HEADER TRANSFERASE 11-APR-07 2UYQ TITLE CRYSTAL STRUCTURE OF ML2640C FROM MYCOBACTERIUM LEPRAE IN COMPLEX WITH TITLE 2 S-ADENOSYLMETHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN ML2640; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METHYLTRANSFERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM LEPRAE; SOURCE 3 ORGANISM_TAXID: 1769; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PDEST17 KEYWDS HYPOTHETICAL PROTEIN, PUTATIVE METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GRANA,A.BUSCHIAZZO,A.WEHENKEL,A.HAOUZ,I.MIRAS,W.SHEPARD,P.M.ALZARI REVDAT 5 13-DEC-23 2UYQ 1 REMARK REVDAT 4 13-JUL-11 2UYQ 1 VERSN REVDAT 3 24-FEB-09 2UYQ 1 VERSN REVDAT 2 11-SEP-07 2UYQ 1 JRNL REVDAT 1 07-AUG-07 2UYQ 0 JRNL AUTH M.GRANA,A.HAOUZ,A.BUSCHIAZZO,I.MIRAS,A.WEHENKEL,V.BONDET, JRNL AUTH 2 W.SHEPARD,F.SCHAEFFER,S.T.COLE,P.M.ALZARI JRNL TITL THE CRYSTAL STRUCTURE OF M. LEPRAE ML2640C DEFINES A LARGE JRNL TITL 2 FAMILY OF PUTATIVE S-ADENOSYLMETHIONINE- DEPENDENT JRNL TITL 3 METHYLTRANSFERASES IN MYCOBACTERIA. JRNL REF PROTEIN SCI. V. 16 1896 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17660248 JRNL DOI 10.1110/PS.072982707 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1605 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2242 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2041 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.475 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2106 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2884 ; 1.560 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 5.283 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;27.062 ;22.283 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 279 ;12.293 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;11.851 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1650 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 902 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1428 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 215 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1399 ; 0.975 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2151 ; 1.432 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 836 ; 2.285 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 733 ; 3.346 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8905 -31.7074 -1.8020 REMARK 3 T TENSOR REMARK 3 T11: -0.1542 T22: -0.1332 REMARK 3 T33: -0.1655 T12: 0.0082 REMARK 3 T13: 0.0118 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.4706 L22: 1.8481 REMARK 3 L33: 1.6178 L12: -0.5364 REMARK 3 L13: 1.0434 L23: 0.1508 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: 0.2279 S13: 0.0869 REMARK 3 S21: -0.1895 S22: -0.0751 S23: -0.0250 REMARK 3 S31: -0.0962 S32: 0.1114 S33: 0.0362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2UYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-07. REMARK 100 THE DEPOSITION ID IS D_1290032245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9756 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31844 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2CKD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SODIUM CITRATE, 100 MM BICINE, REMARK 280 PH 9 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.43667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.21833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.82750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 17.60917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.04583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 HIS A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 6 REMARK 465 THR A 7 REMARK 465 TRP A 8 REMARK 465 ASP A 9 REMARK 465 ILE A 10 REMARK 465 LYS A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 LEU A 58 REMARK 465 ASP A 59 REMARK 465 PRO A 60 REMARK 465 SER A 61 REMARK 465 MET A 62 REMARK 465 VAL A 63 REMARK 465 ALA A 64 REMARK 465 LYS A 65 REMARK 465 VAL A 66 REMARK 465 GLU A 67 REMARK 465 ALA A 68 REMARK 465 ILE A 69 REMARK 465 LEU A 241 REMARK 465 GLY A 242 REMARK 465 PHE A 243 REMARK 465 GLU A 244 REMARK 465 GLN A 245 REMARK 465 ALA A 246 REMARK 465 VAL A 247 REMARK 465 ASP A 248 REMARK 465 VAL A 249 REMARK 465 GLN A 250 REMARK 465 GLU A 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 20 CG SD CE REMARK 470 LEU A 53 CG CD1 CD2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 MET A 57 CG SD CE REMARK 470 MET A 76 CG SD CE REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 TRP A 226 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 226 CZ3 CH2 REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 GLN A 229 CG CD OE1 NE2 REMARK 470 MET A 230 CG SD CE REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 LEU A 232 CG CD1 CD2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 234 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 235 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 237 CG1 CG2 REMARK 470 SER A 238 OG REMARK 470 ASP A 239 CG OD1 OD2 REMARK 470 MET A 294 CG SD CE REMARK 470 ASP A 296 CG OD1 OD2 REMARK 470 ASP A 297 CG OD1 OD2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 70 CB ASP A 70 CG 0.186 REMARK 500 GLU A 72 CG GLU A 72 CD 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 43 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 188 -53.36 -121.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SAM A 1311 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A1311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CKD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ML2640 FROM MYCOBACTERIUM LEPRAE REMARK 900 RELATED ID: 2UYO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ML2640C FROM MYCOBACTERIUM LEPRAE IN AN REMARK 900 HEXAGONAL CRYSTAL FORM DBREF 2UYQ A 1 310 UNP Q9CCZ4 Q9CCZ4_MYCLE 1 310 SEQRES 1 A 310 MET ARG THR HIS ASP ASP THR TRP ASP ILE LYS THR SER SEQRES 2 A 310 VAL GLY THR THR ALA VAL MET VAL ALA ALA ALA ARG ALA SEQRES 3 A 310 ALA GLU THR ASP ARG PRO ASP ALA LEU ILE ARG ASP PRO SEQRES 4 A 310 TYR ALA LYS LEU LEU VAL THR ASN THR GLY ALA GLY ALA SEQRES 5 A 310 LEU TRP GLU ALA MET LEU ASP PRO SER MET VAL ALA LYS SEQRES 6 A 310 VAL GLU ALA ILE ASP ALA GLU ALA ALA ALA MET VAL GLU SEQRES 7 A 310 HIS MET ARG SER TYR GLN ALA VAL ARG THR ASN PHE PHE SEQRES 8 A 310 ASP THR TYR PHE ASN ASN ALA VAL ILE ASP GLY ILE ARG SEQRES 9 A 310 GLN PHE VAL ILE LEU ALA SER GLY LEU ASP SER ARG ALA SEQRES 10 A 310 TYR ARG LEU ASP TRP PRO THR GLY THR THR VAL TYR GLU SEQRES 11 A 310 ILE ASP GLN PRO LYS VAL LEU ALA TYR LYS SER THR THR SEQRES 12 A 310 LEU ALA GLU HIS GLY VAL THR PRO THR ALA ASP ARG ARG SEQRES 13 A 310 GLU VAL PRO ILE ASP LEU ARG GLN ASP TRP PRO PRO ALA SEQRES 14 A 310 LEU ARG SER ALA GLY PHE ASP PRO SER ALA ARG THR ALA SEQRES 15 A 310 TRP LEU ALA GLU GLY LEU LEU MET TYR LEU PRO ALA THR SEQRES 16 A 310 ALA GLN ASP GLY LEU PHE THR GLU ILE GLY GLY LEU SER SEQRES 17 A 310 ALA VAL GLY SER ARG ILE ALA VAL GLU THR SER PRO LEU SEQRES 18 A 310 HIS GLY ASP GLU TRP ARG GLU GLN MET GLN LEU ARG PHE SEQRES 19 A 310 ARG ARG VAL SER ASP ALA LEU GLY PHE GLU GLN ALA VAL SEQRES 20 A 310 ASP VAL GLN GLU LEU ILE TYR HIS ASP GLU ASN ARG ALA SEQRES 21 A 310 VAL VAL ALA ASP TRP LEU ASN ARG HIS GLY TRP ARG ALA SEQRES 22 A 310 THR ALA GLN SER ALA PRO ASP GLU MET ARG ARG VAL GLY SEQRES 23 A 310 ARG TRP GLY ASP GLY VAL PRO MET ALA ASP ASP LYS ASP SEQRES 24 A 310 ALA PHE ALA GLU PHE VAL THR ALA HIS ARG LEU HET SAM A1311 17 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 HOH *239(H2 O) HELIX 1 1 GLY A 15 ASP A 30 1 16 HELIX 2 2 TYR A 40 ASN A 47 1 8 HELIX 3 3 ALA A 50 MET A 57 1 8 HELIX 4 4 ASP A 70 ASP A 101 1 32 HELIX 5 5 SER A 115 LEU A 120 1 6 HELIX 6 6 GLN A 133 HIS A 147 1 15 HELIX 7 7 TRP A 166 ALA A 173 1 8 HELIX 8 8 LEU A 188 LEU A 192 5 5 HELIX 9 9 PRO A 193 LEU A 207 1 15 HELIX 10 10 ASP A 224 ALA A 240 1 17 HELIX 11 11 VAL A 261 ASN A 267 1 7 HELIX 12 12 ALA A 278 VAL A 285 1 8 HELIX 13 13 ASP A 297 PHE A 301 5 5 SHEET 1 AA 7 ASP A 154 PRO A 159 0 SHEET 2 AA 7 THR A 127 ASP A 132 1 O VAL A 128 N ARG A 156 SHEET 3 AA 7 GLN A 105 LEU A 109 1 O PHE A 106 N TYR A 129 SHEET 4 AA 7 THR A 181 ALA A 185 1 O ALA A 182 N VAL A 107 SHEET 5 AA 7 ARG A 213 GLU A 217 1 O ARG A 213 N TRP A 183 SHEET 6 AA 7 GLU A 303 ARG A 309 -1 O VAL A 305 N VAL A 216 SHEET 7 AA 7 TRP A 271 SER A 277 -1 O ARG A 272 N HIS A 308 SITE 1 AC1 7 ALA A 110 GLY A 112 ASP A 132 ASP A 161 SITE 2 AC1 7 LEU A 162 ARG A 163 HOH A2239 CRYST1 75.826 75.826 105.655 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013188 0.007614 0.000000 0.00000 SCALE2 0.000000 0.015228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009465 0.00000