data_2V1A # _entry.id 2V1A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2V1A PDBE EBI-32634 WWPDB D_1290032634 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2V0U unspecified . PDB 2V0W unspecified . PDB 2V1B unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V1A _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-05-22 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Halavaty, A.S.' 1 'Moffat, K.' 2 # _citation.id primary _citation.title ;N- and C-Terminal Flanking Regions Modulate Light-Induced Signal Transduction in the Lov2 Domain of the Blue Light Sensor Phototropin 1 from Avena Sativa. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 46 _citation.page_first 14001 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18001137 _citation.pdbx_database_id_DOI 10.1021/BI701543E # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Halavaty, A.S.' 1 ? primary 'Moffat, K.' 2 ? # _cell.entry_id 2V1A _cell.length_a 35.706 _cell.length_b 57.155 _cell.length_c 67.395 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V1A _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man NPH1-1 16666.840 1 ? ? 'LIGHT, OXYGEN, VOLTAGE DOMAIN, RESIDUES 404-546' ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 143 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name LOV2 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;FLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLIN YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKEL ; _entity_poly.pdbx_seq_one_letter_code_can ;FLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLIN YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKEL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 LEU n 1 3 ALA n 1 4 THR n 1 5 THR n 1 6 LEU n 1 7 GLU n 1 8 ARG n 1 9 ILE n 1 10 GLU n 1 11 LYS n 1 12 ASN n 1 13 PHE n 1 14 VAL n 1 15 ILE n 1 16 THR n 1 17 ASP n 1 18 PRO n 1 19 ARG n 1 20 LEU n 1 21 PRO n 1 22 ASP n 1 23 ASN n 1 24 PRO n 1 25 ILE n 1 26 ILE n 1 27 PHE n 1 28 ALA n 1 29 SER n 1 30 ASP n 1 31 SER n 1 32 PHE n 1 33 LEU n 1 34 GLN n 1 35 LEU n 1 36 THR n 1 37 GLU n 1 38 TYR n 1 39 SER n 1 40 ARG n 1 41 GLU n 1 42 GLU n 1 43 ILE n 1 44 LEU n 1 45 GLY n 1 46 ARG n 1 47 ASN n 1 48 CYS n 1 49 ARG n 1 50 PHE n 1 51 LEU n 1 52 GLN n 1 53 GLY n 1 54 PRO n 1 55 GLU n 1 56 THR n 1 57 ASP n 1 58 ARG n 1 59 ALA n 1 60 THR n 1 61 VAL n 1 62 ARG n 1 63 LYS n 1 64 ILE n 1 65 ARG n 1 66 ASP n 1 67 ALA n 1 68 ILE n 1 69 ASP n 1 70 ASN n 1 71 GLN n 1 72 THR n 1 73 GLU n 1 74 VAL n 1 75 THR n 1 76 VAL n 1 77 GLN n 1 78 LEU n 1 79 ILE n 1 80 ASN n 1 81 TYR n 1 82 THR n 1 83 LYS n 1 84 SER n 1 85 GLY n 1 86 LYS n 1 87 LYS n 1 88 PHE n 1 89 TRP n 1 90 ASN n 1 91 LEU n 1 92 PHE n 1 93 HIS n 1 94 LEU n 1 95 GLN n 1 96 PRO n 1 97 MET n 1 98 ARG n 1 99 ASP n 1 100 GLN n 1 101 LYS n 1 102 GLY n 1 103 ASP n 1 104 VAL n 1 105 GLN n 1 106 TYR n 1 107 PHE n 1 108 ILE n 1 109 GLY n 1 110 VAL n 1 111 GLN n 1 112 LEU n 1 113 ASP n 1 114 GLY n 1 115 THR n 1 116 GLU n 1 117 HIS n 1 118 VAL n 1 119 ARG n 1 120 ASP n 1 121 ALA n 1 122 ALA n 1 123 GLU n 1 124 ARG n 1 125 GLU n 1 126 GLY n 1 127 VAL n 1 128 MET n 1 129 LEU n 1 130 ILE n 1 131 LYS n 1 132 LYS n 1 133 THR n 1 134 ALA n 1 135 GLU n 1 136 ASN n 1 137 ILE n 1 138 ASP n 1 139 GLU n 1 140 ALA n 1 141 ALA n 1 142 LYS n 1 143 GLU n 1 144 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name OAT _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'AVENA SATIVA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4498 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PHIS-GB1-PARALLEL1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V1A 1 ? ? 2V1A ? 2 UNP O49003_AVESA 1 ? ? O49003 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V1A A 1 ? 1 ? 2V1A 403 ? 403 ? 403 403 2 2 2V1A A 2 ? 144 ? O49003 404 ? 546 ? 404 546 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V1A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.8 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'BENT CONICAL SI-MIRROR (RH COATED)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'BENT GE(111) MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9002 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C _diffrn_source.pdbx_wavelength 0.9002 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V1A _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.65 _reflns.number_obs 57554 _reflns.number_all ? _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 30.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.4 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.71 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.21 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.40 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V1A _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 15778 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.83 _refine.ls_d_res_high 1.65 _refine.ls_percent_reflns_obs 97.0 _refine.ls_R_factor_obs 0.158 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.156 _refine.ls_R_factor_R_free 0.195 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 843 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.B_iso_mean 17.00 _refine.aniso_B[1][1] -0.08000 _refine.aniso_B[2][2] 0.01000 _refine.aniso_B[3][3] 0.07000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2V0U' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.098 _refine.pdbx_overall_ESU_R_Free 0.098 _refine.overall_SU_ML 0.052 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.930 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1173 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1359 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 15.83 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1272 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 876 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.250 2.000 ? 1731 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.867 3.000 ? 2140 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.564 5.000 ? 157 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.999 24.545 ? 66 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.657 15.000 ? 231 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.249 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.079 0.200 ? 194 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1395 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 250 'X-RAY DIFFRACTION' ? r_nbd_refined 0.210 0.200 ? 224 'X-RAY DIFFRACTION' ? r_nbd_other 0.193 0.200 ? 940 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.179 0.200 ? 639 'X-RAY DIFFRACTION' ? r_nbtor_other 0.082 0.200 ? 670 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.142 0.200 ? 76 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.263 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.299 0.200 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.129 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.111 1.500 ? 993 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.131 2.000 ? 1210 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.460 3.000 ? 634 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.541 4.500 ? 514 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.65 _refine_ls_shell.d_res_low 1.69 _refine_ls_shell.number_reflns_R_work 1166 _refine_ls_shell.R_factor_R_work 0.1570 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.1960 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 2V1A _struct.title ;N- and C-terminal helices of oat LOV2 (404-546) are involved in light-induced signal transduction (room temperature (293K) dark structure of LOV2 (404-546)) ; _struct.pdbx_descriptor NPH1-1 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V1A _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;LOV2, KINASE, TRANSFERASE, ATP-BINDING, AVENA SATIVA, SERINE/THREONINE-PROTEIN KINASE, LIGHT-INDUCED SIGNAL TRANSDUCTION, PHOTOTROPIN1, NUCLEOTIDE-BINDING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? ILE A 9 ? THR A 407 ILE A 411 5 ? 5 HELX_P HELX_P2 2 SER A 29 ? GLU A 37 ? SER A 431 GLU A 439 1 ? 9 HELX_P HELX_P3 3 SER A 39 ? LEU A 44 ? SER A 441 LEU A 446 1 ? 6 HELX_P HELX_P4 4 ASN A 47 ? GLN A 52 ? ASN A 449 GLN A 454 5 ? 6 HELX_P HELX_P5 5 ASP A 57 ? ASN A 70 ? ASP A 459 ASN A 472 1 ? 14 HELX_P HELX_P6 6 ARG A 119 ? LYS A 142 ? ARG A 521 LYS A 544 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 25 ? ALA A 28 ? ILE A 427 ALA A 430 AA 2 PHE A 13 ? THR A 16 ? PHE A 415 THR A 418 AA 3 VAL A 104 ? GLY A 114 ? VAL A 506 GLY A 516 AA 4 LYS A 87 ? ARG A 98 ? LYS A 489 ARG A 500 AA 5 VAL A 74 ? TYR A 81 ? VAL A 476 TYR A 483 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 26 ? N ILE A 428 O ILE A 15 ? O ILE A 417 AA 2 3 N THR A 16 ? N THR A 418 O PHE A 107 ? O PHE A 509 AA 3 4 N GLY A 114 ? N GLY A 516 O TRP A 89 ? O TRP A 491 AA 4 5 N LEU A 94 ? N LEU A 496 O VAL A 74 ? O VAL A 476 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 20 'BINDING SITE FOR RESIDUE FMN A1547' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A1548' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A1549' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 VAL A 14 ? VAL A 416 . ? 1_555 ? 2 AC1 20 THR A 16 ? THR A 418 . ? 1_555 ? 3 AC1 20 ASN A 23 ? ASN A 425 . ? 1_555 ? 4 AC1 20 ASN A 47 ? ASN A 449 . ? 1_555 ? 5 AC1 20 CYS A 48 ? CYS A 450 . ? 1_555 ? 6 AC1 20 ARG A 49 ? ARG A 451 . ? 1_555 ? 7 AC1 20 LEU A 51 ? LEU A 453 . ? 1_555 ? 8 AC1 20 GLN A 52 ? GLN A 454 . ? 1_555 ? 9 AC1 20 VAL A 61 ? VAL A 463 . ? 1_555 ? 10 AC1 20 ILE A 68 ? ILE A 470 . ? 1_555 ? 11 AC1 20 LEU A 78 ? LEU A 480 . ? 1_555 ? 12 AC1 20 ASN A 80 ? ASN A 482 . ? 1_555 ? 13 AC1 20 ASN A 90 ? ASN A 492 . ? 1_555 ? 14 AC1 20 PHE A 92 ? PHE A 494 . ? 1_555 ? 15 AC1 20 GLY A 109 ? GLY A 511 . ? 1_555 ? 16 AC1 20 GLN A 111 ? GLN A 513 . ? 1_555 ? 17 AC1 20 GLU A 143 ? GLU A 545 . ? 1_555 ? 18 AC1 20 HOH E . ? HOH A 2066 . ? 1_555 ? 19 AC1 20 HOH E . ? HOH A 2133 . ? 1_555 ? 20 AC1 20 HOH E . ? HOH A 2134 . ? 1_555 ? 21 AC2 5 PHE A 1 ? PHE A 403 . ? 1_555 ? 22 AC2 5 LEU A 2 ? LEU A 404 . ? 1_555 ? 23 AC2 5 GLU A 123 ? GLU A 525 . ? 1_555 ? 24 AC2 5 ARG A 124 ? ARG A 526 . ? 1_555 ? 25 AC2 5 HOH E . ? HOH A 2114 . ? 1_555 ? 26 AC3 6 THR A 75 ? THR A 477 . ? 1_555 ? 27 AC3 6 GLN A 77 ? GLN A 479 . ? 1_555 ? 28 AC3 6 LYS A 101 ? LYS A 503 . ? 1_555 ? 29 AC3 6 HIS A 117 ? HIS A 519 . ? 1_555 ? 30 AC3 6 GLU A 123 ? GLU A 525 . ? 1_555 ? 31 AC3 6 HOH E . ? HOH A 2142 . ? 1_555 ? # _database_PDB_matrix.entry_id 2V1A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V1A _atom_sites.fract_transf_matrix[1][1] 0.028006 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017496 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014838 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 403 403 PHE PHE A . n A 1 2 LEU 2 404 404 LEU LEU A . n A 1 3 ALA 3 405 405 ALA ALA A . n A 1 4 THR 4 406 406 THR THR A . n A 1 5 THR 5 407 407 THR THR A . n A 1 6 LEU 6 408 408 LEU LEU A . n A 1 7 GLU 7 409 409 GLU GLU A . n A 1 8 ARG 8 410 410 ARG ARG A . n A 1 9 ILE 9 411 411 ILE ILE A . n A 1 10 GLU 10 412 412 GLU GLU A . n A 1 11 LYS 11 413 413 LYS LYS A . n A 1 12 ASN 12 414 414 ASN ASN A . n A 1 13 PHE 13 415 415 PHE PHE A . n A 1 14 VAL 14 416 416 VAL VAL A . n A 1 15 ILE 15 417 417 ILE ILE A . n A 1 16 THR 16 418 418 THR THR A . n A 1 17 ASP 17 419 419 ASP ASP A . n A 1 18 PRO 18 420 420 PRO PRO A . n A 1 19 ARG 19 421 421 ARG ARG A . n A 1 20 LEU 20 422 422 LEU LEU A . n A 1 21 PRO 21 423 423 PRO PRO A . n A 1 22 ASP 22 424 424 ASP ASP A . n A 1 23 ASN 23 425 425 ASN ASN A . n A 1 24 PRO 24 426 426 PRO PRO A . n A 1 25 ILE 25 427 427 ILE ILE A . n A 1 26 ILE 26 428 428 ILE ILE A . n A 1 27 PHE 27 429 429 PHE PHE A . n A 1 28 ALA 28 430 430 ALA ALA A . n A 1 29 SER 29 431 431 SER SER A . n A 1 30 ASP 30 432 432 ASP ASP A . n A 1 31 SER 31 433 433 SER SER A . n A 1 32 PHE 32 434 434 PHE PHE A . n A 1 33 LEU 33 435 435 LEU LEU A . n A 1 34 GLN 34 436 436 GLN GLN A . n A 1 35 LEU 35 437 437 LEU LEU A . n A 1 36 THR 36 438 438 THR THR A . n A 1 37 GLU 37 439 439 GLU GLU A . n A 1 38 TYR 38 440 440 TYR TYR A . n A 1 39 SER 39 441 441 SER SER A . n A 1 40 ARG 40 442 442 ARG ARG A . n A 1 41 GLU 41 443 443 GLU GLU A . n A 1 42 GLU 42 444 444 GLU GLU A . n A 1 43 ILE 43 445 445 ILE ILE A . n A 1 44 LEU 44 446 446 LEU LEU A . n A 1 45 GLY 45 447 447 GLY GLY A . n A 1 46 ARG 46 448 448 ARG ARG A . n A 1 47 ASN 47 449 449 ASN ASN A . n A 1 48 CYS 48 450 450 CYS CYS A . n A 1 49 ARG 49 451 451 ARG ARG A . n A 1 50 PHE 50 452 452 PHE PHE A . n A 1 51 LEU 51 453 453 LEU LEU A . n A 1 52 GLN 52 454 454 GLN GLN A . n A 1 53 GLY 53 455 455 GLY GLY A . n A 1 54 PRO 54 456 456 PRO PRO A . n A 1 55 GLU 55 457 457 GLU GLU A . n A 1 56 THR 56 458 458 THR THR A . n A 1 57 ASP 57 459 459 ASP ASP A . n A 1 58 ARG 58 460 460 ARG ARG A . n A 1 59 ALA 59 461 461 ALA ALA A . n A 1 60 THR 60 462 462 THR THR A . n A 1 61 VAL 61 463 463 VAL VAL A . n A 1 62 ARG 62 464 464 ARG ARG A . n A 1 63 LYS 63 465 465 LYS LYS A . n A 1 64 ILE 64 466 466 ILE ILE A . n A 1 65 ARG 65 467 467 ARG ARG A . n A 1 66 ASP 66 468 468 ASP ASP A . n A 1 67 ALA 67 469 469 ALA ALA A . n A 1 68 ILE 68 470 470 ILE ILE A . n A 1 69 ASP 69 471 471 ASP ASP A . n A 1 70 ASN 70 472 472 ASN ASN A . n A 1 71 GLN 71 473 473 GLN GLN A . n A 1 72 THR 72 474 474 THR THR A . n A 1 73 GLU 73 475 475 GLU GLU A . n A 1 74 VAL 74 476 476 VAL VAL A . n A 1 75 THR 75 477 477 THR THR A . n A 1 76 VAL 76 478 478 VAL VAL A . n A 1 77 GLN 77 479 479 GLN GLN A . n A 1 78 LEU 78 480 480 LEU LEU A . n A 1 79 ILE 79 481 481 ILE ILE A . n A 1 80 ASN 80 482 482 ASN ASN A . n A 1 81 TYR 81 483 483 TYR TYR A . n A 1 82 THR 82 484 484 THR THR A . n A 1 83 LYS 83 485 485 LYS LYS A . n A 1 84 SER 84 486 486 SER SER A . n A 1 85 GLY 85 487 487 GLY GLY A . n A 1 86 LYS 86 488 488 LYS LYS A . n A 1 87 LYS 87 489 489 LYS LYS A . n A 1 88 PHE 88 490 490 PHE PHE A . n A 1 89 TRP 89 491 491 TRP TRP A . n A 1 90 ASN 90 492 492 ASN ASN A . n A 1 91 LEU 91 493 493 LEU LEU A . n A 1 92 PHE 92 494 494 PHE PHE A . n A 1 93 HIS 93 495 495 HIS HIS A . n A 1 94 LEU 94 496 496 LEU LEU A . n A 1 95 GLN 95 497 497 GLN GLN A . n A 1 96 PRO 96 498 498 PRO PRO A . n A 1 97 MET 97 499 499 MET MET A . n A 1 98 ARG 98 500 500 ARG ARG A . n A 1 99 ASP 99 501 501 ASP ASP A . n A 1 100 GLN 100 502 502 GLN GLN A . n A 1 101 LYS 101 503 503 LYS LYS A . n A 1 102 GLY 102 504 504 GLY GLY A . n A 1 103 ASP 103 505 505 ASP ASP A . n A 1 104 VAL 104 506 506 VAL VAL A . n A 1 105 GLN 105 507 507 GLN GLN A . n A 1 106 TYR 106 508 508 TYR TYR A . n A 1 107 PHE 107 509 509 PHE PHE A . n A 1 108 ILE 108 510 510 ILE ILE A . n A 1 109 GLY 109 511 511 GLY GLY A . n A 1 110 VAL 110 512 512 VAL VAL A . n A 1 111 GLN 111 513 513 GLN GLN A . n A 1 112 LEU 112 514 514 LEU LEU A . n A 1 113 ASP 113 515 515 ASP ASP A . n A 1 114 GLY 114 516 516 GLY GLY A . n A 1 115 THR 115 517 517 THR THR A . n A 1 116 GLU 116 518 518 GLU GLU A . n A 1 117 HIS 117 519 519 HIS HIS A . n A 1 118 VAL 118 520 520 VAL VAL A . n A 1 119 ARG 119 521 521 ARG ARG A . n A 1 120 ASP 120 522 522 ASP ASP A . n A 1 121 ALA 121 523 523 ALA ALA A . n A 1 122 ALA 122 524 524 ALA ALA A . n A 1 123 GLU 123 525 525 GLU GLU A . n A 1 124 ARG 124 526 526 ARG ARG A . n A 1 125 GLU 125 527 527 GLU GLU A . n A 1 126 GLY 126 528 528 GLY GLY A . n A 1 127 VAL 127 529 529 VAL VAL A . n A 1 128 MET 128 530 530 MET MET A . n A 1 129 LEU 129 531 531 LEU LEU A . n A 1 130 ILE 130 532 532 ILE ILE A . n A 1 131 LYS 131 533 533 LYS LYS A . n A 1 132 LYS 132 534 534 LYS LYS A . n A 1 133 THR 133 535 535 THR THR A . n A 1 134 ALA 134 536 536 ALA ALA A . n A 1 135 GLU 135 537 537 GLU GLU A . n A 1 136 ASN 136 538 538 ASN ASN A . n A 1 137 ILE 137 539 539 ILE ILE A . n A 1 138 ASP 138 540 540 ASP ASP A . n A 1 139 GLU 139 541 541 GLU GLU A . n A 1 140 ALA 140 542 542 ALA ALA A . n A 1 141 ALA 141 543 543 ALA ALA A . n A 1 142 LYS 142 544 544 LYS LYS A . n A 1 143 GLU 143 545 545 GLU GLU A . n A 1 144 LEU 144 546 546 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 1547 1547 FMN FMN A . C 3 GOL 1 1548 1548 GOL GOL A . D 3 GOL 1 1549 1549 GOL GOL A . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . E 4 HOH 35 2035 2035 HOH HOH A . E 4 HOH 36 2036 2036 HOH HOH A . E 4 HOH 37 2037 2037 HOH HOH A . E 4 HOH 38 2038 2038 HOH HOH A . E 4 HOH 39 2039 2039 HOH HOH A . E 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 41 2041 2041 HOH HOH A . E 4 HOH 42 2042 2042 HOH HOH A . E 4 HOH 43 2043 2043 HOH HOH A . E 4 HOH 44 2044 2044 HOH HOH A . E 4 HOH 45 2045 2045 HOH HOH A . E 4 HOH 46 2046 2046 HOH HOH A . E 4 HOH 47 2047 2047 HOH HOH A . E 4 HOH 48 2048 2048 HOH HOH A . E 4 HOH 49 2049 2049 HOH HOH A . E 4 HOH 50 2050 2050 HOH HOH A . E 4 HOH 51 2051 2051 HOH HOH A . E 4 HOH 52 2052 2052 HOH HOH A . E 4 HOH 53 2053 2053 HOH HOH A . E 4 HOH 54 2054 2054 HOH HOH A . E 4 HOH 55 2055 2055 HOH HOH A . E 4 HOH 56 2056 2056 HOH HOH A . E 4 HOH 57 2057 2057 HOH HOH A . E 4 HOH 58 2058 2058 HOH HOH A . E 4 HOH 59 2059 2059 HOH HOH A . E 4 HOH 60 2060 2060 HOH HOH A . E 4 HOH 61 2061 2061 HOH HOH A . E 4 HOH 62 2062 2062 HOH HOH A . E 4 HOH 63 2063 2063 HOH HOH A . E 4 HOH 64 2064 2064 HOH HOH A . E 4 HOH 65 2065 2065 HOH HOH A . E 4 HOH 66 2066 2066 HOH HOH A . E 4 HOH 67 2067 2067 HOH HOH A . E 4 HOH 68 2068 2068 HOH HOH A . E 4 HOH 69 2069 2069 HOH HOH A . E 4 HOH 70 2070 2070 HOH HOH A . E 4 HOH 71 2071 2071 HOH HOH A . E 4 HOH 72 2072 2072 HOH HOH A . E 4 HOH 73 2073 2073 HOH HOH A . E 4 HOH 74 2074 2074 HOH HOH A . E 4 HOH 75 2075 2075 HOH HOH A . E 4 HOH 76 2076 2076 HOH HOH A . E 4 HOH 77 2077 2077 HOH HOH A . E 4 HOH 78 2078 2078 HOH HOH A . E 4 HOH 79 2079 2079 HOH HOH A . E 4 HOH 80 2080 2080 HOH HOH A . E 4 HOH 81 2081 2081 HOH HOH A . E 4 HOH 82 2082 2082 HOH HOH A . E 4 HOH 83 2083 2083 HOH HOH A . E 4 HOH 84 2084 2084 HOH HOH A . E 4 HOH 85 2085 2085 HOH HOH A . E 4 HOH 86 2086 2086 HOH HOH A . E 4 HOH 87 2087 2087 HOH HOH A . E 4 HOH 88 2088 2088 HOH HOH A . E 4 HOH 89 2089 2089 HOH HOH A . E 4 HOH 90 2090 2090 HOH HOH A . E 4 HOH 91 2091 2091 HOH HOH A . E 4 HOH 92 2092 2092 HOH HOH A . E 4 HOH 93 2093 2093 HOH HOH A . E 4 HOH 94 2094 2094 HOH HOH A . E 4 HOH 95 2095 2095 HOH HOH A . E 4 HOH 96 2096 2096 HOH HOH A . E 4 HOH 97 2097 2097 HOH HOH A . E 4 HOH 98 2098 2098 HOH HOH A . E 4 HOH 99 2099 2099 HOH HOH A . E 4 HOH 100 2100 2100 HOH HOH A . E 4 HOH 101 2101 2101 HOH HOH A . E 4 HOH 102 2102 2102 HOH HOH A . E 4 HOH 103 2103 2103 HOH HOH A . E 4 HOH 104 2104 2104 HOH HOH A . E 4 HOH 105 2105 2105 HOH HOH A . E 4 HOH 106 2106 2106 HOH HOH A . E 4 HOH 107 2107 2107 HOH HOH A . E 4 HOH 108 2108 2108 HOH HOH A . E 4 HOH 109 2109 2109 HOH HOH A . E 4 HOH 110 2110 2110 HOH HOH A . E 4 HOH 111 2111 2111 HOH HOH A . E 4 HOH 112 2112 2112 HOH HOH A . E 4 HOH 113 2113 2113 HOH HOH A . E 4 HOH 114 2114 2114 HOH HOH A . E 4 HOH 115 2115 2115 HOH HOH A . E 4 HOH 116 2116 2116 HOH HOH A . E 4 HOH 117 2117 2117 HOH HOH A . E 4 HOH 118 2118 2118 HOH HOH A . E 4 HOH 119 2119 2119 HOH HOH A . E 4 HOH 120 2120 2120 HOH HOH A . E 4 HOH 121 2121 2121 HOH HOH A . E 4 HOH 122 2122 2122 HOH HOH A . E 4 HOH 123 2123 2123 HOH HOH A . E 4 HOH 124 2124 2124 HOH HOH A . E 4 HOH 125 2125 2125 HOH HOH A . E 4 HOH 126 2126 2126 HOH HOH A . E 4 HOH 127 2127 2127 HOH HOH A . E 4 HOH 128 2128 2128 HOH HOH A . E 4 HOH 129 2129 2129 HOH HOH A . E 4 HOH 130 2130 2130 HOH HOH A . E 4 HOH 131 2131 2131 HOH HOH A . E 4 HOH 132 2132 2132 HOH HOH A . E 4 HOH 133 2133 2133 HOH HOH A . E 4 HOH 134 2134 2134 HOH HOH A . E 4 HOH 135 2135 2135 HOH HOH A . E 4 HOH 136 2136 2136 HOH HOH A . E 4 HOH 137 2137 2137 HOH HOH A . E 4 HOH 138 2138 2138 HOH HOH A . E 4 HOH 139 2139 2139 HOH HOH A . E 4 HOH 140 2140 2140 HOH HOH A . E 4 HOH 141 2141 2141 HOH HOH A . E 4 HOH 142 2142 2142 HOH HOH A . E 4 HOH 143 2143 2143 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Experimental preparation' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' reflns 4 3 'Structure model' reflns_shell # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_sf' 2 3 'Structure model' '_reflns.pdbx_Rmerge_I_obs' 3 3 'Structure model' '_reflns_shell.Rmerge_I_obs' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 2.9870 -6.0640 10.2310 -0.0861 -0.0251 -0.0260 -0.0383 -0.0341 0.0307 6.9435 6.9683 8.9959 2.4138 -2.9021 -1.7684 0.0292 0.0387 -0.0934 -0.0507 0.1144 0.5698 0.2525 -0.6813 -0.1436 'X-RAY DIFFRACTION' 2 ? refined 16.6210 1.1550 7.1400 -0.0237 -0.0438 -0.0642 -0.0134 -0.0165 0.0008 1.4084 1.1555 1.3164 -0.2829 -0.4825 -0.1869 0.0172 -0.0907 0.0098 0.0442 -0.0294 -0.0223 -0.0590 0.0651 0.0122 'X-RAY DIFFRACTION' 3 ? refined 9.5900 -0.2360 -5.1140 -0.0019 -0.0550 -0.0819 -0.0076 -0.0430 -0.0093 2.1354 1.1313 4.0359 -0.4745 -0.5484 0.0019 0.0013 0.0580 0.0402 -0.0356 0.0589 0.0202 -0.0175 -0.0407 -0.0602 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 403 ? ? A 414 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 415 ? ? A 516 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 517 ? ? A 546 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.2.0019 ? 1 ? ? ? ? HKL-2000 'data reduction' . ? 2 ? ? ? ? HKL-2000 'data scaling' . ? 3 ? ? ? ? AMoRE phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 2V1A _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'PHE403 (VECTOR RESIDUES) DOES NOT BELONG TO LOV2 SEQUENCE' # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 522 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 48.76 _pdbx_validate_torsion.psi -122.67 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 GLYCEROL GOL 4 water HOH #