HEADER TRANSCRIPTION 19-MAY-07 2V0V TITLE CRYSTAL STRUCTURE OF REV-ERB BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORPHAN NUCLEAR RECEPTOR NR1D2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, RESIDUES 386-579; COMPND 5 SYNONYM: EAR-1R, ORPHAN NUCLEAR HORMONE RECEPTOR BD73, REV-ERB BETA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ZINC, RECEPTOR, REPRESSOR, ZINC-FINGER, DNA-BINDING, CONSTITUTIVE KEYWDS 2 REPRESSION, TRANSCRIPTION REGULATION, ORPHAN RECEPTOR, A-HELICAL KEYWDS 3 SANDWICH, TRANSCRIPTION, METAL-BINDING, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.-J.WOO,D.G.JEONG,M.-Y.LIM,S.JUN KIM,S.EON RYU REVDAT 4 22-MAY-19 2V0V 1 REMARK REVDAT 3 24-OCT-18 2V0V 1 SOURCE REMARK REVDAT 2 24-FEB-09 2V0V 1 VERSN REVDAT 1 23-OCT-07 2V0V 0 JRNL AUTH E.-J.WOO,D.G.JEONG,M.-Y.LIM,S.JUN KIM,K.-J.KIM,S.-M.YOON, JRNL AUTH 2 B.-C.PARK,S.EON RYU JRNL TITL STRUCTURAL INSIGHT INTO THE CONSTITUTIVE REPRESSION FUNCTION JRNL TITL 2 OF THE NUCLEAR RECEPTOR REV-ERBBETA JRNL REF J.MOL.BIOL. V. 373 735 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17870090 JRNL DOI 10.1016/J.JMB.2007.08.037 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.138 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.177 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1357 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 27157 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 24848 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 5818.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 23276 REMARK 3 NUMBER OF RESTRAINTS : 23794 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 ANGLE DISTANCES (A) : 0.021 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.023 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.023 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.031 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.023 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.112 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2V0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1290032611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29048 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 18%, ISOPROPANOL 10%, 100 MM REMARK 280 HEPES PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.22800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 51.22800 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.98200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.22800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.99100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.22800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.97300 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.22800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.22800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.98200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 51.22800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 107.97300 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 51.22800 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 35.99100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 386 REMARK 465 SER A 387 REMARK 465 LYS A 388 REMARK 465 SER A 389 REMARK 465 PRO A 390 REMARK 465 TYR A 391 REMARK 465 VAL A 392 REMARK 465 ASP A 393 REMARK 465 PRO A 394 REMARK 465 HIS A 395 REMARK 465 VAL A 577 REMARK 465 HIS A 578 REMARK 465 PRO A 579 REMARK 465 MET B 386 REMARK 465 SER B 387 REMARK 465 LYS B 388 REMARK 465 SER B 389 REMARK 465 PRO B 390 REMARK 465 TYR B 391 REMARK 465 VAL B 392 REMARK 465 ASP B 393 REMARK 465 PRO B 394 REMARK 465 HIS B 395 REMARK 465 VAL B 577 REMARK 465 HIS B 578 REMARK 465 PRO B 579 REMARK 465 MET C 386 REMARK 465 SER C 387 REMARK 465 LYS C 388 REMARK 465 SER C 389 REMARK 465 PRO C 390 REMARK 465 TYR C 391 REMARK 465 VAL C 392 REMARK 465 ASP C 393 REMARK 465 PRO C 394 REMARK 465 HIS C 395 REMARK 465 LYS C 396 REMARK 465 SER C 397 REMARK 465 VAL C 577 REMARK 465 HIS C 578 REMARK 465 PRO C 579 REMARK 465 MET D 386 REMARK 465 SER D 387 REMARK 465 LYS D 388 REMARK 465 SER D 389 REMARK 465 PRO D 390 REMARK 465 TYR D 391 REMARK 465 VAL D 392 REMARK 465 ASP D 393 REMARK 465 PRO D 394 REMARK 465 HIS D 395 REMARK 465 LYS D 396 REMARK 465 SER D 397 REMARK 465 VAL D 577 REMARK 465 HIS D 578 REMARK 465 PRO D 579 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 ILE A 401 CE MET A 477 1.30 REMARK 500 O ASP B 473 OG SER B 476 1.66 REMARK 500 O LEU A 474 O SER A 476 1.67 REMARK 500 O ASP B 473 CG MET B 477 1.80 REMARK 500 O SER A 470 OD2 ASP A 473 2.09 REMARK 500 O LEU B 474 N MET B 477 2.09 REMARK 500 CB SER A 470 OD1 ASP A 473 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 408 CB - CA - C ANGL. DEV. = 20.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 406 -70.15 -29.51 REMARK 500 SER A 408 175.32 138.30 REMARK 500 PHE A 409 -7.73 35.88 REMARK 500 TYR A 469 -113.75 -128.60 REMARK 500 SER A 470 129.56 161.93 REMARK 500 SER A 476 -148.49 -80.36 REMARK 500 MET A 477 -17.45 78.15 REMARK 500 ASN A 484 -72.74 -62.32 REMARK 500 PHE A 487 -70.84 -55.94 REMARK 500 LEU A 498 175.22 -59.01 REMARK 500 ASP A 515 122.34 -38.36 REMARK 500 GLU A 520 -75.12 -70.12 REMARK 500 ARG A 534 -70.09 -77.53 REMARK 500 HIS A 544 72.03 -119.78 REMARK 500 ASN A 546 39.47 -98.85 REMARK 500 GLU A 570 -36.76 -39.87 REMARK 500 LEU A 572 -76.35 -126.56 REMARK 500 ALA A 574 75.01 -66.65 REMARK 500 SER B 397 -158.95 -80.02 REMARK 500 HIS B 399 -3.67 74.99 REMARK 500 SER B 408 -66.11 -99.25 REMARK 500 SER B 452 -9.48 -57.04 REMARK 500 ARG B 459 32.99 70.90 REMARK 500 SER B 466 3.94 53.13 REMARK 500 LYS B 467 77.81 -64.92 REMARK 500 TYR B 469 -88.98 -143.10 REMARK 500 SER B 470 133.25 137.34 REMARK 500 ASN B 546 51.75 -109.38 REMARK 500 GLU B 547 24.20 -165.72 REMARK 500 GLU B 571 38.59 -74.72 REMARK 500 LEU B 572 -67.95 -125.38 REMARK 500 PHE B 575 -85.55 -151.57 REMARK 500 HIS C 399 -22.10 82.02 REMARK 500 GLU C 400 -11.56 -46.88 REMARK 500 MET C 407 49.07 -102.68 REMARK 500 SER C 408 -60.63 -130.34 REMARK 500 ARG C 427 -8.68 -58.76 REMARK 500 HIS C 432 -74.92 -51.47 REMARK 500 GLN C 434 -75.26 -54.39 REMARK 500 VAL C 435 -38.76 -39.29 REMARK 500 ASP C 455 98.55 -162.72 REMARK 500 LYS C 457 -70.53 -72.07 REMARK 500 LEU C 464 91.95 -22.41 REMARK 500 SER C 466 49.44 34.16 REMARK 500 TYR C 469 -120.62 -117.82 REMARK 500 SER C 470 128.25 165.58 REMARK 500 ALA C 479 78.02 -64.33 REMARK 500 GLU C 547 51.39 -91.43 REMARK 500 SER C 549 -8.82 -54.37 REMARK 500 ASN C 566 39.54 -78.83 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 407 SER A 408 -142.11 REMARK 500 THR A 410 PRO A 411 149.36 REMARK 500 HIS A 475 SER A 476 114.86 REMARK 500 SER B 476 MET B 477 -137.37 REMARK 500 GLU B 547 ALA B 548 -131.83 REMARK 500 MET C 567 HIS C 568 -145.20 REMARK 500 LEU D 464 GLY D 465 -106.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2002 DISTANCE = 6.55 ANGSTROMS DBREF 2V0V A 386 579 UNP Q14995 NR1D2_HUMAN 386 579 DBREF 2V0V B 386 579 UNP Q14995 NR1D2_HUMAN 386 579 DBREF 2V0V C 386 579 UNP Q14995 NR1D2_HUMAN 386 579 DBREF 2V0V D 386 579 UNP Q14995 NR1D2_HUMAN 386 579 SEQRES 1 A 194 MET SER LYS SER PRO TYR VAL ASP PRO HIS LYS SER GLY SEQRES 2 A 194 HIS GLU ILE TRP GLU GLU PHE SER MET SER PHE THR PRO SEQRES 3 A 194 ALA VAL LYS GLU VAL VAL GLU PHE ALA LYS ARG ILE PRO SEQRES 4 A 194 GLY PHE ARG ASP LEU SER GLN HIS ASP GLN VAL ASN LEU SEQRES 5 A 194 LEU LYS ALA GLY THR PHE GLU VAL LEU MET VAL ARG PHE SEQRES 6 A 194 ALA SER LEU PHE ASP ALA LYS GLU ARG THR VAL THR PHE SEQRES 7 A 194 LEU GLY SER LYS LYS TYR SER VAL ASP ASP LEU HIS SER SEQRES 8 A 194 MET GLY ALA GLY ASP LEU LEU ASN SER MET PHE GLU PHE SEQRES 9 A 194 SER GLU LYS LEU ASN ALA LEU GLN LEU SER ASP GLU GLU SEQRES 10 A 194 MET SER LEU PHE THR ALA VAL VAL LEU VAL SER ALA ASP SEQRES 11 A 194 ARG SER GLY ILE GLU ASN VAL ASN SER VAL GLU ALA LEU SEQRES 12 A 194 GLN GLU THR LEU ILE ARG ALA LEU ARG THR LEU ILE MET SEQRES 13 A 194 LYS ASN HIS PRO ASN GLU ALA SER ILE PHE THR LYS LEU SEQRES 14 A 194 LEU LEU LYS LEU PRO ASP LEU ARG SER LEU ASN ASN MET SEQRES 15 A 194 HIS SER GLU GLU LEU LEU ALA PHE LYS VAL HIS PRO SEQRES 1 B 194 MET SER LYS SER PRO TYR VAL ASP PRO HIS LYS SER GLY SEQRES 2 B 194 HIS GLU ILE TRP GLU GLU PHE SER MET SER PHE THR PRO SEQRES 3 B 194 ALA VAL LYS GLU VAL VAL GLU PHE ALA LYS ARG ILE PRO SEQRES 4 B 194 GLY PHE ARG ASP LEU SER GLN HIS ASP GLN VAL ASN LEU SEQRES 5 B 194 LEU LYS ALA GLY THR PHE GLU VAL LEU MET VAL ARG PHE SEQRES 6 B 194 ALA SER LEU PHE ASP ALA LYS GLU ARG THR VAL THR PHE SEQRES 7 B 194 LEU GLY SER LYS LYS TYR SER VAL ASP ASP LEU HIS SER SEQRES 8 B 194 MET GLY ALA GLY ASP LEU LEU ASN SER MET PHE GLU PHE SEQRES 9 B 194 SER GLU LYS LEU ASN ALA LEU GLN LEU SER ASP GLU GLU SEQRES 10 B 194 MET SER LEU PHE THR ALA VAL VAL LEU VAL SER ALA ASP SEQRES 11 B 194 ARG SER GLY ILE GLU ASN VAL ASN SER VAL GLU ALA LEU SEQRES 12 B 194 GLN GLU THR LEU ILE ARG ALA LEU ARG THR LEU ILE MET SEQRES 13 B 194 LYS ASN HIS PRO ASN GLU ALA SER ILE PHE THR LYS LEU SEQRES 14 B 194 LEU LEU LYS LEU PRO ASP LEU ARG SER LEU ASN ASN MET SEQRES 15 B 194 HIS SER GLU GLU LEU LEU ALA PHE LYS VAL HIS PRO SEQRES 1 C 194 MET SER LYS SER PRO TYR VAL ASP PRO HIS LYS SER GLY SEQRES 2 C 194 HIS GLU ILE TRP GLU GLU PHE SER MET SER PHE THR PRO SEQRES 3 C 194 ALA VAL LYS GLU VAL VAL GLU PHE ALA LYS ARG ILE PRO SEQRES 4 C 194 GLY PHE ARG ASP LEU SER GLN HIS ASP GLN VAL ASN LEU SEQRES 5 C 194 LEU LYS ALA GLY THR PHE GLU VAL LEU MET VAL ARG PHE SEQRES 6 C 194 ALA SER LEU PHE ASP ALA LYS GLU ARG THR VAL THR PHE SEQRES 7 C 194 LEU GLY SER LYS LYS TYR SER VAL ASP ASP LEU HIS SER SEQRES 8 C 194 MET GLY ALA GLY ASP LEU LEU ASN SER MET PHE GLU PHE SEQRES 9 C 194 SER GLU LYS LEU ASN ALA LEU GLN LEU SER ASP GLU GLU SEQRES 10 C 194 MET SER LEU PHE THR ALA VAL VAL LEU VAL SER ALA ASP SEQRES 11 C 194 ARG SER GLY ILE GLU ASN VAL ASN SER VAL GLU ALA LEU SEQRES 12 C 194 GLN GLU THR LEU ILE ARG ALA LEU ARG THR LEU ILE MET SEQRES 13 C 194 LYS ASN HIS PRO ASN GLU ALA SER ILE PHE THR LYS LEU SEQRES 14 C 194 LEU LEU LYS LEU PRO ASP LEU ARG SER LEU ASN ASN MET SEQRES 15 C 194 HIS SER GLU GLU LEU LEU ALA PHE LYS VAL HIS PRO SEQRES 1 D 194 MET SER LYS SER PRO TYR VAL ASP PRO HIS LYS SER GLY SEQRES 2 D 194 HIS GLU ILE TRP GLU GLU PHE SER MET SER PHE THR PRO SEQRES 3 D 194 ALA VAL LYS GLU VAL VAL GLU PHE ALA LYS ARG ILE PRO SEQRES 4 D 194 GLY PHE ARG ASP LEU SER GLN HIS ASP GLN VAL ASN LEU SEQRES 5 D 194 LEU LYS ALA GLY THR PHE GLU VAL LEU MET VAL ARG PHE SEQRES 6 D 194 ALA SER LEU PHE ASP ALA LYS GLU ARG THR VAL THR PHE SEQRES 7 D 194 LEU GLY SER LYS LYS TYR SER VAL ASP ASP LEU HIS SER SEQRES 8 D 194 MET GLY ALA GLY ASP LEU LEU ASN SER MET PHE GLU PHE SEQRES 9 D 194 SER GLU LYS LEU ASN ALA LEU GLN LEU SER ASP GLU GLU SEQRES 10 D 194 MET SER LEU PHE THR ALA VAL VAL LEU VAL SER ALA ASP SEQRES 11 D 194 ARG SER GLY ILE GLU ASN VAL ASN SER VAL GLU ALA LEU SEQRES 12 D 194 GLN GLU THR LEU ILE ARG ALA LEU ARG THR LEU ILE MET SEQRES 13 D 194 LYS ASN HIS PRO ASN GLU ALA SER ILE PHE THR LYS LEU SEQRES 14 D 194 LEU LEU LYS LEU PRO ASP LEU ARG SER LEU ASN ASN MET SEQRES 15 D 194 HIS SER GLU GLU LEU LEU ALA PHE LYS VAL HIS PRO FORMUL 5 HOH *96(H2 O) HELIX 1 1 ILE A 401 MET A 407 1 7 HELIX 2 2 ALA A 412 ILE A 423 1 12 HELIX 3 3 SER A 430 ALA A 451 1 22 HELIX 4 4 ASP A 481 LEU A 496 1 16 HELIX 5 5 SER A 499 VAL A 512 1 14 HELIX 6 6 ASP A 515 ILE A 519 5 5 HELIX 7 7 ASN A 521 HIS A 544 1 24 HELIX 8 8 PRO A 545 ILE A 550 5 6 HELIX 9 9 PHE A 551 LEU A 556 1 6 HELIX 10 10 LEU A 556 SER A 569 1 14 HELIX 11 11 GLU A 570 LEU A 572 5 3 HELIX 12 12 ILE B 401 MET B 407 1 7 HELIX 13 13 ALA B 412 ILE B 423 1 12 HELIX 14 14 SER B 430 PHE B 450 1 21 HELIX 15 15 ASP B 473 GLY B 478 1 6 HELIX 16 16 GLY B 480 LEU B 496 1 17 HELIX 17 17 SER B 499 VAL B 512 1 14 HELIX 18 18 ASN B 521 HIS B 544 1 24 HELIX 19 19 ALA B 548 LEU B 556 1 9 HELIX 20 20 LEU B 556 SER B 569 1 14 HELIX 21 21 SER B 569 ALA B 574 1 6 HELIX 22 22 ILE C 401 MET C 407 1 7 HELIX 23 23 ALA C 412 ARG C 422 1 11 HELIX 24 24 GLY C 425 LEU C 429 5 5 HELIX 25 25 SER C 430 PHE C 450 1 21 HELIX 26 26 ALA C 451 PHE C 454 5 4 HELIX 27 27 ASP C 481 ASN C 494 1 14 HELIX 28 28 SER C 499 SER C 513 1 15 HELIX 29 29 ASP C 515 ILE C 519 5 5 HELIX 30 30 ASN C 521 HIS C 544 1 24 HELIX 31 31 ALA C 548 LEU C 556 1 9 HELIX 32 32 LEU C 556 SER C 569 1 14 HELIX 33 33 TRP D 402 THR D 410 1 9 HELIX 34 34 LYS D 414 ILE D 423 1 10 HELIX 35 35 SER D 430 PHE D 450 1 21 HELIX 36 36 ALA D 451 LEU D 453 5 3 HELIX 37 37 ASP D 473 GLY D 478 1 6 HELIX 38 38 GLY D 480 LEU D 496 1 17 HELIX 39 39 SER D 499 VAL D 512 1 14 HELIX 40 40 ASP D 515 ILE D 519 5 5 HELIX 41 41 ASN D 521 HIS D 544 1 24 HELIX 42 42 ALA D 548 SER D 569 1 22 HELIX 43 43 SER D 569 ALA D 574 1 6 SHEET 1 AA 2 PHE A 454 ASP A 455 0 SHEET 2 AA 2 THR A 460 VAL A 461 -1 O THR A 460 N ASP A 455 SHEET 1 BA 2 PHE B 454 ASP B 455 0 SHEET 2 BA 2 THR B 460 VAL B 461 -1 O THR B 460 N ASP B 455 SHEET 1 CA 2 THR C 462 PHE C 463 0 SHEET 2 CA 2 LYS C 467 LYS C 468 -1 O LYS C 467 N PHE C 463 SHEET 1 DA 2 THR D 462 PHE D 463 0 SHEET 2 DA 2 LYS D 467 LYS D 468 -1 O LYS D 467 N PHE D 463 CRYST1 102.456 102.456 143.964 90.00 90.00 90.00 I 41 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006946 0.00000 MTRIX1 1 -0.998680 -0.048580 0.016650 -1.30339 1 MTRIX2 1 -0.048470 0.998800 0.006990 0.91793 1 MTRIX3 1 -0.016970 0.006170 -0.999840 18.78336 1 MTRIX1 2 -0.084490 0.995690 0.038370 -3.50674 1 MTRIX2 2 0.996410 0.084250 0.007760 51.04293 1 MTRIX3 2 0.004490 0.038890 -0.999230 -17.22289 1 MTRIX1 3 0.061590 0.995700 0.069200 -47.98832 1 MTRIX2 3 -0.998010 0.060480 0.018090 -6.59137 1 MTRIX3 3 0.013830 -0.070170 0.997440 38.27809 1