HEADER HYDROLASE 14-MAY-07 2V0F TITLE BRK DOMAIN FROM HUMAN CHD7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRK DOMAIN, RESIDUES 1869-1953; COMPND 5 SYNONYM: ATP- DEPENDENT HELICASE CHD7, CHD-7; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: MODIFIED PRSETA KEYWDS NUCLEOTIDE-BINDING, CHROMATIN REGULATOR, CHARGE SYNDROME, KEYWDS 2 PHOSPHORYLATION, DISEASE MUTATION, TRANSCRIPTION REGULATION, CHD7, KEYWDS 3 HELICASE, HYDROLASE, BRK DOMAIN, ATP-BINDING, DNA-BINDING, KEYWDS 4 TRANSCRIPTION, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.D.ALLEN,T.L.RELIGA,S.M.V.FREUND,M.BYCROFT REVDAT 7 15-MAY-24 2V0F 1 REMARK REVDAT 6 24-JAN-18 2V0F 1 SOURCE REVDAT 5 19-APR-17 2V0F 1 REMARK REVDAT 4 24-FEB-09 2V0F 1 VERSN REVDAT 3 21-AUG-07 2V0F 1 JRNL REVDAT 2 10-JUL-07 2V0F 1 JRNL REVDAT 1 22-MAY-07 2V0F 0 JRNL AUTH M.D.ALLEN,T.L.RELIGA,S.M.V.FREUND,M.BYCROFT JRNL TITL SOLUTION STRUCTURE OF THE BRK DOMAINS FROM CHD7 JRNL REF J.MOL.BIOL. V. 371 1135 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17603073 JRNL DOI 10.1016/J.JMB.2007.06.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 2V0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1290032556. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 298.0 ATM REMARK 210 SAMPLE CONTENTS : 0% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN; NMRVIEW; AZARA; ANSIG; REMARK 210 CNS CNS REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 22 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A2637 102.06 -47.50 REMARK 500 1 ILE A2638 -0.78 -58.87 REMARK 500 1 LEU A2641 32.48 -85.94 REMARK 500 1 ASN A2676 77.94 -118.36 REMARK 500 1 LEU A2704 166.18 74.63 REMARK 500 1 GLU A2712 -42.46 85.60 REMARK 500 1 ALA A2714 -68.44 -149.53 REMARK 500 2 ARG A2631 -71.29 -132.02 REMARK 500 2 LYS A2635 -60.95 -126.67 REMARK 500 2 LEU A2636 99.80 -19.18 REMARK 500 2 ASP A2637 103.76 -44.49 REMARK 500 2 ILE A2638 -1.74 -58.26 REMARK 500 2 LEU A2641 32.86 -87.84 REMARK 500 2 ARG A2653 -60.61 -98.09 REMARK 500 2 LEU A2704 167.70 -44.61 REMARK 500 3 ARG A2631 -54.00 -123.52 REMARK 500 3 LEU A2636 -159.82 -99.81 REMARK 500 3 LEU A2641 33.30 -83.37 REMARK 500 3 ARG A2653 -60.79 -92.81 REMARK 500 3 ASN A2676 76.92 -118.28 REMARK 500 3 LEU A2704 155.24 61.50 REMARK 500 3 GLU A2712 -168.10 45.75 REMARK 500 4 THR A2640 20.23 -76.50 REMARK 500 4 LEU A2704 168.08 -39.32 REMARK 500 5 ARG A2631 -34.02 -146.99 REMARK 500 5 THR A2640 21.14 -75.16 REMARK 500 5 ARG A2653 -60.82 -97.92 REMARK 500 5 ASN A2676 75.82 -118.45 REMARK 500 5 LEU A2704 164.93 74.82 REMARK 500 5 GLU A2712 -47.05 -147.68 REMARK 500 5 ALA A2714 -50.18 -130.87 REMARK 500 6 LEU A2641 21.76 -79.07 REMARK 500 6 THR A2642 11.72 -65.80 REMARK 500 6 ARG A2653 -60.60 -97.98 REMARK 500 6 LEU A2704 168.77 72.16 REMARK 500 6 GLU A2712 90.54 -161.35 REMARK 500 7 ARG A2631 -57.30 -142.43 REMARK 500 7 PRO A2633 35.65 -85.93 REMARK 500 7 LEU A2636 -156.38 -100.69 REMARK 500 7 ASN A2676 76.44 -118.18 REMARK 500 7 LEU A2704 159.55 58.48 REMARK 500 7 PRO A2707 172.39 -46.04 REMARK 500 7 GLU A2712 154.09 61.45 REMARK 500 7 ALA A2714 -61.11 -97.23 REMARK 500 8 LEU A2636 -155.49 -103.40 REMARK 500 8 LEU A2641 31.43 -82.48 REMARK 500 8 ARG A2653 -60.53 -97.93 REMARK 500 8 LEU A2704 158.29 64.04 REMARK 500 8 ALA A2714 -51.41 -122.22 REMARK 500 9 ARG A2631 -63.98 -153.22 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CKC RELATED DB: PDB REMARK 900 SOLUTION STRUCTURES OF THE BRK DOMAINS OF THE HUMAN CHROMO HELICASE REMARK 900 DOMAIN 7 AND 8 , REVEALS STRUCTURAL SIMILARITY WITH GYF DOMAIN REMARK 900 SUGGESTING A ROLE IN PROTEIN INTERACTION REMARK 900 RELATED ID: 2V0E RELATED DB: PDB REMARK 900 BRK DOMAIN FROM HUMAN CHD7 REMARK 999 REMARK 999 SEQUENCE REMARK 999 EAW86834 AND NP_060250 ARE TWO OTHER REFERENCES FOR THE SEQUENCE DBREF 2V0F A 2629 2630 PDB 2V0F 2V0F 2629 2630 DBREF 2V0F A 2631 2715 UNP Q9P2D1 CHD7_HUMAN 1869 1953 SEQRES 1 A 87 GLY SER ARG ASN PRO ASN LYS LEU ASP ILE ASN THR LEU SEQRES 2 A 87 THR GLY GLU GLU ARG VAL PRO VAL VAL ASN LYS ARG ASN SEQRES 3 A 87 GLY LYS LYS MET GLY GLY ALA MET ALA PRO PRO MET LYS SEQRES 4 A 87 ASP LEU PRO ARG TRP LEU GLU GLU ASN PRO GLU PHE ALA SEQRES 5 A 87 VAL ALA PRO ASP TRP THR ASP ILE VAL LYS GLN SER GLY SEQRES 6 A 87 PHE VAL PRO GLU SER MET PHE ASP ARG LEU LEU THR GLY SEQRES 7 A 87 PRO VAL VAL ARG GLY GLU GLY ALA SER HELIX 1 1 ASN A 2632 LEU A 2636 5 5 HELIX 2 2 ASP A 2637 LEU A 2641 5 5 HELIX 3 3 ASP A 2668 ASN A 2676 1 9 HELIX 4 4 ALA A 2682 GLY A 2693 1 12 HELIX 5 5 PRO A 2696 LEU A 2703 5 8 SHEET 1 AA 3 LYS A2657 MET A2658 0 SHEET 2 AA 3 VAL A2649 ASN A2651 -1 O VAL A2649 N MET A2658 SHEET 3 AA 3 PHE A2679 VAL A2681 -1 O ALA A2680 N VAL A2650 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1