data_2V1T # _entry.id 2V1T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2V1T PDBE EBI-32622 WWPDB D_1290032622 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2007-06-12 _pdbx_database_PDB_obs_spr.pdb_id 2V1T _pdbx_database_PDB_obs_spr.replace_pdb_id 1WT4 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1OM2 unspecified ;SOLUTION NMR STRUCTURE OF THE MITOCHONDRIAL PROTEIN IMPORTRECEPTOR TOM20 FROM RAT IN A COMPLEX WITH A PRESEQUENCEPEPTIDE DERIVED FROM RAT ALDEHYDE DEHYDROGENASE (ALDH) ; PDB 1WT4 unspecified 'CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX' PDB 2CUV unspecified 'CRYSTAL STRUCTURE OF DISULFIDE BOND TETHERED TOM20-PRESEQUENCE COMPLEXES' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V1T _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-05-29 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Obita, T.' 1 'Igura, M.' 2 'Ose, T.' 3 'Endo, T.' 4 'Maenaka, K.' 5 'Kohda, D.' 6 # _citation.id primary _citation.title 'Tom20 Recognizes Mitochondrial Presequences Through Dynamic Equilibrium Among Multiple Bound States.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 26 _citation.page_first 4777 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17948058 _citation.pdbx_database_id_DOI 10.1038/SJ.EMBOJ.7601888 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Saitoh, T.' 1 primary 'Igura, M.' 2 primary 'Obita, T.' 3 primary 'Ose, T.' 4 primary 'Kojima, R.' 5 primary 'Maenaka, K.' 6 primary 'Endo, T.' 7 primary 'Kohda, D.' 8 # _cell.entry_id 2V1T _cell.length_a 33.629 _cell.length_b 27.639 _cell.length_c 70.967 _cell.angle_alpha 90.00 _cell.angle_beta 103.07 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V1T _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG' 8069.077 2 ? ? 'CYTOSOLIC DOMAIN, RESIDUES 59-126' ? 2 polymer syn 'ALDEHYDE DEHYDROGENASE' 1301.564 2 1.2.1.3 YES 'C-TERMINAL HALF OF THE PRESEQUENCE OF MITOCHONDRIAL PRECURSOR, RESIDUES 12-24' ? 3 water nat water 18.015 168 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'MITOCHONDRIAL 20 KDA OUTER MEMBRANE PROTEIN, OUTER MITOCHONDRIAL MEMBRANE RECEPTOR TOM20' 2 'ALDH CLASS 2, ALDH1, ALDH-E2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes 'GPLGSDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQ(MSE)LLTKL' GPLGSDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKL A,B ? 2 'polypeptide(L)' no yes 'GPRLSRLLSAAG(CY3)' GPRLSRLLSAAGC C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 LEU n 1 8 LYS n 1 9 ASP n 1 10 ALA n 1 11 GLU n 1 12 ALA n 1 13 VAL n 1 14 GLN n 1 15 LYS n 1 16 PHE n 1 17 PHE n 1 18 LEU n 1 19 GLU n 1 20 GLU n 1 21 ILE n 1 22 GLN n 1 23 LEU n 1 24 GLY n 1 25 GLU n 1 26 GLU n 1 27 LEU n 1 28 LEU n 1 29 ALA n 1 30 GLN n 1 31 GLY n 1 32 ASP n 1 33 TYR n 1 34 GLU n 1 35 LYS n 1 36 GLY n 1 37 VAL n 1 38 ASP n 1 39 HIS n 1 40 LEU n 1 41 THR n 1 42 ASN n 1 43 ALA n 1 44 ILE n 1 45 ALA n 1 46 VAL n 1 47 CYS n 1 48 GLY n 1 49 GLN n 1 50 PRO n 1 51 GLN n 1 52 GLN n 1 53 LEU n 1 54 LEU n 1 55 GLN n 1 56 VAL n 1 57 LEU n 1 58 GLN n 1 59 GLN n 1 60 THR n 1 61 LEU n 1 62 PRO n 1 63 PRO n 1 64 PRO n 1 65 VAL n 1 66 PHE n 1 67 GLN n 1 68 MSE n 1 69 LEU n 1 70 LEU n 1 71 THR n 1 72 LYS n 1 73 LEU n 2 1 GLY n 2 2 PRO n 2 3 ARG n 2 4 LEU n 2 5 SER n 2 6 ARG n 2 7 LEU n 2 8 LEU n 2 9 SER n 2 10 ALA n 2 11 ALA n 2 12 GLY n 2 13 CY3 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name RAT _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RATTUS NORVEGICUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX-6P-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'RATTUS NORVEGICUS' _pdbx_entity_src_syn.organism_common_name RAT _pdbx_entity_src_syn.ncbi_taxonomy_id 10116 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V1T 1 ? ? 2V1T ? 2 UNP TOM20_RAT 1 ? ? Q62760 ? 3 UNP ALDH2_RAT 2 ? ? P11884 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V1T A 1 ? 5 ? 2V1T 54 ? 58 ? 54 58 2 2 2V1T A 6 ? 73 ? Q62760 59 ? 126 ? 59 126 3 1 2V1T B 1 ? 5 ? 2V1T 54 ? 58 ? 54 58 4 2 2V1T B 6 ? 73 ? Q62760 59 ? 126 ? 59 126 5 3 2V1T C 1 ? 13 ? P11884 12 ? 24 ? 12 24 6 3 2V1T D 1 ? 13 ? P11884 12 ? 24 ? 12 24 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 5 2V1T GLY C 12 ? UNP P11884 ALA 23 'engineered mutation' 23 1 5 2V1T CY3 C 13 ? UNP P11884 THR 24 'engineered mutation' 24 2 6 2V1T GLY D 12 ? UNP P11884 ALA 23 'engineered mutation' 23 3 6 2V1T CY3 D 13 ? UNP P11884 THR 24 'engineered mutation' 24 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CY3 'L-peptide linking' n 2-AMINO-3-MERCAPTO-PROPIONAMIDE ? 'C3 H8 N2 O S' 120.173 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V1T _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.7 _exptl_crystal.density_percent_sol 30 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PEG 6000, AMMONIUM CHLORIDE, PH 7.0' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2004-03-04 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9838 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL40B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL40B2 _diffrn_source.pdbx_wavelength 0.9838 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V1T _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.900 _reflns.number_obs 9958 _reflns.number_all ? _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.06000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.2000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.100 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.98 _reflns_shell.percent_possible_all 93.2 _reflns_shell.Rmerge_I_obs 0.19000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.400 _reflns_shell.pdbx_redundancy 2.60 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V1T _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 8906 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.60 _refine.ls_d_res_high 1.92 _refine.ls_percent_reflns_obs 97.5 _refine.ls_R_factor_obs 0.184 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.178 _refine.ls_R_factor_R_free 0.240 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.000 _refine.ls_number_reflns_R_free 879 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.919 _refine.B_iso_mean 14.86 _refine.aniso_B[1][1] 1.12000 _refine.aniso_B[2][2] -0.07000 _refine.aniso_B[3][3] -0.89000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.37000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.242 _refine.pdbx_overall_ESU_R_Free 0.193 _refine.overall_SU_ML 0.134 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.919 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1279 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 168 _refine_hist.number_atoms_total 1447 _refine_hist.d_res_high 1.92 _refine_hist.d_res_low 32.60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1298 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 878 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.423 2.029 ? 1749 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.032 3.002 ? 2171 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.080 5.000 ? 161 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.479 26.786 ? 56 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.369 15.000 ? 231 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.881 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 206 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1416 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 214 'X-RAY DIFFRACTION' ? r_nbd_refined 0.220 0.200 ? 338 'X-RAY DIFFRACTION' ? r_nbd_other 0.172 0.200 ? 931 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.165 0.200 ? 647 'X-RAY DIFFRACTION' ? r_nbtor_other 0.098 0.200 ? 629 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.219 0.200 ? 103 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.204 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.275 0.200 ? 84 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.182 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.121 1.500 ? 1050 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.116 2.000 ? 1323 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.124 3.000 ? 491 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.874 4.500 ? 426 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.92 _refine_ls_shell.d_res_low 1.97 _refine_ls_shell.number_reflns_R_work 639 _refine_ls_shell.R_factor_R_work 0.2190 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.843620 -0.211820 0.493390 -0.168870 -0.976940 -0.130660 0.509690 0.026910 -0.859940 -8.88722 15.64339 33.57258 2 given ? 0.859380 0.005700 0.511310 0.007780 -0.999970 -0.001920 0.511280 0.005630 -0.859400 -10.43461 12.34250 34.20483 # _struct.entry_id 2V1T _struct.title 'CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX' _struct.pdbx_descriptor 'MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG, ALDEHYDE DEHYDROGENASE (E.C.1.2.1.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V1T _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;OUTER MEMBRANE, TRANSIT PEPTIDE, PHOSPHORYLATION, MITOCHONDRION, TRANSMEMBRANE, OXIDOREDUCTASE, PROTEIN TRANSPORT, NAD, MEMBRANE, TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 6 ? GLY A 31 ? ASP A 59 GLY A 84 1 ? 26 HELX_P HELX_P2 2 ASP A 32 ? VAL A 46 ? ASP A 85 VAL A 99 1 ? 15 HELX_P HELX_P3 3 PRO A 50 ? LEU A 61 ? PRO A 103 LEU A 114 1 ? 12 HELX_P HELX_P4 4 PRO A 62 ? LEU A 73 ? PRO A 115 LEU A 126 1 ? 12 HELX_P HELX_P5 5 GLU B 11 ? GLN B 30 ? GLU B 64 GLN B 83 1 ? 20 HELX_P HELX_P6 6 ASP B 32 ? VAL B 46 ? ASP B 85 VAL B 99 1 ? 15 HELX_P HELX_P7 7 PRO B 50 ? LEU B 61 ? PRO B 103 LEU B 114 1 ? 12 HELX_P HELX_P8 8 PRO B 62 ? LYS B 72 ? PRO B 115 LYS B 125 1 ? 11 HELX_P HELX_P9 9 GLY C 1 ? ARG C 3 ? GLY C 12 ARG C 14 5 ? 3 HELX_P HELX_P10 10 LEU C 4 ? GLY C 12 ? LEU C 15 GLY C 23 1 ? 9 HELX_P HELX_P11 11 ARG D 3 ? GLY D 12 ? ARG D 14 GLY D 23 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 47 SG ? ? ? 1_555 C CY3 13 SG ? ? A CYS 100 C CY3 24 1_555 ? ? ? ? ? ? ? 2.040 ? disulf2 disulf ? ? B CYS 47 SG ? ? ? 1_555 D CY3 13 SG ? ? B CYS 100 D CY3 24 1_555 ? ? ? ? ? ? ? 2.035 ? covale1 covale ? ? A GLN 67 C ? ? ? 1_555 A MSE 68 N ? ? A GLN 120 A MSE 121 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A MSE 68 C ? ? ? 1_555 A LEU 69 N ? ? A MSE 121 A LEU 122 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? B GLN 67 C ? ? ? 1_555 B MSE 68 N ? ? B GLN 120 B MSE 121 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? B MSE 68 C ? ? ? 1_555 B LEU 69 N ? ? B MSE 121 B LEU 122 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale ? ? C GLY 12 C ? ? ? 1_555 C CY3 13 N ? ? C GLY 23 C CY3 24 1_555 ? ? ? ? ? ? ? 1.339 ? covale6 covale ? ? C CY3 13 SG ? ? ? 1_555 A CYS 47 SG ? ? C CY3 24 A CYS 100 1_555 ? ? ? ? ? ? ? 2.040 ? covale7 covale ? ? D GLY 12 C ? ? ? 1_555 D CY3 13 N ? ? D GLY 23 D CY3 24 1_555 ? ? ? ? ? ? ? 1.324 ? covale8 covale ? ? D CY3 13 SG ? ? ? 1_555 B CYS 47 SG ? ? D CY3 24 B CYS 100 1_555 ? ? ? ? ? ? ? 2.035 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _database_PDB_matrix.entry_id 2V1T _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V1T _atom_sites.fract_transf_matrix[1][1] 0.029736 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006903 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.036181 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014466 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 54 54 GLY GLY A . n A 1 2 PRO 2 55 55 PRO PRO A . n A 1 3 LEU 3 56 56 LEU LEU A . n A 1 4 GLY 4 57 57 GLY GLY A . n A 1 5 SER 5 58 58 SER SER A . n A 1 6 ASP 6 59 59 ASP ASP A . n A 1 7 LEU 7 60 60 LEU LEU A . n A 1 8 LYS 8 61 61 LYS LYS A . n A 1 9 ASP 9 62 62 ASP ASP A . n A 1 10 ALA 10 63 63 ALA ALA A . n A 1 11 GLU 11 64 64 GLU GLU A . n A 1 12 ALA 12 65 65 ALA ALA A . n A 1 13 VAL 13 66 66 VAL VAL A . n A 1 14 GLN 14 67 67 GLN GLN A . n A 1 15 LYS 15 68 68 LYS LYS A . n A 1 16 PHE 16 69 69 PHE PHE A . n A 1 17 PHE 17 70 70 PHE PHE A . n A 1 18 LEU 18 71 71 LEU LEU A . n A 1 19 GLU 19 72 72 GLU GLU A . n A 1 20 GLU 20 73 73 GLU GLU A . n A 1 21 ILE 21 74 74 ILE ILE A . n A 1 22 GLN 22 75 75 GLN GLN A . n A 1 23 LEU 23 76 76 LEU LEU A . n A 1 24 GLY 24 77 77 GLY GLY A . n A 1 25 GLU 25 78 78 GLU GLU A . n A 1 26 GLU 26 79 79 GLU GLU A . n A 1 27 LEU 27 80 80 LEU LEU A . n A 1 28 LEU 28 81 81 LEU LEU A . n A 1 29 ALA 29 82 82 ALA ALA A . n A 1 30 GLN 30 83 83 GLN GLN A . n A 1 31 GLY 31 84 84 GLY GLY A . n A 1 32 ASP 32 85 85 ASP ASP A . n A 1 33 TYR 33 86 86 TYR TYR A . n A 1 34 GLU 34 87 87 GLU GLU A . n A 1 35 LYS 35 88 88 LYS LYS A . n A 1 36 GLY 36 89 89 GLY GLY A . n A 1 37 VAL 37 90 90 VAL VAL A . n A 1 38 ASP 38 91 91 ASP ASP A . n A 1 39 HIS 39 92 92 HIS HIS A . n A 1 40 LEU 40 93 93 LEU LEU A . n A 1 41 THR 41 94 94 THR THR A . n A 1 42 ASN 42 95 95 ASN ASN A . n A 1 43 ALA 43 96 96 ALA ALA A . n A 1 44 ILE 44 97 97 ILE ILE A . n A 1 45 ALA 45 98 98 ALA ALA A . n A 1 46 VAL 46 99 99 VAL VAL A . n A 1 47 CYS 47 100 100 CYS CYS A . n A 1 48 GLY 48 101 101 GLY GLY A . n A 1 49 GLN 49 102 102 GLN GLN A . n A 1 50 PRO 50 103 103 PRO PRO A . n A 1 51 GLN 51 104 104 GLN GLN A . n A 1 52 GLN 52 105 105 GLN GLN A . n A 1 53 LEU 53 106 106 LEU LEU A . n A 1 54 LEU 54 107 107 LEU LEU A . n A 1 55 GLN 55 108 108 GLN GLN A . n A 1 56 VAL 56 109 109 VAL VAL A . n A 1 57 LEU 57 110 110 LEU LEU A . n A 1 58 GLN 58 111 111 GLN GLN A . n A 1 59 GLN 59 112 112 GLN GLN A . n A 1 60 THR 60 113 113 THR THR A . n A 1 61 LEU 61 114 114 LEU LEU A . n A 1 62 PRO 62 115 115 PRO PRO A . n A 1 63 PRO 63 116 116 PRO PRO A . n A 1 64 PRO 64 117 117 PRO PRO A . n A 1 65 VAL 65 118 118 VAL VAL A . n A 1 66 PHE 66 119 119 PHE PHE A . n A 1 67 GLN 67 120 120 GLN GLN A . n A 1 68 MSE 68 121 121 MSE MSE A . n A 1 69 LEU 69 122 122 LEU LEU A . n A 1 70 LEU 70 123 123 LEU LEU A . n A 1 71 THR 71 124 124 THR THR A . n A 1 72 LYS 72 125 125 LYS LYS A . n A 1 73 LEU 73 126 126 LEU LEU A . n B 1 1 GLY 1 54 ? ? ? B . n B 1 2 PRO 2 55 ? ? ? B . n B 1 3 LEU 3 56 ? ? ? B . n B 1 4 GLY 4 57 ? ? ? B . n B 1 5 SER 5 58 ? ? ? B . n B 1 6 ASP 6 59 59 ASP ASP B . n B 1 7 LEU 7 60 60 LEU LEU B . n B 1 8 LYS 8 61 61 LYS LYS B . n B 1 9 ASP 9 62 62 ASP ASP B . n B 1 10 ALA 10 63 63 ALA ALA B . n B 1 11 GLU 11 64 64 GLU GLU B . n B 1 12 ALA 12 65 65 ALA ALA B . n B 1 13 VAL 13 66 66 VAL VAL B . n B 1 14 GLN 14 67 67 GLN GLN B . n B 1 15 LYS 15 68 68 LYS LYS B . n B 1 16 PHE 16 69 69 PHE PHE B . n B 1 17 PHE 17 70 70 PHE PHE B . n B 1 18 LEU 18 71 71 LEU LEU B . n B 1 19 GLU 19 72 72 GLU GLU B . n B 1 20 GLU 20 73 73 GLU GLU B . n B 1 21 ILE 21 74 74 ILE ILE B . n B 1 22 GLN 22 75 75 GLN GLN B . n B 1 23 LEU 23 76 76 LEU LEU B . n B 1 24 GLY 24 77 77 GLY GLY B . n B 1 25 GLU 25 78 78 GLU GLU B . n B 1 26 GLU 26 79 79 GLU GLU B . n B 1 27 LEU 27 80 80 LEU LEU B . n B 1 28 LEU 28 81 81 LEU LEU B . n B 1 29 ALA 29 82 82 ALA ALA B . n B 1 30 GLN 30 83 83 GLN GLN B . n B 1 31 GLY 31 84 84 GLY GLY B . n B 1 32 ASP 32 85 85 ASP ASP B . n B 1 33 TYR 33 86 86 TYR TYR B . n B 1 34 GLU 34 87 87 GLU GLU B . n B 1 35 LYS 35 88 88 LYS LYS B . n B 1 36 GLY 36 89 89 GLY GLY B . n B 1 37 VAL 37 90 90 VAL VAL B . n B 1 38 ASP 38 91 91 ASP ASP B . n B 1 39 HIS 39 92 92 HIS HIS B . n B 1 40 LEU 40 93 93 LEU LEU B . n B 1 41 THR 41 94 94 THR THR B . n B 1 42 ASN 42 95 95 ASN ASN B . n B 1 43 ALA 43 96 96 ALA ALA B . n B 1 44 ILE 44 97 97 ILE ILE B . n B 1 45 ALA 45 98 98 ALA ALA B . n B 1 46 VAL 46 99 99 VAL VAL B . n B 1 47 CYS 47 100 100 CYS CYS B . n B 1 48 GLY 48 101 101 GLY GLY B . n B 1 49 GLN 49 102 102 GLN GLN B . n B 1 50 PRO 50 103 103 PRO PRO B . n B 1 51 GLN 51 104 104 GLN GLN B . n B 1 52 GLN 52 105 105 GLN GLN B . n B 1 53 LEU 53 106 106 LEU LEU B . n B 1 54 LEU 54 107 107 LEU LEU B . n B 1 55 GLN 55 108 108 GLN GLN B . n B 1 56 VAL 56 109 109 VAL VAL B . n B 1 57 LEU 57 110 110 LEU LEU B . n B 1 58 GLN 58 111 111 GLN GLN B . n B 1 59 GLN 59 112 112 GLN GLN B . n B 1 60 THR 60 113 113 THR THR B . n B 1 61 LEU 61 114 114 LEU LEU B . n B 1 62 PRO 62 115 115 PRO PRO B . n B 1 63 PRO 63 116 116 PRO PRO B . n B 1 64 PRO 64 117 117 PRO PRO B . n B 1 65 VAL 65 118 118 VAL VAL B . n B 1 66 PHE 66 119 119 PHE PHE B . n B 1 67 GLN 67 120 120 GLN GLN B . n B 1 68 MSE 68 121 121 MSE MSE B . n B 1 69 LEU 69 122 122 LEU LEU B . n B 1 70 LEU 70 123 123 LEU LEU B . n B 1 71 THR 71 124 124 THR THR B . n B 1 72 LYS 72 125 125 LYS LYS B . n B 1 73 LEU 73 126 126 LEU LEU B . n C 2 1 GLY 1 12 12 GLY GLY C . n C 2 2 PRO 2 13 13 PRO PRO C . n C 2 3 ARG 3 14 14 ARG ARG C . n C 2 4 LEU 4 15 15 LEU LEU C . n C 2 5 SER 5 16 16 SER SER C . n C 2 6 ARG 6 17 17 ARG ARG C . n C 2 7 LEU 7 18 18 LEU LEU C . n C 2 8 LEU 8 19 19 LEU LEU C . n C 2 9 SER 9 20 20 SER SER C . n C 2 10 ALA 10 21 21 ALA ALA C . n C 2 11 ALA 11 22 22 ALA ALA C . n C 2 12 GLY 12 23 23 GLY GLY C . n C 2 13 CY3 13 24 24 CY3 CY3 C . n D 2 1 GLY 1 12 12 GLY GLY D . n D 2 2 PRO 2 13 13 PRO PRO D . n D 2 3 ARG 3 14 14 ARG ARG D . n D 2 4 LEU 4 15 15 LEU LEU D . n D 2 5 SER 5 16 16 SER SER D . n D 2 6 ARG 6 17 17 ARG ARG D . n D 2 7 LEU 7 18 18 LEU LEU D . n D 2 8 LEU 8 19 19 LEU LEU D . n D 2 9 SER 9 20 20 SER SER D . n D 2 10 ALA 10 21 21 ALA ALA D . n D 2 11 ALA 11 22 22 ALA ALA D . n D 2 12 GLY 12 23 23 GLY GLY D . n D 2 13 CY3 13 24 24 CY3 CY3 D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 2001 2001 HOH HOH A . E 3 HOH 2 2002 2002 HOH HOH A . E 3 HOH 3 2003 2003 HOH HOH A . E 3 HOH 4 2004 2004 HOH HOH A . E 3 HOH 5 2005 2005 HOH HOH A . E 3 HOH 6 2006 2006 HOH HOH A . E 3 HOH 7 2007 2007 HOH HOH A . E 3 HOH 8 2008 2008 HOH HOH A . E 3 HOH 9 2009 2009 HOH HOH A . E 3 HOH 10 2010 2010 HOH HOH A . E 3 HOH 11 2011 2011 HOH HOH A . E 3 HOH 12 2012 2012 HOH HOH A . E 3 HOH 13 2013 2013 HOH HOH A . E 3 HOH 14 2014 2014 HOH HOH A . E 3 HOH 15 2015 2015 HOH HOH A . E 3 HOH 16 2016 2016 HOH HOH A . E 3 HOH 17 2017 2017 HOH HOH A . E 3 HOH 18 2018 2018 HOH HOH A . E 3 HOH 19 2019 2019 HOH HOH A . E 3 HOH 20 2020 2020 HOH HOH A . E 3 HOH 21 2021 2021 HOH HOH A . E 3 HOH 22 2022 2022 HOH HOH A . E 3 HOH 23 2023 2023 HOH HOH A . E 3 HOH 24 2024 2024 HOH HOH A . E 3 HOH 25 2025 2025 HOH HOH A . E 3 HOH 26 2026 2026 HOH HOH A . E 3 HOH 27 2027 2027 HOH HOH A . E 3 HOH 28 2028 2028 HOH HOH A . E 3 HOH 29 2029 2029 HOH HOH A . E 3 HOH 30 2030 2030 HOH HOH A . E 3 HOH 31 2031 2031 HOH HOH A . E 3 HOH 32 2032 2032 HOH HOH A . E 3 HOH 33 2033 2033 HOH HOH A . E 3 HOH 34 2034 2034 HOH HOH A . E 3 HOH 35 2035 2035 HOH HOH A . E 3 HOH 36 2036 2036 HOH HOH A . E 3 HOH 37 2037 2037 HOH HOH A . E 3 HOH 38 2038 2038 HOH HOH A . E 3 HOH 39 2039 2039 HOH HOH A . E 3 HOH 40 2040 2040 HOH HOH A . E 3 HOH 41 2041 2041 HOH HOH A . E 3 HOH 42 2042 2042 HOH HOH A . E 3 HOH 43 2043 2043 HOH HOH A . E 3 HOH 44 2044 2044 HOH HOH A . E 3 HOH 45 2045 2045 HOH HOH A . E 3 HOH 46 2046 2046 HOH HOH A . E 3 HOH 47 2047 2047 HOH HOH A . E 3 HOH 48 2048 2048 HOH HOH A . E 3 HOH 49 2049 2049 HOH HOH A . E 3 HOH 50 2050 2050 HOH HOH A . E 3 HOH 51 2051 2051 HOH HOH A . E 3 HOH 52 2052 2052 HOH HOH A . E 3 HOH 53 2053 2053 HOH HOH A . E 3 HOH 54 2054 2054 HOH HOH A . E 3 HOH 55 2055 2055 HOH HOH A . E 3 HOH 56 2056 2056 HOH HOH A . E 3 HOH 57 2057 2057 HOH HOH A . E 3 HOH 58 2058 2058 HOH HOH A . E 3 HOH 59 2059 2059 HOH HOH A . E 3 HOH 60 2060 2060 HOH HOH A . E 3 HOH 61 2061 2061 HOH HOH A . E 3 HOH 62 2062 2062 HOH HOH A . E 3 HOH 63 2063 2063 HOH HOH A . E 3 HOH 64 2064 2064 HOH HOH A . E 3 HOH 65 2065 2065 HOH HOH A . E 3 HOH 66 2066 2066 HOH HOH A . E 3 HOH 67 2067 2067 HOH HOH A . E 3 HOH 68 2068 2068 HOH HOH A . E 3 HOH 69 2069 2069 HOH HOH A . E 3 HOH 70 2070 2070 HOH HOH A . F 3 HOH 1 2001 2001 HOH HOH B . F 3 HOH 2 2002 2002 HOH HOH B . F 3 HOH 3 2003 2003 HOH HOH B . F 3 HOH 4 2004 2004 HOH HOH B . F 3 HOH 5 2005 2005 HOH HOH B . F 3 HOH 6 2006 2006 HOH HOH B . F 3 HOH 7 2007 2007 HOH HOH B . F 3 HOH 8 2008 2008 HOH HOH B . F 3 HOH 9 2009 2009 HOH HOH B . F 3 HOH 10 2010 2010 HOH HOH B . F 3 HOH 11 2011 2011 HOH HOH B . F 3 HOH 12 2012 2012 HOH HOH B . F 3 HOH 13 2013 2013 HOH HOH B . F 3 HOH 14 2014 2014 HOH HOH B . F 3 HOH 15 2015 2015 HOH HOH B . F 3 HOH 16 2016 2016 HOH HOH B . F 3 HOH 17 2017 2017 HOH HOH B . F 3 HOH 18 2018 2018 HOH HOH B . F 3 HOH 19 2019 2019 HOH HOH B . F 3 HOH 20 2020 2020 HOH HOH B . F 3 HOH 21 2021 2021 HOH HOH B . F 3 HOH 22 2022 2022 HOH HOH B . F 3 HOH 23 2023 2023 HOH HOH B . F 3 HOH 24 2024 2024 HOH HOH B . F 3 HOH 25 2025 2025 HOH HOH B . F 3 HOH 26 2026 2026 HOH HOH B . F 3 HOH 27 2027 2027 HOH HOH B . F 3 HOH 28 2028 2028 HOH HOH B . F 3 HOH 29 2029 2029 HOH HOH B . F 3 HOH 30 2030 2030 HOH HOH B . F 3 HOH 31 2031 2031 HOH HOH B . F 3 HOH 32 2032 2032 HOH HOH B . F 3 HOH 33 2033 2033 HOH HOH B . F 3 HOH 34 2034 2034 HOH HOH B . F 3 HOH 35 2035 2035 HOH HOH B . F 3 HOH 36 2036 2036 HOH HOH B . F 3 HOH 37 2037 2037 HOH HOH B . F 3 HOH 38 2038 2038 HOH HOH B . F 3 HOH 39 2039 2039 HOH HOH B . F 3 HOH 40 2040 2040 HOH HOH B . F 3 HOH 41 2041 2041 HOH HOH B . F 3 HOH 42 2042 2042 HOH HOH B . F 3 HOH 43 2043 2043 HOH HOH B . F 3 HOH 44 2044 2044 HOH HOH B . F 3 HOH 45 2045 2045 HOH HOH B . F 3 HOH 46 2046 2046 HOH HOH B . F 3 HOH 47 2047 2047 HOH HOH B . F 3 HOH 48 2048 2048 HOH HOH B . F 3 HOH 49 2049 2049 HOH HOH B . F 3 HOH 50 2050 2050 HOH HOH B . F 3 HOH 51 2051 2051 HOH HOH B . F 3 HOH 52 2052 2052 HOH HOH B . F 3 HOH 53 2053 2053 HOH HOH B . F 3 HOH 54 2054 2054 HOH HOH B . F 3 HOH 55 2055 2055 HOH HOH B . F 3 HOH 56 2056 2056 HOH HOH B . F 3 HOH 57 2057 2057 HOH HOH B . F 3 HOH 58 2058 2058 HOH HOH B . F 3 HOH 59 2059 2059 HOH HOH B . F 3 HOH 60 2060 2060 HOH HOH B . F 3 HOH 61 2061 2061 HOH HOH B . F 3 HOH 62 2062 2062 HOH HOH B . F 3 HOH 63 2063 2063 HOH HOH B . F 3 HOH 64 2064 2064 HOH HOH B . F 3 HOH 65 2065 2065 HOH HOH B . F 3 HOH 66 2066 2066 HOH HOH B . G 3 HOH 1 2001 2001 HOH HOH C . G 3 HOH 2 2002 2002 HOH HOH C . G 3 HOH 3 2003 2003 HOH HOH C . G 3 HOH 4 2004 2004 HOH HOH C . G 3 HOH 5 2005 2005 HOH HOH C . G 3 HOH 6 2006 2006 HOH HOH C . G 3 HOH 7 2007 2007 HOH HOH C . G 3 HOH 8 2008 2008 HOH HOH C . G 3 HOH 9 2009 2009 HOH HOH C . G 3 HOH 10 2010 2010 HOH HOH C . G 3 HOH 11 2011 2011 HOH HOH C . G 3 HOH 12 2012 2012 HOH HOH C . G 3 HOH 13 2013 2013 HOH HOH C . G 3 HOH 14 2014 2014 HOH HOH C . G 3 HOH 15 2015 2015 HOH HOH C . G 3 HOH 16 2016 2016 HOH HOH C . G 3 HOH 17 2017 2017 HOH HOH C . G 3 HOH 18 2018 2018 HOH HOH C . G 3 HOH 19 2019 2019 HOH HOH C . H 3 HOH 1 2001 2001 HOH HOH D . H 3 HOH 2 2002 2002 HOH HOH D . H 3 HOH 3 2003 2003 HOH HOH D . H 3 HOH 4 2004 2004 HOH HOH D . H 3 HOH 5 2005 2005 HOH HOH D . H 3 HOH 6 2006 2006 HOH HOH D . H 3 HOH 7 2007 2007 HOH HOH D . H 3 HOH 8 2008 2008 HOH HOH D . H 3 HOH 9 2009 2009 HOH HOH D . H 3 HOH 10 2010 2010 HOH HOH D . H 3 HOH 11 2011 2011 HOH HOH D . H 3 HOH 12 2012 2012 HOH HOH D . H 3 HOH 13 2013 2013 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 68 A MSE 121 ? MET SELENOMETHIONINE 2 B MSE 68 B MSE 121 ? MET SELENOMETHIONINE 3 C CY3 13 C CY3 24 ? CYS 2-AMINO-3-MERCAPTO-PROPIONAMIDE 4 D CY3 13 D CY3 24 ? CYS 2-AMINO-3-MERCAPTO-PROPIONAMIDE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS dimeric 2 2 author_and_software_defined_assembly PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,G 2 1 B,D,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-12 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -3.4780 1.7490 24.7530 -0.0017 -0.0343 -0.0171 -0.0129 -0.0003 -0.0028 0.8242 0.6178 0.9727 -0.1870 0.4822 -0.1271 0.0041 -0.0277 -0.0274 -0.0163 0.0032 -0.0168 0.0742 -0.0001 -0.0073 'X-RAY DIFFRACTION' 2 ? refined 1.1230 11.6600 9.9120 0.0085 -0.0284 -0.0288 -0.0117 -0.0051 0.0080 1.7004 0.5355 1.0081 -0.0428 -0.4218 0.6402 0.0332 0.0248 0.0467 -0.0177 0.0042 0.0004 -0.0913 0.0487 -0.0375 'X-RAY DIFFRACTION' 3 ? refined -6.4560 -8.7590 26.1540 0.0387 -0.0146 -0.0650 -0.0286 0.0292 0.0104 4.6378 5.5363 0.7108 0.1788 0.0040 0.4014 0.1002 -0.0602 -0.0252 -0.1380 -0.0053 -0.2259 -0.2000 -0.0231 -0.0949 'X-RAY DIFFRACTION' 4 ? refined -2.5060 21.0310 8.3750 0.0679 -0.0051 -0.0888 0.0140 0.0116 0.0005 2.4819 3.8335 3.9108 -0.8765 0.5862 3.0299 -0.1393 0.0674 0.1795 0.3982 0.2808 0.2471 0.0834 0.3498 -0.1415 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 54 ? ? A 126 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 59 ? ? B 126 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 12 ? ? C 24 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 12 ? ? D 24 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_entry_details.entry_id 2V1T _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN C, ALA 23 TO GLY ENGINEERED RESIDUE IN CHAIN C, THR 24 TO CY3 ENGINEERED RESIDUE IN CHAIN D, ALA 23 TO GLY ENGINEERED RESIDUE IN CHAIN D, THR 24 TO CY3 ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;GLY A 54 CLONING ARTIFACT PRO A 55 CLONING ARTIFACT LEU A 56 CLONING ARTIFACT GLY A 57 CLONING ARTIFACT SER A 58 CLONING ARTIFACT MSE A MODIFIED RESIDUE GLY B 54 CLONING ARTIFACT PRO B 55 CLONING ARTIFACT LEU B 56 CLONING ARTIFACT GLY B 57 CLONING ARTIFACT SER B 58 CLONING ARTIFACT MSE B MODIFIED RESIDUE GLY 23 ENGINEERED ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 PRO _pdbx_validate_close_contact.auth_seq_id_1 13 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2005 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2059 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2070 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_546 _pdbx_validate_symm_contact.dist 2.13 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE C ARG 14 ? ? CZ C ARG 14 ? ? NH1 C ARG 14 ? ? 123.88 120.30 3.58 0.50 N 2 1 NE C ARG 14 ? ? CZ C ARG 14 ? ? NH2 C ARG 14 ? ? 115.89 120.30 -4.41 0.50 N 3 1 O D GLY 23 ? ? C D GLY 23 ? ? N D CY3 24 ? ? 109.58 122.70 -13.12 1.60 Y 4 1 C D GLY 23 ? ? N D CY3 24 ? ? CA D CY3 24 ? ? 141.42 121.70 19.72 2.50 Y # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2025 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.78 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLY 54 ? B GLY 1 2 1 Y 1 B PRO 55 ? B PRO 2 3 1 Y 1 B LEU 56 ? B LEU 3 4 1 Y 1 B GLY 57 ? B GLY 4 5 1 Y 1 B SER 58 ? B SER 5 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #