL ASP GLN SEQRES 4 A 274 GLY SER LEU THR ILE TRP LEU ASP SER THR SER GLY SER SEQRES 5 A 274 GLY PHE LYS SER ILE ASN ARG TYR ARG SER GLY TYR PHE SEQRES 6 A 274 GLY ALA ASN ILE LYS LEU GLN SER GLY TYR THR ALA GLY SEQRES 7 A 274 VAL ILE THR SER PHE TYR LEU SER ASN ASN GLN ASP TYR SEQRES 8 A 274 PRO GLY LYS HIS ASP GLU ILE ASP ILE GLU PHE LEU GLY SEQRES 9 A 274 THR ILE PRO GLY LYS PRO TYR THR LEU GLN THR ASN VAL SEQRES 10 A 274 PHE ILE GLU GLY SER GLY ASP TYR ASN ILE ILE GLY ARG SEQRES 11 A 274 GLU MET ARG ILE HIS LEU TRP PHE ASP PRO THR GLN ASP SEQRES 12 A 274 TYR HIS ASN TYR ALA ILE TYR TRP THR PRO SER GLU ILE SEQRES 13 A 274 ILE PHE PHE VAL ASP ASP VAL PRO ILE ARG ARG TYR PRO SEQRES 14 A 274 ARG LYS SER ASP ALA THR PHE PRO LEU ARG PRO LEU TRP SEQRES 15 A 274 VAL TYR GLY SER VAL TRP ASP ALA SER SER TRP ALA THR SEQRES 16 A 274 GLU ASN GLY LYS TYR LYS ALA ASP TYR ARG TYR GLN PRO SEQRES 17 A 274 PHE VAL GLY LYS TYR GLU ASP PHE LYS LEU GLY SER CYS SEQRES 18 A 274 THR VAL GLU ALA ALA SER SER CYS ASN PRO ALA SER VAL SEQRES 19 A 274 SER PRO TYR GLY GLN LEU SER GLN GLN GLN VAL ALA ALA SEQRES 20 A 274 MET GLU TRP VAL GLN LYS ASN TYR MET VAL TYR ASN TYR SEQRES 21 A 274 CYS ASP ASP PRO THR ARG ASP HIS THR LEU THR PRO GLU SEQRES 22 A 274 CYS SEQRES 1 B 274 ALA TYR VAL GLN GLY PRO PRO SER PRO GLY TYR TYR PRO SEQRES 2 B 274 SER SER GLN ILE THR SER LEU GLY PHE ASP GLN GLY TYR SEQRES 3 B 274 THR ASN LEU TRP GLY PRO GLN HIS GLN ARG VAL ASP GLN SEQRES 4 B 274 GLY SER LEU THR ILE TRP LEU ASP SER THR SER GLY SER SEQRES 5 B 274 GLY PHE LYS SER ILE ASN ARG TYR ARG SER GLY TYR PHE SEQRES 6 B 274 GLY ALA ASN ILE LYS LEU GLN SER GLY TYR THR ALA GLY SEQRES 7 B 274 VAL ILE THR SER PHE TYR LEU SER ASN ASN GLN ASP TYR SEQRES 8 B 274 PRO GLY LYS HIS ASP GLU ILE ASP ILE GLU PHE LEU GLY SEQRES 9 B 274 THR ILE PRO GLY LYS PRO TYR THR LEU GLN THR ASN VAL SEQRES 10 B 274 PHE ILE GLU GLY SER GLY ASP TYR ASN ILE ILE GLY ARG SEQRES 11 B 274 GLU MET ARG ILE HIS LEU TRP PHE ASP PRO THR GLN ASP SEQRES 12 B 274 TYR HIS ASN TYR ALA ILE TYR TRP THR PRO SER GLU ILE SEQRES 13 B 274 ILE PHE PHE VAL ASP ASP VAL PRO ILE ARG ARG TYR PRO SEQRES 14 B 274 ARG LYS SER ASP ALA THR PHE PRO LEU ARG PRO LEU TRP SEQRES 15 B 274 VAL TYR GLY SER VAL TRP ASP ALA SER SER TRP ALA THR SEQRES 16 B 274 GLU ASN GLY LYS TYR LYS ALA ASP TYR ARG TYR GLN PRO SEQRES 17 B 274 PHE VAL GLY LYS TYR GLU ASP PHE LYS LEU GLY SER CYS SEQRES 18 B 274 THR VAL GLU ALA ALA SER SER CYS ASN PRO ALA SER VAL SEQRES 19 B 274 SER PRO TYR GLY GLN LEU SER GLN GLN GLN VAL ALA ALA SEQRES 20 B 274 MET GLU TRP VAL GLN LYS ASN TYR MET VAL TYR ASN TYR SEQRES 21 B 274 CYS ASP ASP PRO THR ARG ASP HIS THR LEU THR PRO GLU SEQRES 22 B 274 CYS SEQRES 1 C 274 ALA TYR VAL GLN GLY PRO PRO SER PRO GLY TYR TYR PRO SEQRES 2 C 274 SER SER GLN ILE THR SER LEU GLY PHE ASP GLN GLY TYR SEQRES 3 C 274 THR ASN LEU TRP GLY PRO GLN HIS GLN ARG VAL ASP GLN SEQRES 4 C 274 GLY SER LEU THR ILE TRP LEU ASP SER THR SER GLY SER SEQRES 5 C 274 GLY PHE LYS SER ILE ASN ARG TYR ARG SER GLY TYR PHE SEQRES 6 C 274 GLY ALA ASN ILE LYS LEU GLN SER GLY TYR THR ALA GLY SEQRES 7 C 274 VAL ILE THR SER PHE TYR LEU SER ASN ASN GLN ASP TYR SEQRES 8 C 274 PRO GLY LYS HIS ASP GLU ILE ASP ILE GLU PHE LEU GLY SEQRES 9 C 274 THR ILE PRO GLY LYS PRO TYR THR LEU GLN THR ASN VAL SEQRES 10 C 274 PHE ILE GLU GLY SER GLY ASP TYR ASN ILE ILE GLY ARG SEQRES 11 C 274 GLU MET ARG ILE HIS LEU TRP PHE ASP PRO THR GLN ASP SEQRES 12 C 274 TYR HIS ASN TYR ALA ILE TYR TRP THR PRO SER GLU ILE SEQRES 13 C 274 ILE PHE PHE VAL ASP ASP VAL PRO ILE ARG ARG TYR PRO SEQRES 14 C 274 ARG LYS SER ASP ALA THR PHE PRO LEU ARG PRO LEU TRP SEQRES 15 C 274 VAL TYR GLY SER VAL TRP ASP ALA SER SER TRP ALA THR SEQRES 16 C 274 GLU ASN GLY LYS TYR LYS ALA ASP TYR ARG TYR GLN PRO SEQRES 17 C 274 PHE VAL GLY LYS TYR GLU ASP PHE LYS LEU GLY SER CYS SEQRES 18 C 274 THR VAL GLU ALA ALA SER SER CYS ASN PRO ALA SER VAL SEQRES 19 C 274 SER PRO TYR GLY GLN LEU SER GLN GLN GLN VAL ALA ALA SEQRES 20 C 274 MET GLU TRP VAL GLN LYS ASN TYR MET VAL TYR ASN TYR SEQRES 21 C 274 CYS ASP ASP PRO THR ARG ASP HIS THR LEU THR PRO GLU SEQRES 22 C 274 CYS HET GOL A 300 6 HET GOL A 301 6 HET GOL B 300 6 HET GOL C 300 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 4(C3 H8 O3) FORMUL 8 HOH *443(H2 O) HELIX 1 1 TYR A 9 ILE A 14 5 6 HELIX 2 2 GLY A 18 GLY A 22 1 5 HELIX 3 3 GLY A 28 GLN A 30 5 3 HELIX 4 4 SER A 169 PHE A 173 5 5 HELIX 5 5 GLU A 193 LYS A 196 5 4 HELIX 6 6 ASP A 200 GLN A 204 5 5 HELIX 7 7 SER A 238 TYR A 252 1 15 HELIX 8 8 CYS A 258 ASP A 260 5 3 HELIX 9 9 ASP A 264 THR A 268 5 5 HELIX 10 10 TYR B 9 ILE B 14 1 6 HELIX 11 11 GLY B 18 GLY B 22 1 5 HELIX 12 12 GLY B 28 GLN B 30 5 3 HELIX 13 13 SER B 169 PHE B 173 5 5 HELIX 14 14 ASP B 200 GLN B 204 5 5 HELIX 15 15 SER B 238 TYR B 252 1 15 HELIX 16 16 CYS B 258 ASP B 260 5 3 HELIX 17 17 ASP B 264 THR B 268 5 5 HELIX 18 18 TYR C 9 ILE C 14 5 6 HELIX 19 19 GLY C 18 GLY C 22 1 5 HELIX 20 20 GLY C 28 GLN C 30 5 3 HELIX 21 21 SER C 169 PHE C 173 5 5 HELIX 22 22 ASP C 200 GLN C 204 5 5 HELIX 23 23 SER C 238 TYR C 252 1 15 HELIX 24 24 CYS C 258 ASP C 260 5 3 HELIX 25 25 ASP C 264 THR C 268 5 5 SHEET 1 AA 8 TYR A 23 TRP A 27 0 SHEET 2 AA 8 SER A 49 SER A 53 -1 O GLY A 50 N LEU A 26 SHEET 3 AA 8 TRP A 179 ASP A 186 -1 O VAL A 180 N SER A 53 SHEET 4 AA 8 VAL A 76 SER A 83 -1 O ILE A 77 N TRP A 185 SHEET 5 AA 8 GLU A 94 LEU A 100 -1 O ILE A 95 N LEU A 82 SHEET 6 AA 8 THR A 109 PHE A 115 -1 O THR A 109 N LEU A 100 SHEET 7 AA 8 MET A 129 ILE A 131 -1 O MET A 129 N THR A 112 SHEET 8 AA 8 MET A 253 ASN A 256 -1 N VAL A 254 O ARG A 130 SHEET 1 AB 7 GLN A 32 ASP A 35 0 SHEET 2 AB 7 SER A 38 LEU A 43 -1 O SER A 38 N ASP A 35 SHEET 3 AB 7 PHE A 206 THR A 219 -1 O PHE A 206 N LEU A 43 SHEET 4 AB 7 TYR A 57 LYS A 67 -1 N ARG A 58 O CYS A 218 SHEET 5 AB 7 HIS A 142 TRP A 148 -1 O HIS A 142 N ILE A 66 SHEET 6 AB 7 GLU A 152 VAL A 157 -1 O ILE A 154 N TYR A 147 SHEET 7 AB 7 VAL A 160 PRO A 166 -1 O VAL A 160 N VAL A 157 SHEET 1 BA 8 TYR B 23 TRP B 27 0 SHEET 2 BA 8 SER B 49 SER B 53 -1 O GLY B 50 N LEU B 26 SHEET 3 BA 8 TRP B 179 ASP B 186 -1 O VAL B 180 N SER B 53 SHEET 4 BA 8 VAL B 76 SER B 83 -1 O ILE B 77 N TRP B 185 SHEET 5 BA 8 GLU B 94 LEU B 100 -1 O ILE B 95 N LEU B 82 SHEET 6 BA 8 THR B 109 PHE B 115 -1 O THR B 109 N LEU B 100 SHEET 7 BA 8 MET B 129 ILE B 131 -1 O MET B 129 N THR B 112 SHEET 8 BA 8 MET B 253 ASN B 256 -1 N VAL B 254 O ARG B 130 SHEET 1 BB 7 GLN B 32 ASP B 35 0 SHEET 2 BB 7 SER B 38 LEU B 43 -1 O SER B 38 N ASP B 35 SHEET 3 BB 7 PHE B 206 THR B 219 -1 O PHE B 206 N LEU B 43 SHEET 4 BB 7 TYR B 57 LYS B 67 -1 N ARG B 58 O CYS B 218 SHEET 5 BB 7 HIS B 142 TRP B 148 -1 O HIS B 142 N ILE B 66 SHEET 6 BB 7 GLU B 152 VAL B 157 -1 O ILE B 154 N TYR B 147 SHEET 7 BB 7 VAL B 160 PRO B 166 -1 O VAL B 160 N VAL B 157 SHEET 1 CA 8 TYR C 23 TRP C 27 0 SHEET 2 CA 8 SER C 49 SER C 53 -1 O GLY C 50 N LEU C 26 SHEET 3 CA 8 TRP C 179 ASP C 186 -1 O VAL C 180 N SER C 53 SHEET 4 CA 8 VAL C 76 SER C 83 -1 O ILE C 77 N TRP C 185 SHEET 5 CA 8 GLU C 94 LEU C 100 -1 O ILE C 95 N LEU C 82 SHEET 6 CA 8 THR C 109 PHE C 115 -1 O THR C 109 N LEU C 100 SHEET 7 CA 8 MET C 129 ILE C 131 -1 O MET C 129 N THR C 112 SHEET 8 CA 8 MET C 253 ASN C 256 -1 N VAL C 254 O ARG C 130 SHEET 1 CB 7 GLN C 32 ASP C 35 0 SHEET 2 CB 7 SER C 38 LEU C 43 -1 O SER C 38 N ASP C 35 SHEET 3 CB 7 PHE C 206 THR C 219 -1 O PHE C 206 N LEU C 43 SHEET 4 CB 7 TYR C 57 LYS C 67 -1 N ARG C 58 O CYS C 218 SHEET 5 CB 7 HIS C 142 THR C 149 -1 O HIS C 142 N ILE C 66 SHEET 6 CB 7 GLU C 152 VAL C 157 -1 O GLU C 152 N THR C 149 SHEET 7 CB 7 VAL C 160 PRO C 166 -1 O VAL C 160 N VAL C 157 SSBOND 1 CYS A 218 CYS A 226 1555 1555 2.08 SSBOND 2 CYS A 258 CYS A 271 1555 1555 2.06 SSBOND 3 CYS B 218 CYS B 226 1555 1555 2.06 SSBOND 4 CYS B 258 CYS B 271 1555 1555 2.05 SSBOND 5 CYS C 218 CYS C 226 1555 1555 2.06 SSBOND 6 CYS C 258 CYS C 271 1555 1555 2.06 CISPEP 1 GLN A 204 PRO A 205 0 -2.71 CISPEP 2 GLN B 204 PRO B 205 0 1.03 CISPEP 3 GLN C 204 PRO C 205 0 -12.68 SITE 1 AC1 6 ASN A 55 ARG A 56 THR A 219 VAL A 220 SITE 2 AC1 6 GLU A 221 THR C 46 SITE 1 AC2 6 ILE A 77 SER A 79 TYR A 81 GLU A 94 SITE 2 AC2 6 GLU A 98 TRP A 185 SITE 1 AC3 4 SER B 79 GLU B 94 GLU B 98 TRP B 185 SITE 1 AC4 5 SER C 79 TYR C 81 GLU C 94 GLU C 98 SITE 2 AC4 5 TRP C 185 CRYST1 116.109 116.109 63.071 90.00 90.00 120.00 P 31 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008613 0.004972 0.000000 0.00000 SCALE2 0.000000 0.009945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015855 0.00000 MTRIX1 1 0.917170 0.398430 -0.004290 -0.02098 1 MTRIX2 1 0.398470 -0.917160 0.007990 66.97905 1 MTRIX3 1 -0.007120 -0.005620 -0.999960 -19.11879 1 MTRIX1 2 -0.867120 0.497990 -0.010100 -58.01492 1 MTRIX2 2 -0.498090 -0.866850 0.021970 33.44620 1 MTRIX3 2 0.002190 0.024080 0.999710 -32.51470 1