HEADER HYDROLASE 20-MAR-07 2UWC TITLE CRYSTAL STRUCTURE OF NASTURTIUM XYLOGLUCAN HYDROLASE ISOFORM NXG2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 25-295; COMPND 5 SYNONYM: XYLOGLUCAN HYDROLASE; COMPND 6 EC: 3.2.1.151, 3.2.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TROPAEOLUM MAJUS; SOURCE 3 ORGANISM_COMMON: NASTURTIUM; SOURCE 4 ORGANISM_TAXID: 4020; SOURCE 5 TISSUE: SEEDLING; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEM T EASY; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPIC9-NXG2 KEYWDS TROPAEOLUM MAJUS, XYLOGLUCAN HYDROLASE, XYLOGLUCAN-ENDO-TRANSFERASE, KEYWDS 2 HYDROLASE, GLYCOSIDASE, FAMILY GH16, ISOFORM NXG2 EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BAUMANN,J.M.EKLOF,G.MICHEL,A.KALLAS,T.T.TEERI,H.BRUMER,M.CZJZEK REVDAT 4 13-NOV-24 2UWC 1 REMARK REVDAT 3 13-DEC-23 2UWC 1 REMARK REVDAT 2 24-FEB-09 2UWC 1 VERSN REVDAT 1 26-JUN-07 2UWC 0 JRNL AUTH M.J.BAUMANN,J.M.EKLOF,G.MICHEL,A.M.KALLAS,T.T.TEERI, JRNL AUTH 2 M.CZJZEK,H.BRUMER JRNL TITL STRUCTURAL EVIDENCE FOR THE EVOLUTION OF XYLOGLUCANASE JRNL TITL 2 ACTIVITY FROM XYLOGLUCAN ENDO-TRANSGLYCOSYLASES: BIOLOGICAL JRNL TITL 3 IMPLICATIONS FOR CELL WALL METABOLISM. JRNL REF PLANT CELL V. 19 1947 2007 JRNL REFN ISSN 1040-4651 JRNL PMID 17557806 JRNL DOI 10.1105/TPC.107.051391 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 45345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3334 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.172 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4445 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3700 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6065 ; 2.103 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8639 ; 1.053 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 527 ; 9.246 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;34.392 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 648 ;17.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 609 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5015 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 983 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 803 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3716 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2073 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2557 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 278 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3284 ; 1.259 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4290 ; 1.652 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2245 ; 2.700 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1775 ; 3.860 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 189 5 REMARK 3 1 B 3 B 189 5 REMARK 3 2 A 198 A 265 5 REMARK 3 2 B 198 B 265 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1491 ; 0.08 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 2348 ; 0.30 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1491 ; 0.44 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2348 ; 0.74 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2UWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1290031969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47776 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1UN1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-3 M POTASSIUM ACETATE, 2% 2, 5 REMARK 280 -METHYLPENTANE-DIOL AND 100 MM TRIS BUFFER AT PH 8.5, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 193 REMARK 465 ASN A 194 REMARK 465 GLY A 195 REMARK 465 GLN B 1 REMARK 465 GLY B 2 REMARK 465 GLU B 193 REMARK 465 ASN B 194 REMARK 465 GLY B 195 REMARK 465 LYS B 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 204 C PRO A 205 1.73 REMARK 500 O GLN A 204 N PHE A 206 2.03 REMARK 500 O HOH A 2070 O HOH A 2072 2.10 REMARK 500 N PRO A 205 O HOH A 2112 2.11 REMARK 500 O HOH A 2126 O HOH A 2128 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 21 CG GLN A 21 CD 0.160 REMARK 500 TYR A 57 CE1 TYR A 57 CZ 0.081 REMARK 500 SER A 59 CB SER A 59 OG -0.088 REMARK 500 GLU A 117 CD GLU A 117 OE1 0.076 REMARK 500 GLU A 211 CB GLU A 211 CG -0.176 REMARK 500 GLN B 21 CG GLN B 21 CD 0.161 REMARK 500 ARG B 56 CB ARG B 56 CG -0.168 REMARK 500 ASN B 143 CG ASN B 143 OD1 0.136 REMARK 500 GLN B 204 CA GLN B 204 C -0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 178 CB - CG - SD ANGL. DEV. = -27.5 DEGREES REMARK 500 ASP A 186 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 PRO A 205 C - N - CA ANGL. DEV. = -29.7 DEGREES REMARK 500 PRO A 205 C - N - CD ANGL. DEV. = 28.3 DEGREES REMARK 500 ARG B 56 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP B 140 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP B 140 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 MET B 178 CA - CB - CG ANGL. DEV. = 10.8 DEGREES REMARK 500 MET B 178 CB - CG - SD ANGL. DEV. = -18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 149.97 -174.26 REMARK 500 SER A 59 149.99 178.20 REMARK 500 ILE A 125 76.67 -111.29 REMARK 500 ALA A 191 65.91 -59.31 REMARK 500 TYR A 197 -169.42 159.07 REMARK 500 GLN A 204 -92.54 -28.63 REMARK 500 ALA A 223 140.50 -34.26 REMARK 500 ARG A 263 131.17 69.69 REMARK 500 SER B 47 148.27 178.89 REMARK 500 SER B 59 148.47 -179.40 REMARK 500 ILE B 125 78.58 -108.42 REMARK 500 ALA B 187 43.08 -107.46 REMARK 500 TYR B 203 51.48 -103.10 REMARK 500 ALA B 223 140.61 -38.46 REMARK 500 ARG B 263 128.81 78.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 235 GLN A 236 146.50 REMARK 500 ASP B 96 ILE B 97 146.66 REMARK 500 TYR B 203 GLN B 204 -110.44 REMARK 500 GLY B 235 GLN B 236 143.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UWB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NASTURTIUM SEEDLING MUTANT XYLOGLUCANASE REMARK 900 ISOFORM NXG1-DELTA-YNIIG REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST TWO RESIDUES ARE NOT DEFINED BY THE ELECTRON REMARK 999 DENSITY DBREF 2UWC A 1 271 UNP Q07524 Q07524_TROMA 25 295 DBREF 2UWC B 1 271 UNP Q07524 Q07524_TROMA 25 295 SEQADV 2UWC LEU A 129 UNP Q07524 MET 153 CONFLICT SEQADV 2UWC MET A 178 UNP Q07524 LEU 202 CONFLICT SEQADV 2UWC LEU B 129 UNP Q07524 MET 153 CONFLICT SEQADV 2UWC MET B 178 UNP Q07524 LEU 202 CONFLICT SEQRES 1 A 271 GLN GLY PRO PRO SER PRO GLY TYR TYR PRO SER SER GLN SEQRES 2 A 271 ILE THR SER LEU GLY PHE ASP GLN GLY TYR THR ASN LEU SEQRES 3 A 271 TRP GLY PRO GLN HIS GLN ARG VAL ASP GLN GLY SER LEU SEQRES 4 A 271 THR ILE TRP LEU ASP SER THR SER GLY SER GLY PHE LYS SEQRES 5 A 271 SER ILE ASN ARG TYR ARG SER GLY TYR PHE GLY ALA ASN SEQRES 6 A 271 ILE LYS LEU GLN SER GLY TYR THR ALA GLY VAL ILE THR SEQRES 7 A 271 SER PHE TYR LEU SER ASN ASN GLN ASP TYR PRO GLY LYS SEQRES 8 A 271 HIS ASP GLU ILE ASP ILE GLU PHE LEU GLY THR ILE PRO SEQRES 9 A 271 GLY LYS PRO TYR THR LEU GLN THR ASN VAL PHE ILE GLU SEQRES 10 A 271 GLY SER GLY ASP TYR ASN ILE ILE GLY ARG GLU LEU ARG SEQRES 11 A 271 ILE HIS LEU TRP PHE ASP PRO THR GLN ASP TYR HIS ASN SEQRES 12 A 271 TYR ALA ILE TYR TRP THR PRO SER GLU ILE ILE PHE PHE SEQRES 13 A 271 VAL ASP ASP VAL PRO ILE ARG ARG TYR PRO ARG LYS SER SEQRES 14 A 271 ASP ALA THR PHE PRO LEU ARG PRO MET TRP VAL TYR GLY SEQRES 15 A 271 SER VAL TRP ASP ALA SER SER TRP ALA THR GLU ASN GLY SEQRES 16 A 271 LYS TYR LYS ALA ASP TYR ARG TYR GLN PRO PHE VAL GLY SEQRES 17 A 271 LYS TYR GLU ASP PHE LYS LEU GLY SER CYS THR VAL GLU SEQRES 18 A 271 ALA ALA SER SER CYS ASN PRO ALA SER VAL SER PRO TYR SEQRES 19 A 271 GLY GLN LEU SER GLN GLN GLN VAL ALA ALA MET GLU TRP SEQRES 20 A 271 VAL GLN LYS ASN TYR MET VAL TYR ASN TYR CYS ASP ASP SEQRES 21 A 271 PRO THR ARG ASP HIS THR LEU THR PRO GLU CYS SEQRES 1 B 271 GLN GLY PRO PRO SER PRO GLY TYR TYR PRO SER SER GLN SEQRES 2 B 271 ILE THR SER LEU GLY PHE ASP GLN GLY TYR THR ASN LEU SEQRES 3 B 271 TRP GLY PRO GLN HIS GLN ARG VAL ASP GLN GLY SER LEU SEQRES 4 B 271 THR ILE TRP LEU ASP SER THR SER GLY SER GLY PHE LYS SEQRES 5 B 271 SER ILE ASN ARG TYR ARG SER GLY TYR PHE GLY ALA ASN SEQRES 6 B 271 ILE LYS LEU GLN SER GLY TYR THR ALA GLY VAL ILE THR SEQRES 7 B 271 SER PHE TYR LEU SER ASN ASN GLN ASP TYR PRO GLY LYS SEQRES 8 B 271 HIS ASP GLU ILE ASP ILE GLU PHE LEU GLY THR ILE PRO SEQRES 9 B 271 GLY LYS PRO TYR THR LEU GLN THR ASN VAL PHE ILE GLU SEQRES 10 B 271 GLY SER GLY ASP TYR ASN ILE ILE GLY ARG GLU LEU ARG SEQRES 11 B 271 ILE HIS LEU TRP PHE ASP PRO THR GLN ASP TYR HIS ASN SEQRES 12 B 271 TYR ALA ILE TYR TRP THR PRO SER GLU ILE ILE PHE PHE SEQRES 13 B 271 VAL ASP ASP VAL PRO ILE ARG ARG TYR PRO ARG LYS SER SEQRES 14 B 271 ASP ALA THR PHE PRO LEU ARG PRO MET TRP VAL TYR GLY SEQRES 15 B 271 SER VAL TRP ASP ALA SER SER TRP ALA THR GLU ASN GLY SEQRES 16 B 271 LYS TYR LYS ALA ASP TYR ARG TYR GLN PRO PHE VAL GLY SEQRES 17 B 271 LYS TYR GLU ASP PHE LYS LEU GLY SER CYS THR VAL GLU SEQRES 18 B 271 ALA ALA SER SER CYS ASN PRO ALA SER VAL SER PRO TYR SEQRES 19 B 271 GLY GLN LEU SER GLN GLN GLN VAL ALA ALA MET GLU TRP SEQRES 20 B 271 VAL GLN LYS ASN TYR MET VAL TYR ASN TYR CYS ASP ASP SEQRES 21 B 271 PRO THR ARG ASP HIS THR LEU THR PRO GLU CYS FORMUL 3 HOH *294(H2 O) HELIX 1 1 TYR A 9 ILE A 14 5 6 HELIX 2 2 GLY A 18 GLN A 21 5 4 HELIX 3 3 GLY A 28 GLN A 30 5 3 HELIX 4 4 SER A 169 PHE A 173 5 5 HELIX 5 5 ASP A 200 GLN A 204 5 5 HELIX 6 6 SER A 232 GLN A 236 5 5 HELIX 7 7 SER A 238 TYR A 252 1 15 HELIX 8 8 CYS A 258 ASP A 260 5 3 HELIX 9 9 ASP A 264 THR A 268 5 5 HELIX 10 10 TYR B 9 ILE B 14 5 6 HELIX 11 11 GLY B 18 GLN B 21 5 4 HELIX 12 12 GLY B 28 GLN B 30 5 3 HELIX 13 13 SER B 169 PHE B 173 5 5 HELIX 14 14 ASP B 200 GLN B 204 5 5 HELIX 15 15 SER B 232 GLN B 236 5 5 HELIX 16 16 SER B 238 TYR B 252 1 15 HELIX 17 17 CYS B 258 ASP B 260 5 3 SHEET 1 AA 8 TYR A 23 TRP A 27 0 SHEET 2 AA 8 SER A 49 LYS A 67 -1 O GLY A 50 N LEU A 26 SHEET 3 AA 8 MET A 178 ASP A 186 -1 O MET A 178 N TYR A 57 SHEET 4 AA 8 VAL A 76 SER A 83 -1 O ILE A 77 N TRP A 185 SHEET 5 AA 8 GLU A 94 LEU A 100 -1 O ILE A 95 N LEU A 82 SHEET 6 AA 8 THR A 109 PHE A 115 -1 O THR A 109 N LEU A 100 SHEET 7 AA 8 LEU A 129 HIS A 132 -1 O LEU A 129 N THR A 112 SHEET 8 AA 8 MET A 253 ASN A 256 -1 N VAL A 254 O ARG A 130 SHEET 1 AB 5 TYR A 23 TRP A 27 0 SHEET 2 AB 5 SER A 49 LYS A 67 -1 O GLY A 50 N LEU A 26 SHEET 3 AB 5 PHE A 206 THR A 219 -1 O LYS A 209 N LYS A 67 SHEET 4 AB 5 SER A 38 LEU A 43 -1 O LEU A 39 N TYR A 210 SHEET 5 AB 5 GLN A 32 ASP A 35 -1 O ARG A 33 N THR A 40 SHEET 1 BA 8 TYR B 23 TRP B 27 0 SHEET 2 BA 8 SER B 49 SER B 53 -1 O GLY B 50 N LEU B 26 SHEET 3 BA 8 TRP B 179 ASP B 186 -1 O VAL B 180 N SER B 53 SHEET 4 BA 8 VAL B 76 SER B 83 -1 O ILE B 77 N TRP B 185 SHEET 5 BA 8 GLU B 94 LEU B 100 -1 O ILE B 95 N LEU B 82 SHEET 6 BA 8 THR B 109 PHE B 115 -1 O THR B 109 N LEU B 100 SHEET 7 BA 8 LEU B 129 HIS B 132 -1 O LEU B 129 N THR B 112 SHEET 8 BA 8 MET B 253 ASN B 256 -1 N VAL B 254 O ARG B 130 SHEET 1 BB 7 GLN B 32 ASP B 35 0 SHEET 2 BB 7 SER B 38 LEU B 43 -1 O SER B 38 N ASP B 35 SHEET 3 BB 7 PHE B 206 THR B 219 -1 O PHE B 206 N LEU B 43 SHEET 4 BB 7 TYR B 57 LYS B 67 -1 N ARG B 58 O CYS B 218 SHEET 5 BB 7 HIS B 142 TRP B 148 -1 O HIS B 142 N ILE B 66 SHEET 6 BB 7 GLU B 152 VAL B 157 -1 O ILE B 154 N TYR B 147 SHEET 7 BB 7 VAL B 160 PRO B 166 -1 O VAL B 160 N VAL B 157 SSBOND 1 CYS A 218 CYS A 226 1555 1555 2.75 SSBOND 2 CYS A 258 CYS A 271 1555 1555 2.68 SSBOND 3 CYS B 218 CYS B 226 1555 1555 2.75 SSBOND 4 CYS B 258 CYS B 271 1555 1555 2.71 CRYST1 152.123 152.123 83.233 90.00 90.00 120.00 P 6 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006574 0.003795 0.000000 0.00000 SCALE2 0.000000 0.007591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012014 0.00000 MTRIX1 1 0.499210 -0.866480 0.002060 76.11953 1 MTRIX2 1 -0.866480 -0.499210 -0.000670 131.68204 1 MTRIX3 1 0.001610 -0.001450 -1.000000 -40.42295 1