HEADER TRANSCRIPTION 28-MAR-07 2UXI TITLE PHLORETIN IN COMPLEX WITH TTGR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TOLUENE EFFLUX PUMP TTGABC OPERON REPRESSOR, COMPND 5 TRANSCRIPTIONAL REPRESSOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: DOT-T1E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS TRANSCRIPTION, DNA-BINDING, TETR FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR Y.ALGUEL,C.MENG,W.TERAN,T.KRELL,J.L.RAMOS,M.-T.GALLEGOS,X.ZHANG REVDAT 4 13-JUL-11 2UXI 1 VERSN REVDAT 3 24-FEB-09 2UXI 1 VERSN REVDAT 2 22-MAY-07 2UXI 1 JRNL REVDAT 1 08-MAY-07 2UXI 0 JRNL AUTH Y.ALGUEL,C.MENG,W.TERAN,T.KRELL,J.L.RAMOS,M.-T.GALLEGOS, JRNL AUTH 2 X.ZHANG JRNL TITL CRYSTAL STRUCTURES OF MULTIDRUG BINDING PROTEIN TTGR IN JRNL TITL 2 COMPLEX WITH ANTIBIOTICS AND PLANT ANTIMICROBIALS. JRNL REF J.MOL.BIOL. V. 369 829 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17466326 JRNL DOI 10.1016/J.JMB.2007.03.062 REMARK 2 REMARK 2 RESOLUTION. 2.5 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 14018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1156 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1039 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.86000 REMARK 3 B22 (A**2) : -3.94000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.267 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.391 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.268 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.863 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3318 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4495 ; 1.634 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 5.641 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;43.289 ;23.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;20.235 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;23.320 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 508 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2533 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1926 ; 0.295 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2286 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.270 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.366 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.703 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2102 ; 1.055 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3247 ; 1.576 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 2.215 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1248 ; 3.491 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7186 10.5862 20.4228 REMARK 3 T TENSOR REMARK 3 T11: -0.0407 T22: -0.1799 REMARK 3 T33: -0.1236 T12: 0.0035 REMARK 3 T13: 0.0078 T23: 0.0632 REMARK 3 L TENSOR REMARK 3 L11: 3.6508 L22: 3.6735 REMARK 3 L33: 0.2497 L12: 1.1143 REMARK 3 L13: -0.5054 L23: 0.6196 REMARK 3 S TENSOR REMARK 3 S11: 0.0793 S12: -0.1183 S13: -0.1912 REMARK 3 S21: 0.2605 S22: -0.1655 S23: 0.1295 REMARK 3 S31: -0.2066 S32: 0.0733 S33: 0.0861 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 54 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0387 36.3608 12.0627 REMARK 3 T TENSOR REMARK 3 T11: -0.0903 T22: -0.1247 REMARK 3 T33: -0.1474 T12: 0.0152 REMARK 3 T13: -0.0021 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.7921 L22: 1.3680 REMARK 3 L33: 0.6154 L12: 0.2745 REMARK 3 L13: -0.1354 L23: -0.0352 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: 0.0005 S13: 0.0504 REMARK 3 S21: 0.1329 S22: -0.0677 S23: 0.1523 REMARK 3 S31: -0.0630 S32: -0.0814 S33: -0.0139 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0435 10.1568 -11.2305 REMARK 3 T TENSOR REMARK 3 T11: 0.0862 T22: -0.1670 REMARK 3 T33: -0.1199 T12: 0.0823 REMARK 3 T13: 0.0999 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 7.7234 L22: 1.9508 REMARK 3 L33: 6.2405 L12: -1.6045 REMARK 3 L13: -5.1688 L23: 2.0648 REMARK 3 S TENSOR REMARK 3 S11: -0.2459 S12: -0.1702 S13: -0.2767 REMARK 3 S21: -0.3084 S22: -0.0588 S23: 0.0172 REMARK 3 S31: 0.7009 S32: 0.3153 S33: 0.3047 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5595 35.5405 -2.5868 REMARK 3 T TENSOR REMARK 3 T11: -0.0792 T22: -0.1331 REMARK 3 T33: -0.1656 T12: 0.0085 REMARK 3 T13: -0.0167 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 0.5946 L22: 1.2057 REMARK 3 L33: 0.9818 L12: -0.0917 REMARK 3 L13: -0.4632 L23: -0.2376 REMARK 3 S TENSOR REMARK 3 S11: 0.0768 S12: 0.0605 S13: -0.0480 REMARK 3 S21: -0.0609 S22: -0.0413 S23: -0.1543 REMARK 3 S31: -0.0408 S32: 0.0446 S33: -0.0355 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1211 A 1211 REMARK 3 RESIDUE RANGE : B 1211 B 1211 REMARK 3 RESIDUE RANGE : B 1212 B 1212 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9416 34.2808 6.7211 REMARK 3 T TENSOR REMARK 3 T11: 0.0044 T22: 0.0019 REMARK 3 T33: 0.0066 T12: 0.0031 REMARK 3 T13: -0.0126 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0076 L22: 1.3800 REMARK 3 L33: 2.0516 L12: 0.1023 REMARK 3 L13: 0.1248 L23: 1.6826 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: 2.2080 S13: 1.0802 REMARK 3 S21: 0.3496 S22: 0.1668 S23: 0.5846 REMARK 3 S31: -0.2174 S32: -0.9647 S33: -0.1343 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2078 REMARK 3 RESIDUE RANGE : B 2001 B 2071 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7663 32.7528 5.1413 REMARK 3 T TENSOR REMARK 3 T11: 0.2332 T22: 0.4576 REMARK 3 T33: 0.4349 T12: -0.0200 REMARK 3 T13: 0.0305 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.2793 L22: 0.0595 REMARK 3 L33: 0.2440 L12: -0.0131 REMARK 3 L13: 0.0390 L23: 0.1150 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: 0.0127 S13: 0.0086 REMARK 3 S21: -0.0719 S22: -0.0099 S23: 0.0358 REMARK 3 S31: -0.0670 S32: -0.0172 S33: 0.0261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2UXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAR-07. REMARK 100 THE PDBE ID CODE IS EBI-32107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9756 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15174 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 94.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M BIS-TRIS PH REMARK 280 6.5, 25% (V/V) PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 23.61050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 115.30700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.61050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 115.30700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH Z 12 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 ARG B 4 REMARK 465 THR B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 5 OG1 CG2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 THR A 33 OG1 CG2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LEU A 40 CG CD1 CD2 REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 15 CG CD OE1 NE2 REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 63 CG CD1 CD2 REMARK 470 VAL B 83 CG1 CG2 REMARK 470 MET B 123 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 117 CA - CB - SG ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 17 -71.01 -46.80 REMARK 500 ALA A 38 -81.57 -62.86 REMARK 500 VAL A 43 132.28 -38.42 REMARK 500 THR A 44 144.47 -39.26 REMARK 500 ASN A 54 -148.00 -154.55 REMARK 500 ASP A 121 36.16 -69.89 REMARK 500 ASP A 122 -33.37 -141.43 REMARK 500 MET A 123 67.98 -112.89 REMARK 500 GLU A 157 44.02 -92.41 REMARK 500 ASP A 183 7.77 -61.89 REMARK 500 GLU B 8 -74.59 -83.95 REMARK 500 VAL B 43 -166.71 -114.73 REMARK 500 CYS B 117 45.61 77.03 REMARK 500 ARG B 150 5.65 -53.67 REMARK 500 PRO B 155 131.78 -37.54 REMARK 500 ALA B 160 -70.82 -52.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 150 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G50 A1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G50 B1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G50 B1212 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UXH RELATED DB: PDB REMARK 900 TTGR IN COMPLEX WITH QUERCETIN DBREF 2UXI A 1 210 UNP Q9AIU0 TTGR_PSEPU 1 210 DBREF 2UXI B 1 210 UNP Q9AIU0 TTGR_PSEPU 1 210 SEQRES 1 A 210 MET VAL ARG ARG THR LYS GLU GLU ALA GLN GLU THR ARG SEQRES 2 A 210 ALA GLN ILE ILE GLU ALA ALA GLU ARG ALA PHE TYR LYS SEQRES 3 A 210 ARG GLY VAL ALA ARG THR THR LEU ALA ASP ILE ALA GLU SEQRES 4 A 210 LEU ALA GLY VAL THR ARG GLY ALA ILE TYR TRP HIS PHE SEQRES 5 A 210 ASN ASN LYS ALA GLU LEU VAL GLN ALA LEU LEU ASP SER SEQRES 6 A 210 LEU HIS GLU THR HIS ASP HIS LEU ALA ARG ALA SER GLU SEQRES 7 A 210 SER GLU ASP GLU VAL ASP PRO LEU GLY CYS MET ARG LYS SEQRES 8 A 210 LEU LEU LEU GLN VAL PHE ASN GLU LEU VAL LEU ASP ALA SEQRES 9 A 210 ARG THR ARG ARG ILE ASN GLU ILE LEU HIS HIS LYS CYS SEQRES 10 A 210 GLU PHE THR ASP ASP MET CYS GLU ILE ARG GLN GLN ARG SEQRES 11 A 210 GLN SER ALA VAL LEU ASP CYS HIS LYS GLY ILE THR LEU SEQRES 12 A 210 ALA LEU ALA ASN ALA VAL ARG ARG GLY GLN LEU PRO GLY SEQRES 13 A 210 GLU LEU ASP ALA GLU ARG ALA ALA VAL ALA MET PHE ALA SEQRES 14 A 210 TYR VAL ASP GLY LEU ILE ARG ARG TRP LEU LEU LEU PRO SEQRES 15 A 210 ASP SER VAL ASP LEU LEU GLY ASP VAL GLU LYS TRP VAL SEQRES 16 A 210 ASP THR GLY LEU ASP MET LEU ARG LEU SER PRO ALA LEU SEQRES 17 A 210 ARG LYS SEQRES 1 B 210 MET VAL ARG ARG THR LYS GLU GLU ALA GLN GLU THR ARG SEQRES 2 B 210 ALA GLN ILE ILE GLU ALA ALA GLU ARG ALA PHE TYR LYS SEQRES 3 B 210 ARG GLY VAL ALA ARG THR THR LEU ALA ASP ILE ALA GLU SEQRES 4 B 210 LEU ALA GLY VAL THR ARG GLY ALA ILE TYR TRP HIS PHE SEQRES 5 B 210 ASN ASN LYS ALA GLU LEU VAL GLN ALA LEU LEU ASP SER SEQRES 6 B 210 LEU HIS GLU THR HIS ASP HIS LEU ALA ARG ALA SER GLU SEQRES 7 B 210 SER GLU ASP GLU VAL ASP PRO LEU GLY CYS MET ARG LYS SEQRES 8 B 210 LEU LEU LEU GLN VAL PHE ASN GLU LEU VAL LEU ASP ALA SEQRES 9 B 210 ARG THR ARG ARG ILE ASN GLU ILE LEU HIS HIS LYS CYS SEQRES 10 B 210 GLU PHE THR ASP ASP MET CYS GLU ILE ARG GLN GLN ARG SEQRES 11 B 210 GLN SER ALA VAL LEU ASP CYS HIS LYS GLY ILE THR LEU SEQRES 12 B 210 ALA LEU ALA ASN ALA VAL ARG ARG GLY GLN LEU PRO GLY SEQRES 13 B 210 GLU LEU ASP ALA GLU ARG ALA ALA VAL ALA MET PHE ALA SEQRES 14 B 210 TYR VAL ASP GLY LEU ILE ARG ARG TRP LEU LEU LEU PRO SEQRES 15 B 210 ASP SER VAL ASP LEU LEU GLY ASP VAL GLU LYS TRP VAL SEQRES 16 B 210 ASP THR GLY LEU ASP MET LEU ARG LEU SER PRO ALA LEU SEQRES 17 B 210 ARG LYS HET G50 A1211 20 HET G50 B1211 20 HET G50 B1212 20 HETNAM G50 3-(4-HYDROXYPHENYL)-1-(2,4,6- HETNAM 2 G50 TRIHYDROXYPHENYL)PROPAN-1-ONE FORMUL 3 G50 3(C15 H14 O5) FORMUL 6 HOH *149(H2 O) HELIX 1 1 LYS A 6 GLY A 28 1 23 HELIX 2 2 THR A 33 GLY A 42 1 10 HELIX 3 3 THR A 44 PHE A 52 1 9 HELIX 4 4 LYS A 55 GLU A 68 1 14 HELIX 5 5 HIS A 70 SER A 79 1 10 HELIX 6 6 ASP A 84 ASP A 103 1 20 HELIX 7 7 ASP A 103 LYS A 116 1 14 HELIX 8 8 MET A 123 ARG A 151 1 29 HELIX 9 9 ASP A 159 LEU A 181 1 23 HELIX 10 10 PRO A 182 VAL A 185 5 4 HELIX 11 11 ASP A 190 SER A 205 1 16 HELIX 12 12 GLU B 8 GLY B 28 1 21 HELIX 13 13 THR B 33 GLY B 42 1 10 HELIX 14 14 THR B 44 TRP B 50 1 7 HELIX 15 15 ASN B 54 SER B 65 1 12 HELIX 16 16 LEU B 66 GLU B 68 5 3 HELIX 17 17 HIS B 70 GLU B 78 1 9 HELIX 18 18 ASP B 84 ASP B 103 1 20 HELIX 19 19 ASP B 103 LYS B 116 1 14 HELIX 20 20 CYS B 124 ARG B 150 1 27 HELIX 21 21 ASP B 159 LEU B 181 1 23 HELIX 22 22 ASP B 190 SER B 205 1 16 HELIX 23 23 PRO B 206 LEU B 208 5 3 SITE 1 AC1 12 ALA A 74 SER A 77 GLU A 78 MET A 89 SITE 2 AC1 12 LEU A 92 ASN A 110 CYS A 137 MET A 167 SITE 3 AC1 12 HOH A2075 HOH A2076 HOH A2077 HOH A2078 SITE 1 AC2 8 HIS A 115 ARG A 176 HOH A2054 LEU B 66 SITE 2 AC2 8 ASN B 110 ARG B 130 ASP B 172 G50 B1212 SITE 1 AC3 10 ALA B 74 SER B 77 GLU B 78 MET B 89 SITE 2 AC3 10 CYS B 137 ILE B 141 PHE B 168 VAL B 171 SITE 3 AC3 10 ILE B 175 G50 B1211 CRYST1 47.221 230.614 43.942 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021177 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022757 0.00000