HEADER GLYCOPROTEIN 20-APR-07 2UYW TITLE CRYSTAL STRUCTURE OF XENAVIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: XENAVIDIN; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS TROPICALIS; SOURCE 3 ORGANISM_COMMON: WESTERN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8364; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS AVIDIN, BETA-BARREL, BIOTIN-BINDING PROTEIN, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.H.HELPPOLAINEN,J.A.E.MAATTA,T.T.AIRENNE,M.S.JOHNSON,M.S.KULOMAA, AUTHOR 2 H.R.NORDLUND REVDAT 5 13-DEC-23 2UYW 1 REMARK REVDAT 4 13-JUL-11 2UYW 1 VERSN REVDAT 3 13-OCT-09 2UYW 1 SOURCE JRNL REMARK REVDAT 2 24-FEB-09 2UYW 1 VERSN REVDAT 1 27-MAY-08 2UYW 0 JRNL AUTH J.A.E.MAATTA,S.H.HELPPOLAINEN,V.P.HYTONEN,M.S.JOHNSON, JRNL AUTH 2 M.S.KULOMAA,T.T.AIRENNE,H.R.NORDLUND JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERISTICS OF XENAVIDIN, THE JRNL TITL 2 FIRST FROG AVIDIN FROM XENOPUS TROPICALIS. JRNL REF BMC STRUCT.BIOL. V. 9 63 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19788720 JRNL DOI 10.1186/1472-6807-9-63 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0021 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1871 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2616 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1911 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.128 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2064 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2801 ; 1.538 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 6.777 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;34.457 ;24.526 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;13.866 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1536 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 874 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1385 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 185 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1261 ; 0.969 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1969 ; 1.441 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 937 ; 2.156 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 821 ; 3.257 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0070 24.6990 58.6890 REMARK 3 T TENSOR REMARK 3 T11: -0.1580 T22: -0.0659 REMARK 3 T33: -0.0881 T12: -0.0015 REMARK 3 T13: -0.0308 T23: 0.1071 REMARK 3 L TENSOR REMARK 3 L11: 0.9418 L22: 2.7459 REMARK 3 L33: 3.0380 L12: -0.3025 REMARK 3 L13: -0.0337 L23: -1.2317 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: -0.0227 S13: -0.0007 REMARK 3 S21: 0.1967 S22: -0.2973 S23: -0.5583 REMARK 3 S31: 0.0242 S32: 0.5409 S33: 0.3631 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 123 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8280 21.0220 55.0280 REMARK 3 T TENSOR REMARK 3 T11: -0.1552 T22: -0.1667 REMARK 3 T33: -0.2115 T12: 0.0052 REMARK 3 T13: 0.0135 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.0705 L22: 2.3478 REMARK 3 L33: 2.1634 L12: 0.2134 REMARK 3 L13: 0.1198 L23: -1.1625 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: -0.0012 S13: 0.0234 REMARK 3 S21: -0.0495 S22: 0.0036 S23: 0.0483 REMARK 3 S31: 0.0987 S32: -0.1992 S33: -0.0209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2UYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-07. REMARK 100 THE DEPOSITION ID IS D_1290032310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37484 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1WBI REMARK 200 REMARK 200 REMARK: AN UNPUBLISHED DATA SET COLLECTED AT THE MAX-LAB BEAM LINE REMARK 200 I911 IN JUNE 2006 WAS USED TO SOLVE THE STRUCTURE OF XENAVIDIN. REMARK 200 THE DATA REPORTED HERE WAS USED TO EXTEND THE RESOLUTION AND REMARK 200 BUILD THE FINAL MODEL. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.42650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.00050 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.92600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.42650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.00050 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.92600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.42650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.00050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.92600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.42650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.00050 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.92600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.42650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.00050 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.92600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.42650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.00050 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.92600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.00101 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 95.85200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 64.00101 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 95.85200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 64.00101 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 95.85200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 64.00101 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 95.85200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 64.00101 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 95.85200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 64.00101 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 95.85200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 64.00101 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 95.85200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 SER A 123 REMARK 465 LYS A 124 REMARK 465 LYS A 125 REMARK 465 LYS A 126 REMARK 465 ILE A 127 REMARK 465 ARG A 128 REMARK 465 LYS A 129 REMARK 465 GLU A 130 REMARK 465 THR D 1 REMARK 465 GLU D 2 REMARK 465 ALA D 3 REMARK 465 GLN D 4 REMARK 465 LYS D 124 REMARK 465 LYS D 125 REMARK 465 LYS D 126 REMARK 465 ILE D 127 REMARK 465 ARG D 128 REMARK 465 LYS D 129 REMARK 465 GLU D 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 87 CD LYS A 87 CE 0.233 REMARK 500 LYS A 87 CE LYS A 87 NZ 0.182 REMARK 500 GLY A 88 C GLU A 89 N 0.156 REMARK 500 GLU A 89 CD GLU A 89 OE1 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 32.61 -149.29 REMARK 500 ASN A 85 -173.34 -66.86 REMARK 500 LEU D 57 56.62 -98.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "DA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN A 1123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN D 1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 1127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT D 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1127 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DNA SEQUENCE FOR EXPRESSION ORIGINATED FROM AN EST PROJECT REMARK 999 OF XENOPUS:XENAVIDIN CDNA (GENBANK ACC: CF523241) DBREF 2UYW A 1 130 PDB 2UYW 2UYW 1 130 DBREF 2UYW D 1 130 PDB 2UYW 2UYW 1 130 SEQRES 1 A 130 THR GLU ALA GLN LYS CYS ASN LEU GLN GLY GLN TRP ARG SEQRES 2 A 130 ASN LYS LEU GLY SER ASN LEU ILE ILE GLU SER VAL SER SEQRES 3 A 130 GLN ASN GLY GLU PHE THR GLY THR TYR PHE THR SER VAL SEQRES 4 A 130 SER LEU THR ASN SER THR ILE ARG ILE SER PRO LEU THR SEQRES 5 A 130 GLY TYR GLN LYS LEU THR GLU LYS PRO THR PHE GLY PHE SEQRES 6 A 130 THR VAL HIS TRP ALA PHE SER ASP SER ILE THR VAL TRP SEQRES 7 A 130 THR GLY GLN CYS PHE LEU ASN GLU LYS GLY GLU GLU ILE SEQRES 8 A 130 LEU HIS THR MET TRP LEU LEU ARG SER SER GLN GLU LYS SEQRES 9 A 130 GLU GLN ASP ASN TRP THR GLY THR ARG VAL GLY ALA ASN SEQRES 10 A 130 THR PHE THR ARG LEU SER LYS LYS LYS ILE ARG LYS GLU SEQRES 1 D 130 THR GLU ALA GLN LYS CYS ASN LEU GLN GLY GLN TRP ARG SEQRES 2 D 130 ASN LYS LEU GLY SER ASN LEU ILE ILE GLU SER VAL SER SEQRES 3 D 130 GLN ASN GLY GLU PHE THR GLY THR TYR PHE THR SER VAL SEQRES 4 D 130 SER LEU THR ASN SER THR ILE ARG ILE SER PRO LEU THR SEQRES 5 D 130 GLY TYR GLN LYS LEU THR GLU LYS PRO THR PHE GLY PHE SEQRES 6 D 130 THR VAL HIS TRP ALA PHE SER ASP SER ILE THR VAL TRP SEQRES 7 D 130 THR GLY GLN CYS PHE LEU ASN GLU LYS GLY GLU GLU ILE SEQRES 8 D 130 LEU HIS THR MET TRP LEU LEU ARG SER SER GLN GLU LYS SEQRES 9 D 130 GLU GLN ASP ASN TRP THR GLY THR ARG VAL GLY ALA ASN SEQRES 10 D 130 THR PHE THR ARG LEU SER LYS LYS LYS ILE ARG LYS GLU HET BTN A1123 16 HET FMT A1124 3 HET FMT A1125 3 HET FMT A1126 3 HET FMT A1127 3 HET FMT A1128 3 HET BTN D1124 16 HET FMT D1125 3 HET FMT D1126 3 HET FMT D1127 3 HET FMT D1128 3 HET FMT D1129 3 HETNAM BTN BIOTIN HETNAM FMT FORMIC ACID FORMUL 3 BTN 2(C10 H16 N2 O3 S) FORMUL 4 FMT 10(C H2 O2) FORMUL 15 HOH *224(H2 O) HELIX 1 1 LYS A 104 THR A 110 5 7 HELIX 2 2 LYS D 104 THR D 110 5 7 SHEET 1 AA10 GLY A 10 ASN A 14 0 SHEET 2 AA10 ASN A 19 ILE A 22 -1 O LEU A 20 N TRP A 12 SHEET 3 AA10 GLU A 30 PHE A 36 -1 O THR A 34 N ILE A 21 SHEET 4 AA10 SER A 49 GLN A 55 -1 O SER A 49 N TYR A 35 SHEET 5 AA10 THR A 62 HIS A 68 -1 O GLY A 64 N TYR A 54 SHEET 6 AA10 ILE A 75 LEU A 84 -1 O THR A 76 N VAL A 67 SHEET 7 AA10 GLU A 90 ARG A 99 -1 O ILE A 91 N PHE A 83 SHEET 8 AA10 THR A 112 ARG A 121 -1 O ARG A 113 N LEU A 98 SHEET 9 AA10 GLY A 10 ASN A 14 -1 O ARG A 13 N THR A 120 SHEET 10 AA10 GLY A 10 ASN A 14 0 SHEET 1 DA10 GLY D 10 ASN D 14 0 SHEET 2 DA10 ASN D 19 VAL D 25 -1 O LEU D 20 N TRP D 12 SHEET 3 DA10 GLU D 30 PHE D 36 -1 O THR D 32 N GLU D 23 SHEET 4 DA10 SER D 49 GLN D 55 -1 O SER D 49 N TYR D 35 SHEET 5 DA10 THR D 62 HIS D 68 -1 O GLY D 64 N TYR D 54 SHEET 6 DA10 ILE D 75 LEU D 84 -1 O THR D 76 N VAL D 67 SHEET 7 DA10 GLU D 90 ARG D 99 -1 O ILE D 91 N PHE D 83 SHEET 8 DA10 THR D 112 THR D 120 -1 O ARG D 113 N LEU D 98 SHEET 9 DA10 GLY D 10 ASN D 14 -1 O ARG D 13 N THR D 120 SHEET 10 DA10 GLY D 10 ASN D 14 0 SSBOND 1 CYS A 6 CYS A 82 1555 1555 2.07 SSBOND 2 CYS D 6 CYS D 82 1555 1555 2.04 SITE 1 AC1 16 ASN A 14 LEU A 16 SER A 18 TYR A 35 SITE 2 AC1 16 THR A 37 VAL A 39 SER A 40 LEU A 41 SITE 3 AC1 16 TRP A 69 SER A 72 SER A 74 THR A 76 SITE 4 AC1 16 TRP A 96 ASN A 117 HOH A2066 TRP D 109 SITE 1 AC2 17 TRP A 109 ASN D 14 LEU D 16 SER D 18 SITE 2 AC2 17 TYR D 35 THR D 37 VAL D 39 SER D 40 SITE 3 AC2 17 LEU D 41 TRP D 69 SER D 72 SER D 74 SITE 4 AC2 17 THR D 76 TRP D 96 ASN D 117 HOH D2045 SITE 5 AC2 17 HOH D2111 SITE 1 AC3 7 ASN D 14 LYS D 15 ALA D 116 ASN D 117 SITE 2 AC3 7 THR D 118 HOH D2112 HOH D2113 SITE 1 AC4 7 ASN A 14 LYS A 15 ALA A 116 ASN A 117 SITE 2 AC4 7 THR A 118 HOH A2096 HOH A2099 SITE 1 AC5 4 HIS A 68 LEU D 57 HOH D2115 HOH D2116 SITE 1 AC6 5 SER D 100 GLN D 102 ARG D 113 HOH D2117 SITE 2 AC6 5 HOH D2118 SITE 1 AC7 7 GLU A 105 GLN A 106 ASN A 108 TRP A 109 SITE 2 AC7 7 HOH A2100 HOH A2101 LEU D 16 SITE 1 AC8 6 GLY A 115 ALA A 116 HOH A2074 HOH A2104 SITE 2 AC8 6 HOH A2105 HOH A2106 SITE 1 AC9 5 SER D 24 VAL D 25 SER D 26 GLU D 30 SITE 2 AC9 5 PHE D 31 SITE 1 BC1 6 LEU A 16 GLU D 105 GLN D 106 ASN D 108 SITE 2 BC1 6 TRP D 109 HOH D2097 SITE 1 BC2 5 VAL A 39 SER A 40 THR A 42 HOH A2102 SITE 2 BC2 5 HOH D2099 SITE 1 BC3 5 SER A 100 GLN A 102 ARG A 113 HOH A2093 SITE 2 BC3 5 HOH A2103 CRYST1 110.853 110.853 143.778 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009021 0.005208 0.000000 0.00000 SCALE2 0.000000 0.010417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006955 0.00000 MTRIX1 1 -0.999920 0.001760 0.012910 1.38317 1 MTRIX2 1 -0.012910 0.002190 -0.999910 79.82504 1 MTRIX3 1 -0.001790 -1.000000 -0.002160 79.99029 1