HEADER GLYCOPROTEIN 24-APR-07 2UZ2 TITLE CRYSTAL STRUCTURE OF XENAVIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: XENAVIDIN; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS TROPICALIS; SOURCE 3 ORGANISM_COMMON: WESTERN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8364; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS BETA-BARREL, BIOTIN-BINDING PROTEIN, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.H.HELPPOLAINEN,J.A.E.MAATTA,T.T.AIRENNE,M.S.JOHNSON,M.S.KULOMAA, AUTHOR 2 H.R.NORDLUND REVDAT 5 28-JUN-17 2UZ2 1 REMARK REVDAT 4 13-JUL-11 2UZ2 1 VERSN REVDAT 3 13-OCT-09 2UZ2 1 SOURCE JRNL REMARK REVDAT 2 24-FEB-09 2UZ2 1 VERSN REVDAT 1 03-JUN-08 2UZ2 0 JRNL AUTH J.A.E.MAATTA,S.H.HELPPOLAINEN,V.P.HYTONEN,M.S.JOHNSON, JRNL AUTH 2 M.S.KULOMAA,T.T.AIRENNE,H.R.NORDLUND JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERISTICS OF XENAVIDIN, THE JRNL TITL 2 FIRST FROG AVIDIN FROM XENOPUS TROPICALIS. JRNL REF BMC STRUCT.BIOL. V. 9 63 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19788720 JRNL DOI 10.1186/1472-6807-9-63 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0021 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1852 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2594 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1883 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 5.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 0.81000 REMARK 3 B12 (A**2) : -0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.523 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2084 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2861 ; 1.522 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 6.765 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;36.173 ;24.490 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;14.539 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.925 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1589 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 933 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1437 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 0.744 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2032 ; 1.202 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 947 ; 1.864 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 808 ; 2.915 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7250 24.7300 58.1140 REMARK 3 T TENSOR REMARK 3 T11: -0.0961 T22: -0.0586 REMARK 3 T33: -0.1688 T12: -0.0001 REMARK 3 T13: -0.0203 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 1.3176 L22: 2.9023 REMARK 3 L33: 2.6969 L12: -0.4234 REMARK 3 L13: -0.0230 L23: -1.0246 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: -0.0844 S13: 0.0722 REMARK 3 S21: 0.1977 S22: -0.1266 S23: -0.5211 REMARK 3 S31: 0.0331 S32: 0.4280 S33: 0.1962 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 123 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5650 20.9040 54.2590 REMARK 3 T TENSOR REMARK 3 T11: -0.0977 T22: -0.1116 REMARK 3 T33: -0.2438 T12: 0.0087 REMARK 3 T13: 0.0051 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.0246 L22: 2.3732 REMARK 3 L33: 2.0378 L12: 0.5530 REMARK 3 L13: -0.0111 L23: -1.0409 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.0458 S13: 0.0375 REMARK 3 S21: -0.0551 S22: 0.0515 S23: 0.1405 REMARK 3 S31: 0.0873 S32: -0.2396 S33: -0.0631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 4 REMARK 4 2UZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-07. REMARK 100 THE DEPOSITION ID IS D_1290032340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.491 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: ARP/WARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: ARPWARP, STARTING FROM EXISTING MODEL, WAS USED TO BUILD REMARK 200 THE INITIAL MODEL. THE EXISTING MODEL WAS BUILT USING AN REMARK 200 UNPUBLISHED DATA SET COLLECTED AT THE MAX-LAB BEAM LINE I911 IN REMARK 200 JUNE 2006 AND IS RELATED TO PDB ENTRY 2UYW. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.40850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.99011 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.44633 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.40850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.99011 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.44633 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.40850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.99011 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.44633 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.40850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.99011 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.44633 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.40850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.99011 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.44633 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.40850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.99011 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.44633 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.98022 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 94.89267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 63.98022 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 94.89267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 63.98022 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 94.89267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 63.98022 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 94.89267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 63.98022 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 94.89267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 63.98022 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 94.89267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 63.98022 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 94.89267 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 THR A 42 REMARK 465 ASN A 43 REMARK 465 SER A 44 REMARK 465 THR A 45 REMARK 465 SER A 123 REMARK 465 LYS A 124 REMARK 465 LYS A 125 REMARK 465 LYS A 126 REMARK 465 ILE A 127 REMARK 465 ARG A 128 REMARK 465 LYS A 129 REMARK 465 GLU A 130 REMARK 465 THR D 1 REMARK 465 GLU D 2 REMARK 465 ALA D 3 REMARK 465 GLN D 4 REMARK 465 LYS D 124 REMARK 465 LYS D 125 REMARK 465 LYS D 126 REMARK 465 ILE D 127 REMARK 465 ARG D 128 REMARK 465 LYS D 129 REMARK 465 GLU D 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 23 O HOH A 2012 2.01 REMARK 500 ND2 ASN D 117 O HOH D 2107 2.14 REMARK 500 O HOH A 2023 O HOH A 2057 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 32.85 -140.28 REMARK 500 ASN D 7 90.36 62.20 REMARK 500 LEU D 57 53.00 -100.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "DA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTN D 1124 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UYW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF XENAVIDIN DBREF 2UZ2 A 1 130 PDB 2UZ2 2UZ2 1 130 DBREF 2UZ2 D 1 130 PDB 2UZ2 2UZ2 1 130 SEQRES 1 A 130 THR GLU ALA GLN LYS CYS ASN LEU GLN GLY GLN TRP ARG SEQRES 2 A 130 ASN LYS LEU GLY SER ASN LEU ILE ILE GLU SER VAL SER SEQRES 3 A 130 GLN ASN GLY GLU PHE THR GLY THR TYR PHE THR SER VAL SEQRES 4 A 130 SER LEU THR ASN SER THR ILE ARG ILE SER PRO LEU THR SEQRES 5 A 130 GLY TYR GLN LYS LEU THR GLU LYS PRO THR PHE GLY PHE SEQRES 6 A 130 THR VAL HIS TRP ALA PHE SER ASP SER ILE THR VAL TRP SEQRES 7 A 130 THR GLY GLN CYS PHE LEU ASN GLU LYS GLY GLU GLU ILE SEQRES 8 A 130 LEU HIS THR MET TRP LEU LEU ARG SER SER GLN GLU LYS SEQRES 9 A 130 GLU GLN ASP ASN TRP THR GLY THR ARG VAL GLY ALA ASN SEQRES 10 A 130 THR PHE THR ARG LEU SER LYS LYS LYS ILE ARG LYS GLU SEQRES 1 D 130 THR GLU ALA GLN LYS CYS ASN LEU GLN GLY GLN TRP ARG SEQRES 2 D 130 ASN LYS LEU GLY SER ASN LEU ILE ILE GLU SER VAL SER SEQRES 3 D 130 GLN ASN GLY GLU PHE THR GLY THR TYR PHE THR SER VAL SEQRES 4 D 130 SER LEU THR ASN SER THR ILE ARG ILE SER PRO LEU THR SEQRES 5 D 130 GLY TYR GLN LYS LEU THR GLU LYS PRO THR PHE GLY PHE SEQRES 6 D 130 THR VAL HIS TRP ALA PHE SER ASP SER ILE THR VAL TRP SEQRES 7 D 130 THR GLY GLN CYS PHE LEU ASN GLU LYS GLY GLU GLU ILE SEQRES 8 D 130 LEU HIS THR MET TRP LEU LEU ARG SER SER GLN GLU LYS SEQRES 9 D 130 GLU GLN ASP ASN TRP THR GLY THR ARG VAL GLY ALA ASN SEQRES 10 D 130 THR PHE THR ARG LEU SER LYS LYS LYS ILE ARG LYS GLU HET ACT A1123 4 HET BTN D1124 16 HETNAM ACT ACETATE ION HETNAM BTN BIOTIN FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 BTN C10 H16 N2 O3 S FORMUL 5 HOH *208(H2 O) HELIX 1 1 LYS A 104 THR A 110 5 7 HELIX 2 2 LYS D 104 THR D 110 5 7 SHEET 1 AA10 GLY A 10 ARG A 13 0 SHEET 2 AA10 ASN A 19 ILE A 22 -1 O LEU A 20 N TRP A 12 SHEET 3 AA10 GLU A 30 THR A 37 -1 O THR A 34 N ILE A 21 SHEET 4 AA10 ARG A 47 GLN A 55 -1 O ARG A 47 N THR A 37 SHEET 5 AA10 THR A 62 HIS A 68 -1 O GLY A 64 N TYR A 54 SHEET 6 AA10 ILE A 75 LEU A 84 -1 O THR A 76 N VAL A 67 SHEET 7 AA10 GLU A 90 ARG A 99 -1 O ILE A 91 N PHE A 83 SHEET 8 AA10 THR A 112 ARG A 121 -1 O ARG A 113 N LEU A 98 SHEET 9 AA10 GLY A 10 ARG A 13 -1 O ARG A 13 N THR A 120 SHEET 10 AA10 GLY A 10 ARG A 13 0 SHEET 1 DA10 GLY D 10 ASN D 14 0 SHEET 2 DA10 ASN D 19 VAL D 25 -1 O LEU D 20 N TRP D 12 SHEET 3 DA10 GLU D 30 PHE D 36 -1 O THR D 32 N GLU D 23 SHEET 4 DA10 SER D 49 GLN D 55 -1 O SER D 49 N TYR D 35 SHEET 5 DA10 THR D 62 HIS D 68 -1 O GLY D 64 N TYR D 54 SHEET 6 DA10 ILE D 75 LEU D 84 -1 O THR D 76 N VAL D 67 SHEET 7 DA10 GLU D 90 ARG D 99 -1 O ILE D 91 N PHE D 83 SHEET 8 DA10 THR D 112 ARG D 121 -1 O ARG D 113 N LEU D 98 SHEET 9 DA10 GLY D 10 ASN D 14 -1 O ARG D 13 N THR D 120 SHEET 10 DA10 GLY D 10 ASN D 14 0 SSBOND 1 CYS A 6 CYS A 82 1555 1555 2.49 SSBOND 2 CYS D 6 CYS D 82 1555 1555 2.75 SITE 1 AC1 7 ASN A 14 SER A 18 TYR A 35 THR A 37 SITE 2 AC1 7 VAL A 39 HOH A2023 HOH A2089 SITE 1 AC2 15 TRP A 109 ASN D 14 SER D 18 TYR D 35 SITE 2 AC2 15 THR D 37 VAL D 39 SER D 40 LEU D 41 SITE 3 AC2 15 THR D 42 TRP D 69 SER D 72 SER D 74 SITE 4 AC2 15 THR D 76 TRP D 96 HOH D2112 CRYST1 110.817 110.817 142.339 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009024 0.005210 0.000000 0.00000 SCALE2 0.000000 0.010420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007025 0.00000 MTRIX1 1 -0.999990 -0.002420 0.003370 2.21764 1 MTRIX2 1 -0.003420 0.020770 -0.999780 78.89062 1 MTRIX3 1 0.002350 -0.999780 -0.020770 80.49583 1