HEADER HYDROLASE INHIBITOR 15-MAY-07 2V0P TITLE THE STRUCTURE OF TAP42 ALPHA4 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE 2A PHOSPHATASE-ASSOCIATED PROTEIN 42; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-234; COMPND 5 SYNONYM: TAP42; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1 KEYWDS PHOSPHORYLATION, SIGNAL TRANSDUCTION INHIBITOR, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR S.M.ROE,J.YANG,D.BARFORD REVDAT 5 15-MAY-19 2V0P 1 REMARK REVDAT 4 08-MAY-19 2V0P 1 REMARK LINK REVDAT 3 13-JUL-11 2V0P 1 VERSN REVDAT 2 24-FEB-09 2V0P 1 VERSN REVDAT 1 17-JUL-07 2V0P 0 JRNL AUTH J.YANG,S.M.ROE,T.D.PRICKETT,D.L.BRAUTIGAN,D.BARFORD JRNL TITL THE STRUCTURE OF TAP42/ALPHA4 REVEALS A TETRATRICOPEPTIDE JRNL TITL 2 REPEAT-LIKE FOLD AND PROVIDES INSIGHTS INTO PP2A REGULATION. JRNL REF BIOCHEMISTRY V. 46 8807 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17616149 JRNL DOI 10.1021/BI7007118 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 48202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 8.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 71.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 14 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80400 REMARK 3 B22 (A**2) : -0.14700 REMARK 3 B33 (A**2) : -0.52500 REMARK 3 B12 (A**2) : -0.63200 REMARK 3 B13 (A**2) : -1.75100 REMARK 3 B23 (A**2) : 1.41900 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.611 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3611 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4857 ; 1.558 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 433 ; 5.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;38.367 ;25.281 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 729 ;15.981 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.381 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 566 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2623 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1865 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2549 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 239 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 73 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.293 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2232 ; 1.326 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3495 ; 1.936 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1519 ; 3.538 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1359 ; 4.772 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): 43.1670 44.8600 27.1220 REMARK 3 T TENSOR REMARK 3 T11: -0.2213 T22: -0.2046 REMARK 3 T33: -0.2327 T12: 0.0229 REMARK 3 T13: 0.0498 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.8613 L22: 2.1921 REMARK 3 L33: 2.3515 L12: 0.5736 REMARK 3 L13: 0.8020 L23: -0.4119 REMARK 3 S TENSOR REMARK 3 S11: -0.0676 S12: -0.0001 S13: 0.0733 REMARK 3 S21: -0.0140 S22: 0.0489 S23: 0.0165 REMARK 3 S31: -0.1147 S32: -0.0283 S33: 0.0188 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 234 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5600 63.2430 -4.8810 REMARK 3 T TENSOR REMARK 3 T11: -0.0718 T22: -0.0466 REMARK 3 T33: -0.0930 T12: -0.0192 REMARK 3 T13: -0.0546 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.5459 L22: 3.1339 REMARK 3 L33: 1.5374 L12: 0.5154 REMARK 3 L13: 0.5015 L23: -1.2149 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.0556 S13: 0.0518 REMARK 3 S21: 0.2945 S22: -0.0883 S23: -0.0974 REMARK 3 S31: -0.1659 S32: 0.1020 S33: 0.0681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1290032577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9775 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49867 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS CONCENTRATED TO 10 REMARK 280 MG/ML BEFORE CRYSTALLIZATION. CRYSTALS WERE GROWN AT 20C USING REMARK 280 THE HANGING DROP METHOD. ONE MICROLITRE OF PROTEIN WAS MIXED REMARK 280 WITH AN EQUAL VOLUME OF CRYSTALLIZATION BUFFER: 20% (W/V) PEG REMARK 280 8000, 0.1 M SODIUM CACODYLATE PH 6.5, 0.2 M MAGNESIUM ACETATE REMARK 280 AND 2MM DTT. CRYSTALS WERE OPTIMISED BY SEEDING., PH 6.50, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 56 REMARK 465 SER A 57 REMARK 465 THR A 58 REMARK 465 ASN A 59 REMARK 465 GLU A 60 REMARK 465 LYS A 188 REMARK 465 ASN A 189 REMARK 465 ASN A 190 REMARK 465 ASP A 191 REMARK 465 GLU A 192 REMARK 465 ASP A 193 REMARK 465 HIS A 194 REMARK 465 ASP A 195 REMARK 465 HIS A 196 REMARK 465 ASP A 197 REMARK 465 MSE B 1 REMARK 465 THR B 22 REMARK 465 SER B 23 REMARK 465 ASN B 134 REMARK 465 PHE B 135 REMARK 465 LYS B 136 REMARK 465 ASP B 137 REMARK 465 ARG B 138 REMARK 465 TYR B 139 REMARK 465 ASN B 140 REMARK 465 PRO B 141 REMARK 465 GLN B 142 REMARK 465 LEU B 143 REMARK 465 SER B 144 REMARK 465 GLU B 145 REMARK 465 LEU B 146 REMARK 465 TYR B 147 REMARK 465 ALA B 148 REMARK 465 GLN B 149 REMARK 465 PRO B 150 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 LYS B 234 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2057 O HOH A 2060 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 77 CE1 TYR A 77 CZ -0.095 REMARK 500 CYS A 182 CB CYS A 182 SG 0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 2 N - CA - C ANGL. DEV. = 19.0 DEGREES REMARK 500 CYS A 182 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 MSE B 206 CG - SE - CE ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 5.74 104.64 REMARK 500 ASP A 125 130.43 -34.51 REMARK 500 ARG B 25 113.07 72.94 REMARK 500 ASN B 190 47.74 -155.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MSE A 1 ALA A 2 131.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1236 DBREF 2V0P A 1 234 UNP Q04372 TAP42_YEAST 1 234 DBREF 2V0P B 1 234 UNP Q04372 TAP42_YEAST 1 234 SEQRES 1 A 234 MSE ALA SER VAL THR GLU GLN PHE ASN ASP ILE ILE SER SEQRES 2 A 234 LEU TYR SER THR LYS LEU GLU HIS THR SER LEU ARG GLN SEQRES 3 A 234 ASP SER PRO GLU TYR GLN GLY LEU LEU LEU SER THR ILE SEQRES 4 A 234 LYS LYS LEU LEU ASN LEU LYS THR ALA ILE PHE ASP ARG SEQRES 5 A 234 LEU ALA LEU PHE SER THR ASN GLU THR ILE ASP ASP VAL SEQRES 6 A 234 SER THR ALA SER ILE LYS PHE LEU ALA VAL ASP TYR TYR SEQRES 7 A 234 LEU GLY LEU LEU ILE SER ARG ARG GLN SER ASN ASP SER SEQRES 8 A 234 ASP VAL ALA GLN ARG GLN SER MSE LYS LEU ILE TYR LEU SEQRES 9 A 234 LYS LYS SER VAL GLU SER PHE ILE ASN PHE LEU THR LEU SEQRES 10 A 234 LEU GLN ASP TYR LYS LEU LEU ASP PRO LEU VAL GLY GLU SEQRES 11 A 234 LYS LEU GLY ASN PHE LYS ASP ARG TYR ASN PRO GLN LEU SEQRES 12 A 234 SER GLU LEU TYR ALA GLN PRO LYS ASN ASN LYS ASP LEU SEQRES 13 A 234 SER GLY ALA GLN LEU LYS ARG LYS GLU LYS ILE GLU LEU SEQRES 14 A 234 PHE GLN ARG ASN LYS GLU ILE SER THR LYS LEU HIS CYS SEQRES 15 A 234 LEU GLU LEU GLU LEU LYS ASN ASN ASP GLU ASP HIS ASP SEQRES 16 A 234 HIS ASP GLU LEU LEU ARG GLU LEU TYR LEU MSE ARG LEU SEQRES 17 A 234 HIS HIS PHE SER LEU ASP THR ILE ASN ASN ILE GLU GLN SEQRES 18 A 234 ASN LEU PHE GLU CYS GLU MSE LEU SER ASN PHE LEU LYS SEQRES 1 B 234 MSE ALA SER VAL THR GLU GLN PHE ASN ASP ILE ILE SER SEQRES 2 B 234 LEU TYR SER THR LYS LEU GLU HIS THR SER LEU ARG GLN SEQRES 3 B 234 ASP SER PRO GLU TYR GLN GLY LEU LEU LEU SER THR ILE SEQRES 4 B 234 LYS LYS LEU LEU ASN LEU LYS THR ALA ILE PHE ASP ARG SEQRES 5 B 234 LEU ALA LEU PHE SER THR ASN GLU THR ILE ASP ASP VAL SEQRES 6 B 234 SER THR ALA SER ILE LYS PHE LEU ALA VAL ASP TYR TYR SEQRES 7 B 234 LEU GLY LEU LEU ILE SER ARG ARG GLN SER ASN ASP SER SEQRES 8 B 234 ASP VAL ALA GLN ARG GLN SER MSE LYS LEU ILE TYR LEU SEQRES 9 B 234 LYS LYS SER VAL GLU SER PHE ILE ASN PHE LEU THR LEU SEQRES 10 B 234 LEU GLN ASP TYR LYS LEU LEU ASP PRO LEU VAL GLY GLU SEQRES 11 B 234 LYS LEU GLY ASN PHE LYS ASP ARG TYR ASN PRO GLN LEU SEQRES 12 B 234 SER GLU LEU TYR ALA GLN PRO LYS ASN ASN LYS ASP LEU SEQRES 13 B 234 SER GLY ALA GLN LEU LYS ARG LYS GLU LYS ILE GLU LEU SEQRES 14 B 234 PHE GLN ARG ASN LYS GLU ILE SER THR LYS LEU HIS CYS SEQRES 15 B 234 LEU GLU LEU GLU LEU LYS ASN ASN ASP GLU ASP HIS ASP SEQRES 16 B 234 HIS ASP GLU LEU LEU ARG GLU LEU TYR LEU MSE ARG LEU SEQRES 17 B 234 HIS HIS PHE SER LEU ASP THR ILE ASN ASN ILE GLU GLN SEQRES 18 B 234 ASN LEU PHE GLU CYS GLU MSE LEU SER ASN PHE LEU LYS MODRES 2V0P MSE A 1 MET SELENOMETHIONINE MODRES 2V0P MSE A 99 MET SELENOMETHIONINE MODRES 2V0P MSE A 206 MET SELENOMETHIONINE MODRES 2V0P MSE A 228 MET SELENOMETHIONINE MODRES 2V0P MSE B 99 MET SELENOMETHIONINE MODRES 2V0P MSE B 206 MET SELENOMETHIONINE MODRES 2V0P MSE B 228 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 99 8 HET MSE A 206 8 HET MSE A 228 8 HET MSE B 99 8 HET MSE B 206 8 HET MSE B 228 8 HET ZN A1235 1 HET ZN A1236 1 HET ZN B1235 1 HET ZN B1236 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *253(H2 O) HELIX 1 1 SER A 3 LEU A 19 1 17 HELIX 2 2 SER A 28 ASP A 51 1 24 HELIX 3 3 THR A 61 VAL A 65 5 5 HELIX 4 4 SER A 66 LEU A 73 5 8 HELIX 5 5 ALA A 74 SER A 84 1 11 HELIX 6 6 ASP A 92 TYR A 121 1 30 HELIX 7 7 ASP A 125 ASN A 134 1 10 HELIX 8 8 GLN A 142 TYR A 147 1 6 HELIX 9 9 ASP A 155 LEU A 187 1 33 HELIX 10 10 GLU A 198 PHE A 232 1 35 HELIX 11 11 SER B 3 LEU B 19 1 17 HELIX 12 12 SER B 28 ASP B 51 1 24 HELIX 13 13 ALA B 54 ASN B 59 1 6 HELIX 14 14 THR B 61 VAL B 65 5 5 HELIX 15 15 SER B 66 LYS B 71 1 6 HELIX 16 16 ALA B 74 ARG B 85 1 12 HELIX 17 17 ASP B 92 TYR B 121 1 30 HELIX 18 18 ASP B 125 GLY B 133 1 9 HELIX 19 19 ASN B 152 LYS B 164 1 13 HELIX 20 20 LYS B 166 ASN B 189 1 24 HELIX 21 21 HIS B 196 PHE B 232 1 37 LINK C MSE A 1 N ALA A 2 1555 1555 1.34 LINK C SER A 98 N MSE A 99 1555 1555 1.32 LINK C MSE A 99 N LYS A 100 1555 1555 1.33 LINK C LEU A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N ARG A 207 1555 1555 1.32 LINK C GLU A 227 N MSE A 228 1555 1555 1.32 LINK C MSE A 228 N LEU A 229 1555 1555 1.34 LINK ZN ZN A1235 SG CYS A 182 1555 1555 1.42 LINK ZN ZN A1236 SG CYS A 226 1555 1555 2.28 LINK C SER B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N LYS B 100 1555 1555 1.35 LINK C LEU B 205 N MSE B 206 1555 1555 1.33 LINK C MSE B 206 N ARG B 207 1555 1555 1.32 LINK C GLU B 227 N MSE B 228 1555 1555 1.32 LINK C MSE B 228 N LEU B 229 1555 1555 1.33 LINK ZN ZN B1235 SG CYS B 182 1555 1555 2.59 LINK ZN ZN B1236 SG CYS B 226 1555 1555 2.13 CISPEP 1 ALA A 2 SER A 3 0 -12.20 SITE 1 AC1 1 CYS A 182 SITE 1 AC2 1 CYS A 226 SITE 1 AC3 1 CYS B 182 SITE 1 AC4 1 CYS B 226 CRYST1 44.633 48.308 71.960 81.31 87.94 69.83 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022405 -0.008230 0.000416 0.00000 SCALE2 0.000000 0.022053 -0.003297 0.00000 SCALE3 0.000000 0.000000 0.014060 0.00000 HETATM 1 N MSE A 1 43.637 28.474 43.834 1.00 46.99 N HETATM 2 CA MSE A 1 43.962 27.065 43.573 1.00 47.52 C HETATM 3 C MSE A 1 45.110 26.811 42.592 1.00 47.52 C HETATM 4 O MSE A 1 45.200 27.468 41.548 1.00 48.90 O HETATM 5 CB MSE A 1 42.700 26.336 43.101 1.00 48.09 C