HEADER HYDROLASE 14-MAY-07 2V0E TITLE BRK DOMAIN FROM HUMAN CHD7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRK DOMAIN, RESIDUES 1799-1852; COMPND 5 SYNONYM: ATP- DEPENDENT HELICASE CHD7, CHD-7; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: MODIFIED PRSETA KEYWDS NUCLEOTIDE-BINDING, CHROMATIN REGULATOR, CHARGE SYNDROME, KEYWDS 2 PHOSPHORYLATION, DISEASE MUTATION, TRANSCRIPTION REGULATION, CHD7, KEYWDS 3 HELICASE, HYDROLASE, BRK DOMAIN, ATP-BINDING, DNA-BINDING, KEYWDS 4 TRANSCRIPTION, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.D.ALLEN,T.L.RELIGA,S.M.V.FREUND,M.BYCROFT REVDAT 7 24-JAN-18 2V0E 1 SOURCE REVDAT 6 19-APR-17 2V0E 1 REMARK REVDAT 5 24-FEB-09 2V0E 1 VERSN REVDAT 4 11-DEC-07 2V0E 1 ENDMDL REVDAT 3 21-AUG-07 2V0E 1 JRNL REVDAT 2 10-JUL-07 2V0E 1 JRNL REVDAT 1 22-MAY-07 2V0E 0 JRNL AUTH M.D.ALLEN,T.L.RELIGA,S.M.V.FREUND,M.BYCROFT JRNL TITL SOLUTION STRUCTURE OF THE BRK DOMAINS FROM CHD7 JRNL REF J.MOL.BIOL. V. 371 1135 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17603073 JRNL DOI 10.1016/J.JMB.2007.06.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 2V0E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1290032555. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O1.0MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN; NMRVIEW; AZARA AZARA, REMARK 210 ANSIG; CNS CNS REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 21 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A2562 92.67 -62.09 REMARK 500 1 ASP A2576 24.96 -140.88 REMARK 500 1 ASN A2588 -36.97 -20.54 REMARK 500 1 SER A2607 -60.77 -131.43 REMARK 500 1 TYR A2608 118.70 67.72 REMARK 500 1 LYS A2611 -48.05 72.04 REMARK 500 2 LEU A2563 94.42 -52.57 REMARK 500 2 ASP A2576 24.78 -140.88 REMARK 500 2 ASN A2588 -42.59 -15.47 REMARK 500 2 TYR A2608 115.80 64.07 REMARK 500 3 GLN A2562 111.26 66.90 REMARK 500 3 ASP A2564 152.54 -44.05 REMARK 500 3 ASP A2576 21.69 -140.66 REMARK 500 3 ASN A2588 -36.63 -19.90 REMARK 500 3 SER A2607 -28.93 177.86 REMARK 500 3 TYR A2608 152.02 -45.94 REMARK 500 3 LYS A2611 -17.79 82.11 REMARK 500 4 GLN A2562 -132.42 61.38 REMARK 500 4 ASP A2576 21.18 -140.79 REMARK 500 4 ASN A2588 -41.84 -16.98 REMARK 500 4 SER A2607 -69.21 -107.31 REMARK 500 4 TYR A2608 119.96 62.16 REMARK 500 4 LYS A2611 131.56 64.28 REMARK 500 5 GLN A2562 -148.12 -135.54 REMARK 500 5 ASP A2576 24.39 -140.77 REMARK 500 5 ASN A2588 -38.87 -18.15 REMARK 500 5 PRO A2606 49.00 -87.11 REMARK 500 5 SER A2607 -38.44 153.54 REMARK 500 5 TYR A2608 63.48 -57.03 REMARK 500 5 LYS A2611 -83.06 60.45 REMARK 500 5 ASN A2612 -44.31 -150.55 REMARK 500 5 ALA A2613 120.90 70.53 REMARK 500 6 GLN A2562 84.01 62.65 REMARK 500 6 ASP A2576 24.70 -140.95 REMARK 500 6 ASN A2588 -36.23 -21.29 REMARK 500 6 PRO A2606 61.18 -69.42 REMARK 500 6 SER A2607 -29.63 177.63 REMARK 500 7 ASP A2576 24.45 -140.87 REMARK 500 7 ASN A2588 -39.71 -17.50 REMARK 500 7 PRO A2606 42.58 -81.71 REMARK 500 7 SER A2607 -77.06 167.21 REMARK 500 7 TYR A2608 122.58 55.49 REMARK 500 8 GLN A2562 -123.08 59.76 REMARK 500 8 ASP A2576 24.52 -141.00 REMARK 500 8 ASN A2588 -39.12 -18.28 REMARK 500 8 ASN A2612 113.80 61.35 REMARK 500 9 GLN A2562 -172.72 58.22 REMARK 500 9 LEU A2563 92.20 -58.68 REMARK 500 9 ASP A2576 24.89 -140.90 REMARK 500 9 ASN A2588 -37.82 -18.83 REMARK 500 REMARK 500 THIS ENTRY HAS 116 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CKC RELATED DB: PDB REMARK 900 SOLUTION STRUCTURES OF THE BRK DOMAINS OF THE HUMAN CHROMO HELICASE REMARK 900 DOMAIN 7 AND 8 , REVEALS STRUCTURAL SIMILARITY WITH GYF DOMAIN REMARK 900 SUGGESTING A ROLE IN PROTEIN INTERACTION REMARK 900 RELATED ID: 2V0F RELATED DB: PDB REMARK 900 BRK DOMAIN FROM HUMAN CHD7 REMARK 999 REMARK 999 SEQUENCE REMARK 999 EAW86834 AND NP_060250 ARE TWO OTHER REFERENCES FOR THE SEQUENCE. REMARK 999 ALSO ENSP00000307304 WHICH IS AN ENSEMBL PROTEIN REPORT DBREF 2V0E A 2560 2560 PDB 2V0E 2V0E 2560 2560 DBREF 2V0E A 2561 2614 UNP Q9P2D1 CHD7_HUMAN 1799 1852 SEQRES 1 A 55 SER GLY GLN LEU ASP PRO ASP THR ARG ILE PRO VAL ILE SEQRES 2 A 55 ASN LEU GLU ASP GLY THR ARG LEU VAL GLY GLU ASP ALA SEQRES 3 A 55 PRO LYS ASN LYS ASP LEU VAL GLU TRP LEU LYS LEU HIS SEQRES 4 A 55 PRO THR TYR THR VAL ASP MET PRO SER TYR VAL PRO LYS SEQRES 5 A 55 ASN ALA ASP HELIX 1 1 VAL A 2581 ALA A 2585 5 5 HELIX 2 2 LYS A 2587 HIS A 2598 1 12 SHEET 1 AA 3 THR A2578 LEU A2580 0 SHEET 2 AA 3 VAL A2571 ASN A2573 -1 O VAL A2571 N LEU A2580 SHEET 3 AA 3 TYR A2601 VAL A2603 -1 O THR A2602 N ILE A2572 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1