HEADER ELECTRON TRANSPORT 27-MAR-07 2UX6 TITLE PSEUDOAZURIN WITH ENGINEERED AMICYANIN LIGAND LOOP, OXIDIZED FORM, PH TITLE 2 7.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDOAZURIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BLUE COPPER PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE C-TERMINAL LIGAND-BINDING LOOP BETWEEN H81 AND M86 COMPND 7 HAS BEEN REPLACED BY THE RESPECTIVE SHORTER LOOP OF AMICYANIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER CYCLOCLASTES; SOURCE 3 ORGANISM_TAXID: 223; SOURCE 4 ORGAN: PERIPLASM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRCPAZAMI, PTRC99A KEYWDS TYPE-1 COPPER, METAL-BINDING, REDOX POTENTIAL, COPPER, TRANSPORT, KEYWDS 2 CUPREDOXIN, PERIPLASMIC, ELECTRON TRANSPORT, SPECTROSCOPIC KEYWDS 3 PROPERTIES, LOOP SHORTENING, PROTEIN SCAFFOLD, ELECTRON TRANSFER EXPDTA X-RAY DIFFRACTION AUTHOR M.VELARDE,R.HUBER,S.YANAGISAWA,C.DENNISON,A.MESSERSCHMIDT REVDAT 5 13-DEC-23 2UX6 1 LINK REVDAT 4 08-MAY-19 2UX6 1 REMARK REVDAT 3 24-FEB-09 2UX6 1 VERSN REVDAT 2 04-SEP-07 2UX6 1 JRNL REVDAT 1 21-AUG-07 2UX6 0 JRNL AUTH M.VELARDE,R.HUBER,S.YANAGISAWA,C.DENNISON,A.MESSERSCHMIDT JRNL TITL INFLUENCE OF LOOP SHORTENING ON THE METAL BINDING SITE OF JRNL TITL 2 CUPREDOXIN PSEUDOAZURIN. JRNL REF BIOCHEMISTRY V. 46 9981 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17685636 JRNL DOI 10.1021/BI701113W REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 27344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 903 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.19000 REMARK 3 B22 (A**2) : -1.19000 REMARK 3 B33 (A**2) : 1.78000 REMARK 3 B12 (A**2) : -0.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.995 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 993 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1342 ; 1.220 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 131 ; 6.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 37 ;36.990 ;26.486 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 173 ;13.730 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;10.573 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 148 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 745 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 466 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 647 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.348 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 664 ; 0.647 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1043 ; 0.979 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 359 ; 1.736 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 299 ; 2.510 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8510 64.0200 26.1840 REMARK 3 T TENSOR REMARK 3 T11: -0.0891 T22: -0.0937 REMARK 3 T33: -0.1055 T12: 0.0262 REMARK 3 T13: 0.0689 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.9096 L22: 4.4142 REMARK 3 L33: 0.6137 L12: -2.6009 REMARK 3 L13: 0.1317 L23: -0.2895 REMARK 3 S TENSOR REMARK 3 S11: 0.1978 S12: 0.2388 S13: 0.4533 REMARK 3 S21: -0.3515 S22: -0.2272 S23: -0.7145 REMARK 3 S31: -0.0238 S32: -0.0550 S33: 0.0294 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. LOOP A10 TO A15 HAS BEEN MODELED WITH TWO MAIN CHAIN REMARK 3 CONFORMATIONS. SOME SIDE CHAINS HAVE BEEN MODELED WITH TWO REMARK 3 ALTERNATE SIDE CHAIN CONFORMATIONS. THE COPPER AND SULFUR ATOMS REMARK 3 HAVE BEEN REFINED ANISOTROPICALLY. REMARK 4 REMARK 4 2UX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1290032073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28824 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BQK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION METHOD, REMARK 280 MIXING 1MICRO-L OF PROTEIN (20 MG/ML IN 50 MM TRIS/HCL, PH 7.5 REMARK 280 PLUS 30 MM NACL) WITH 1 MICRO-L RESERVOIR SOLUTION (10 MM TRIS/ REMARK 280 HCL, PH 7.5 PLUS 2 M AMMONIUM SULFATE PLUS 2 M NACL)., VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.499995 -0.866034 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866017 -0.500005 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500005 0.866034 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866017 -0.499995 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.499995 0.866039 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866017 0.499995 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500005 -0.866028 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866017 0.500005 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 52.81367 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.49160 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 19.30833 REMARK 290 SMTRY1 8 -0.499995 -0.866034 0.000000 52.81367 REMARK 290 SMTRY2 8 0.866017 -0.500005 0.000000 30.49160 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 19.30833 REMARK 290 SMTRY1 9 -0.500005 0.866034 0.000000 52.81367 REMARK 290 SMTRY2 9 -0.866017 -0.499995 0.000000 30.49160 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 19.30833 REMARK 290 SMTRY1 10 -0.499995 0.866039 0.000000 52.81367 REMARK 290 SMTRY2 10 0.866017 0.499995 0.000000 30.49160 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.30833 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 52.81367 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.49160 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 19.30833 REMARK 290 SMTRY1 12 -0.500005 -0.866028 0.000000 52.81367 REMARK 290 SMTRY2 12 -0.866017 0.500005 0.000000 30.49160 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.30833 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00033 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.98320 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 38.61667 REMARK 290 SMTRY1 14 -0.499995 -0.866034 0.000000 0.00033 REMARK 290 SMTRY2 14 0.866017 -0.500005 0.000000 60.98320 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 38.61667 REMARK 290 SMTRY1 15 -0.500005 0.866034 0.000000 0.00033 REMARK 290 SMTRY2 15 -0.866017 -0.499995 0.000000 60.98320 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 38.61667 REMARK 290 SMTRY1 16 -0.499995 0.866039 0.000000 0.00033 REMARK 290 SMTRY2 16 0.866017 0.499995 0.000000 60.98320 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 38.61667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00033 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 60.98320 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 38.61667 REMARK 290 SMTRY1 18 -0.500005 -0.866028 0.000000 0.00033 REMARK 290 SMTRY2 18 -0.866017 0.500005 0.000000 60.98320 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 38.61667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2057 O HOH A 2069 11566 1.70 REMARK 500 O HOH A 2104 O HOH A 2104 4556 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 16 79.25 37.20 REMARK 500 MET A 16 79.25 68.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1123 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 40 ND1 REMARK 620 2 CYS A 78 SG 128.9 REMARK 620 3 HIS A 81 ND1 95.4 107.8 REMARK 620 4 MET A 84 SD 89.9 116.0 117.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A1123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1125 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BQK RELATED DB: PDB REMARK 900 OXIDIZED PSEUDOAZURIN REMARK 900 RELATED ID: 1BQR RELATED DB: PDB REMARK 900 REDUCED PSEUDOAZURIN REMARK 900 RELATED ID: 1ZIA RELATED DB: PDB REMARK 900 OXIDIZED PSEUDOAZURIN REMARK 900 RELATED ID: 1ZIB RELATED DB: PDB REMARK 900 REDUCED PSEUDOAZURIN REMARK 900 RELATED ID: 2UX7 RELATED DB: PDB REMARK 900 PSEUDOAZURIN WITH ENGINEERED AMICYANIN LIGAND LOOP, REDUCED FORM, REMARK 900 PH 7.5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE CONTAINS THE SIGNAL PEPTIDE SEQUENCE. THE REMARK 999 MATURE SEQUENCE STARTS AT A29 AND HAS 124 AMINO ACID REMARK 999 REDIDUES. DBREF 2UX6 A 1 81 UNP P19567 AZUP_ACHCY 29 109 DBREF 2UX6 A 82 83 PDB 2UX6 2UX6 82 83 DBREF 2UX6 A 84 122 UNP P19567 AZUP_ACHCY 114 152 SEQRES 1 A 122 ALA ASP PHE GLU VAL HIS MET LEU ASN LYS GLY LYS ASP SEQRES 2 A 122 GLY ALA MET VAL PHE GLU PRO ALA SER LEU LYS VAL ALA SEQRES 3 A 122 PRO GLY ASP THR VAL THR PHE ILE PRO THR ASP LYS GLY SEQRES 4 A 122 HIS ASN VAL GLU THR ILE LYS GLY MET ILE PRO ASP GLY SEQRES 5 A 122 ALA GLU ALA PHE LYS SER LYS ILE ASN GLU ASN TYR LYS SEQRES 6 A 122 VAL THR PHE THR ALA PRO GLY VAL TYR GLY VAL LYS CYS SEQRES 7 A 122 THR PRO HIS PRO PHE MET VAL GLY VAL VAL GLN VAL GLY SEQRES 8 A 122 ASP ALA PRO ALA ASN LEU GLU ALA VAL LYS GLY ALA LYS SEQRES 9 A 122 ASN PRO LYS LYS ALA GLN GLU ARG LEU ASP ALA ALA LEU SEQRES 10 A 122 ALA ALA LEU GLY ASN HET CU A1123 1 HET GOL A1124 6 HET CL A1125 1 HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CU CU 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 CL CL 1- FORMUL 5 HOH *115(H2 O) HELIX 1 1 ASN A 96 GLY A 102 1 7 HELIX 2 2 PRO A 106 LEU A 120 1 15 SHEET 1 AA 4 GLY A 14 GLU A 19 0 SHEET 2 AA 4 ASP A 2 GLY A 11 -1 O HIS A 6 N GLU A 19 SHEET 3 AA 4 ASP A 29 PRO A 35 1 O THR A 30 N PHE A 3 SHEET 4 AA 4 TYR A 64 PHE A 68 -1 O TYR A 64 N PHE A 33 SHEET 1 AB 4 SER A 22 VAL A 25 0 SHEET 2 AB 4 HIS A 81 VAL A 90 1 O VAL A 87 N LEU A 23 SHEET 3 AB 4 GLY A 72 CYS A 78 -1 O GLY A 72 N VAL A 90 SHEET 4 AB 4 GLU A 43 THR A 44 -1 O GLU A 43 N LYS A 77 LINK ND1 HIS A 40 CU CU A1123 1555 1555 2.09 LINK SG CYS A 78 CU CU A1123 1555 1555 2.22 LINK ND1 HIS A 81 CU CU A1123 1555 1555 2.09 LINK SD MET A 84 CU CU A1123 1555 1555 2.39 CISPEP 1 GLU A 19 PRO A 20 0 -5.54 SITE 1 AC1 4 HIS A 40 CYS A 78 HIS A 81 MET A 84 SITE 1 AC2 7 ALA A 53 GLU A 54 THR A 67 THR A 69 SITE 2 AC2 7 ALA A 70 TYR A 74 HOH A2115 SITE 1 AC3 3 ASN A 63 PRO A 71 HOH A2083 CRYST1 105.627 105.626 57.925 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009467 0.005466 0.000000 0.00000 SCALE2 0.000000 0.010932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017264 0.00000