HEADER HYDROLASE 02-APR-07 2UXY TITLE ALIPHATIC AMIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALIPHATIC AMIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-341; COMPND 5 SYNONYM: ACYLAMIDE AMIDOHYDROLASE; COMPND 6 EC: 3.5.1.4; COMPND 7 OTHER_DETAILS: AN ACYL REACTION INTERMEDIATE WAS FOUND BOUNT TO SG OF COMPND 8 CYS166 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287 KEYWDS NITRILASE SUPERFAMILY, PSEUDOMONAS AERUGINOSA, HYDROLASE, ACYL KEYWDS 2 TRANSFER, THIOL ENZYMES, HYDROXAMIC ACID, ALIPHATIC AMIDASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ANDRADE,A.KARMALI,M.A.CARRONDO,C.FRAZAO REVDAT 4 08-MAY-19 2UXY 1 REMARK LINK REVDAT 3 24-FEB-09 2UXY 1 VERSN REVDAT 2 10-JUL-07 2UXY 1 JRNL REVDAT 1 17-APR-07 2UXY 0 JRNL AUTH J.ANDRADE,A.KARMALI,M.A.CARRONDO,C.FRAZAO JRNL TITL STRUCTURE OF AMIDASE FROM PSEUDOMONAS AERUGINOSA SHOWING A JRNL TITL 2 TRAPPED ACYL TRANSFER REACTION INTERMEDIATE STATE. JRNL REF J.BIOL.CHEM. V. 282 19598 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17442671 JRNL DOI 10.1074/JBC.M701039200 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 1.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 51.5 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.111 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.111 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.136 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1744 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 115216 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.101 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.101 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.127 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 101766 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2661 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2968.5 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 2538.8 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 28 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 27871 REMARK 3 NUMBER OF RESTRAINTS : 35602 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 ANGLE DISTANCES (A) : 0.030 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.032 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.080 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.083 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.131 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.043 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.099 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER DICTIONARY WAS REMARK 3 SETUP ASSUMING A SP3 REMARK 3 HYBRIDIZATION ON THE CENTRAL REMARK 3 CARBON WITH A SINGLE BOND TO ITS REMARK 3 NEIGHBORING OXYGEN REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2UXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-07. REMARK 100 THE DEPOSITION ID IS D_1290031972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9756 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115216 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 42.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXCD, SHELXD, SHELXE IN HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION IN SITTING DROPS OF 5 REMARK 280 MICRO-L OF 25 MG/ML PROTEIN SOLUTION IN 50 MM TRIS-HCL PH 7.2, 5 REMARK 280 MM DTT AND 1 MM EDTA, PLUS 2 MICRO-L OF WELL SOLUTION 15% PEG 4K REMARK 280 AND 0.2M AMMONIUM SULPHATE PH 6.8, PH 6.80, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.66000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.66000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.66000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.66000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.66000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.66000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.66000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 51.35300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 88.94601 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 102.70600 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 -0.866025 0.000000 51.35300 REMARK 350 BIOMT2 5 -0.866025 -0.500000 0.000000 88.94601 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 75.66000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 102.70600 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 75.66000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2001 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2108 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2236 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 313 NH2 ARG A 316 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 GLN A 47 CB - CG - CD ANGL. DEV. = 15.8 DEGREES REMARK 500 MET A 72 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 89 NH1 - CZ - NH2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 198 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 MET A 202 CG - SD - CE ANGL. DEV. = 11.4 DEGREES REMARK 500 CYS A 213 CA - CB - SG ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 241 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 282 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 294 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 295 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 295 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 306 CD - NE - CZ ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG A 306 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 316 CD - NE - CZ ANGL. DEV. = 36.3 DEGREES REMARK 500 ARG A 321 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 321 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 26 -8.66 -140.72 REMARK 500 C3Y A 166 -111.78 40.46 REMARK 500 ALA A 196 49.74 -82.71 REMARK 500 VAL A 226 -55.83 -123.70 REMARK 500 GLN A 271 -64.47 -126.68 REMARK 500 ASP A 311 68.84 -155.20 REMARK 500 THR A 323 -91.51 -129.18 REMARK 500 CYS A 332 70.91 -159.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2006 DISTANCE = 6.80 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1343 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K17 RELATED DB: PDB REMARK 900 ALIPHATIC AMIDASE (EC 3.5.1.4) REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN ACYL TRANSFER REACTION INERMEDIATE IS COVALENTLY BOUND REMARK 999 TO SG ATOM OF CYS166 DBREF 2UXY A 1 341 UNP P11436 AMIE_PSEAE 1 341 SEQRES 1 A 341 MET ARG HIS GLY ASP ILE SER SER SER ASN ASP THR VAL SEQRES 2 A 341 GLY VAL ALA VAL VAL ASN TYR LYS MET PRO ARG LEU HIS SEQRES 3 A 341 THR ALA ALA GLU VAL LEU ASP ASN ALA ARG LYS ILE ALA SEQRES 4 A 341 GLU MET ILE VAL GLY MET LYS GLN GLY LEU PRO GLY MET SEQRES 5 A 341 ASP LEU VAL VAL PHE PRO GLU TYR SER LEU GLN GLY ILE SEQRES 6 A 341 MET TYR ASP PRO ALA GLU MET MET GLU THR ALA VAL ALA SEQRES 7 A 341 ILE PRO GLY GLU GLU THR GLU ILE PHE SER ARG ALA CYS SEQRES 8 A 341 ARG LYS ALA ASN VAL TRP GLY VAL PHE SER LEU THR GLY SEQRES 9 A 341 GLU ARG HIS GLU GLU HIS PRO ARG LYS ALA PRO TYR ASN SEQRES 10 A 341 THR LEU VAL LEU ILE ASP ASN ASN GLY GLU ILE VAL GLN SEQRES 11 A 341 LYS TYR ARG LYS ILE ILE PRO TRP CYS PRO ILE GLU GLY SEQRES 12 A 341 TRP TYR PRO GLY GLY GLN THR TYR VAL SER GLU GLY PRO SEQRES 13 A 341 LYS GLY MET LYS ILE SER LEU ILE ILE C3Y ASP ASP GLY SEQRES 14 A 341 ASN TYR PRO GLU ILE TRP ARG ASP CYS ALA MET LYS GLY SEQRES 15 A 341 ALA GLU LEU ILE VAL ARG CYS GLN GLY TYR MET TYR PRO SEQRES 16 A 341 ALA LYS ASP GLN GLN VAL MET MET ALA LYS ALA MET ALA SEQRES 17 A 341 TRP ALA ASN ASN CYS TYR VAL ALA VAL ALA ASN ALA ALA SEQRES 18 A 341 GLY PHE ASP GLY VAL TYR SER TYR PHE GLY HIS SER ALA SEQRES 19 A 341 ILE ILE GLY PHE ASP GLY ARG THR LEU GLY GLU CYS GLY SEQRES 20 A 341 GLU GLU GLU MET GLY ILE GLN TYR ALA GLN LEU SER LEU SEQRES 21 A 341 SER GLN ILE ARG ASP ALA ARG ALA ASN ASP GLN SER GLN SEQRES 22 A 341 ASN HIS LEU PHE LYS ILE LEU HIS ARG GLY TYR SER GLY SEQRES 23 A 341 LEU GLN ALA SER GLY ASP GLY ASP ARG GLY LEU ALA GLU SEQRES 24 A 341 CYS PRO PHE GLU PHE TYR ARG THR TRP VAL THR ASP ALA SEQRES 25 A 341 GLU LYS ALA ARG GLU ASN VAL GLU ARG LEU THR ARG SER SEQRES 26 A 341 THR THR GLY VAL ALA GLN CYS PRO VAL GLY ARG LEU PRO SEQRES 27 A 341 TYR GLU GLY MODRES 2UXY C3Y A 166 CYS HET C3Y A 166 12 HET SO4 A1343 5 HETNAM C3Y S-[(1S)-1-HYDROXY-1-(HYDROXYAMINO)ETHYL]-L-CYSTEINE HETNAM SO4 SULFATE ION FORMUL 1 C3Y C5 H12 N2 O4 S FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *305(H2 O) HELIX 1 1 THR A 27 LEU A 49 1 23 HELIX 2 2 ASP A 68 ALA A 76 1 9 HELIX 3 3 GLY A 81 ASN A 95 1 15 HELIX 4 4 PRO A 156 GLY A 158 5 3 HELIX 5 5 ASP A 167 ASN A 170 5 4 HELIX 6 6 TYR A 171 LYS A 181 1 11 HELIX 7 7 ALA A 196 ASN A 212 1 17 HELIX 8 8 LEU A 260 ASP A 270 1 11 HELIX 9 9 ASN A 274 ILE A 279 1 6 HELIX 10 10 GLY A 283 SER A 290 1 8 HELIX 11 11 PHE A 302 ASP A 311 1 10 HELIX 12 12 ASP A 311 THR A 323 1 13 SHEET 1 AA 6 ILE A 128 ARG A 133 0 SHEET 2 AA 6 TYR A 116 ILE A 122 -1 O LEU A 119 N TYR A 132 SHEET 3 AA 6 TRP A 97 GLU A 105 -1 O GLY A 98 N ILE A 122 SHEET 4 AA 6 MET A 52 VAL A 56 1 O ASP A 53 N TRP A 97 SHEET 5 AA 6 THR A 12 VAL A 18 1 O GLY A 14 N ASP A 53 SHEET 6 AA 6 ILE A 253 SER A 259 -1 O GLN A 254 N VAL A 17 SHEET 1 AB 6 SER A 153 GLU A 154 0 SHEET 2 AB 6 LYS A 160 ILE A 165 -1 O ILE A 161 N SER A 153 SHEET 3 AB 6 LEU A 185 GLN A 190 1 O LEU A 185 N SER A 162 SHEET 4 AB 6 TYR A 214 ASN A 219 1 O TYR A 214 N ILE A 186 SHEET 5 AB 6 ALA A 234 ILE A 236 -1 O ALA A 234 N VAL A 217 SHEET 6 AB 6 THR A 242 GLU A 245 -1 N LEU A 243 O ILE A 235 SHEET 1 AC 2 ALA A 221 PHE A 223 0 SHEET 2 AC 2 SER A 228 PHE A 230 -1 O TYR A 229 N GLY A 222 LINK C ILE A 165 N C3Y A 166 1555 1555 1.34 LINK C C3Y A 166 N ASP A 167 1555 1555 1.32 CISPEP 1 ILE A 79 PRO A 80 0 -5.19 CISPEP 2 THR A 103 GLY A 104 0 8.96 CISPEP 3 HIS A 110 PRO A 111 0 2.32 CISPEP 4 CYS A 139 PRO A 140 0 7.34 CISPEP 5 TYR A 194 PRO A 195 0 18.69 SITE 1 AC1 4 ARG A 36 ARG A 89 HOH A2304 HOH A2305 CRYST1 102.706 102.706 151.320 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009737 0.005621 0.000000 0.00000 SCALE2 0.000000 0.011243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006609 0.00000