HEADER HYDROLASE 31-MAY-07 2V1Z TITLE STRUCTURE OF A TEM-1 BETA-LACTAMASE INSERTANT ALLOSTERICALLY REGULATED TITLE 2 BY KANAMYCIN AND ANIONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE TEM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 25-38,41-286; COMPND 5 SYNONYM: TEM-1, TEM-2, TEM-3, TEM-4, TEM-5, TEM-6, TEM-8/CAZ-2, TEM- COMPND 6 16/CAZ-7, TEM-24/CAZ-6, IRT-4, PENICILLINASE ALLOSTERIC BETA- COMPND 7 LACTAMASE INSERTANT; COMPND 8 EC: 3.5.2.6; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TOP 10; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD-MYC-HIS-TETR KEYWDS HYDROLASE, INSERTION MUTANT, ANTIBIOTIC RESISTANCE, ALLOSTERIC KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR C.EVRARD,H.BARRIOS,P.MATHONET,P.SOUMILLION,J.FASTREZ,J.P.DECLERCQ REVDAT 5 13-DEC-23 2V1Z 1 REMARK LINK REVDAT 4 08-MAY-19 2V1Z 1 REMARK REVDAT 3 20-APR-11 2V1Z 1 VERSN REVDAT 2 24-FEB-09 2V1Z 1 VERSN REVDAT 1 24-JUN-08 2V1Z 0 JRNL AUTH A.N.VOLKOV,H.BARRIOS,P.MATHONET,C.EVRARD,M.UBBINK, JRNL AUTH 2 J.P.DECLERCQ,P.SOUMILLION,J.FASTREZ JRNL TITL ENGINEERING AN ALLOSTERIC BINDING SITE FOR AMINOGLYCOSIDES JRNL TITL 2 INTO TEM1-BETA-LACTAMASE. JRNL REF CHEMBIOCHEM V. 12 904 2011 JRNL REFN ISSN 1439-4227 JRNL PMID 21425229 JRNL DOI 10.1002/CBIC.201000568 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0031 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 32339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1710 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2095 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.462 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2137 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1501 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2892 ; 1.672 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3646 ; 1.065 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 5.394 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;34.593 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;12.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.851 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2351 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 419 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 481 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1641 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1061 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1083 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 214 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 2 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1749 ; 1.437 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2167 ; 1.599 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 895 ; 2.749 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 724 ; 3.973 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1290032752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97976 REMARK 200 MONOCHROMATOR : FIRST CRYSTAL FLAT AND N2 REMARK 200 COOLED. SECOND ONE SAGITALLY REMARK 200 BENT. SI(111) OR SI(311) REMARK 200 OPTICS : TWO MIRRORS ARE USED FOR REMARK 200 VERTICAL FOCUSSING. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BTL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: BIS-TRIS 0.1M PH6.2, REMARK 280 PEG6000 25%(W/V), NACL 0.3M, NAN3 0.02%(W/V). HANGING DROP: 1UL REMARK 280 PROTEIN AND 1 UL RESERVOIR, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.55650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.15650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.30450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.15650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.55650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.30450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 82 TO ILE REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 102 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ALA 182 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 237 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLN 265 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ALA 266 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 267 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 268 TO THR REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 271 REMARK 465 GLN A 272 REMARK 465 LYS A 273 REMARK 465 LEU A 274 REMARK 465 ILE A 275 REMARK 465 SER A 276 REMARK 465 GLU A 277 REMARK 465 GLU A 278 REMARK 465 ASP A 279 REMARK 465 LEU A 280 REMARK 465 ASN A 281 REMARK 465 SER A 282 REMARK 465 ALA A 283 REMARK 465 VAL A 284 REMARK 465 ASP A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 100 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 16 -56.71 -29.83 REMARK 500 MET A 49 -143.46 52.22 REMARK 500 TYR A 85 74.81 61.84 REMARK 500 LEU A 200 -125.99 -104.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 6.32 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1271 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 90 OE1 REMARK 620 2 HIS A 133 ND1 105.1 REMARK 620 3 HIS A 138 ND1 103.8 107.5 REMARK 620 4 HOH A2352 O 114.4 117.5 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1271 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AXB RELATED DB: PDB REMARK 900 TEM-1 BETA-LACTAMASE FROM ESCHERICHIA COLI INHIBITED WITH AN REMARK 900 ACYLATION TRANSITION STATE ANALOG REMARK 900 RELATED ID: 1BT5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE IMIPENEM INHIBITED TEM-1 BETA- LACTAMASE REMARK 900 FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1BTL RELATED DB: PDB REMARK 900 BETA-LACTAMASE TEM1 REMARK 900 RELATED ID: 1CK3 RELATED DB: PDB REMARK 900 N276D MUTANT OF ESCHERICHIA COLI TEM-1 BETA-LACTAMASE REMARK 900 RELATED ID: 1ERM RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A REMARK 900 DESIGNED BORONIC ACID INHIBITOR (1R)-1-ACETAMIDO-2- (3- REMARK 900 CARBOXYPHENYL)ETHANE BORONIC ACID REMARK 900 RELATED ID: 1ERO RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A REMARK 900 DESIGNED BORONIC ACID INHIBITOR (1R)-2- PHENYLACETAMIDO-2-( 3- REMARK 900 CARBOXYPHENYL)ETHYL BORONIC ACID REMARK 900 RELATED ID: 1ERQ RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A REMARK 900 DESIGNED BORONIC ACID INHIBITOR (1R)-1-ACETAMIDO-2- (3- CARBOXY-2- REMARK 900 HYDROXYPHENYL)ETHYL BORONIC ACID REMARK 900 RELATED ID: 1ESU RELATED DB: PDB REMARK 900 S235A MUTANT OF TEM1 BETA-LACTAMASE REMARK 900 RELATED ID: 1FQG RELATED DB: PDB REMARK 900 MOLECULAR STRUCTURE OF THE ACYL-ENZYME INTERMEDIATE IN TEM-1 BETA- REMARK 900 LACTAMASE REMARK 900 RELATED ID: 1JTD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BETA-LACTAMASE INHIBITOR PROTEIN-II INCOMPLEX REMARK 900 WITH TEM-1 BETA-LACTAMASE REMARK 900 RELATED ID: 1JTG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TEM-1 BETA-LACTAMASE / BETA-LACTAMASEINHIBITOR REMARK 900 PROTEIN COMPLEX REMARK 900 RELATED ID: 1JVJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF N132A MUTANT OF TEM-1 BETA-LACTAMASEIN COMPLEX REMARK 900 WITH A N- FORMIMIDOYL-THIENAMYCINE REMARK 900 RELATED ID: 1JWP RELATED DB: PDB REMARK 900 STRUCTURE OF M182T MUTANT OF TEM-1 BETA- LACTAMASE REMARK 900 RELATED ID: 1JWV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G238A MUTANT OF TEM-1 BETA-LACTAMASEIN COMPLEX REMARK 900 WITH A BORONIC ACID INHIBITOR (SEFB4) REMARK 900 RELATED ID: 1JWZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TEM-64 BETA-LACTAMASE IN COMPLEX WITHA BORONIC REMARK 900 ACID INHIBITOR (105) REMARK 900 RELATED ID: 1LHY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TEM-30 BETA-LACTAMASE AT 2.0 ANGSTROM REMARK 900 RELATED ID: 1LI0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TEM-32 BETA-LACTAMASE AT 1.6 ANGSTROM REMARK 900 RELATED ID: 1LI9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TEM-34 BETA-LACTAMASE AT 1.5 ANGSTROM REMARK 900 RELATED ID: 1M40 RELATED DB: PDB REMARK 900 ULTRA HIGH RESOLUTION CRYSTAL STRUCTURE OF TEM-1 REMARK 900 RELATED ID: 1NXY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN M182T MUTANT OFTEM-1 AND A REMARK 900 BORONIC ACID INHIBITOR (SM2) REMARK 900 RELATED ID: 1NY0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN M182T MUTANT OFTEM-1 AND A REMARK 900 BORONIC ACID INHIBITOR (NBF) REMARK 900 RELATED ID: 1NYM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN M182T MUTANT OFTEM-1 AND A REMARK 900 BORONIC ACID INHIBITOR (CXB) REMARK 900 RELATED ID: 1NYY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN M182T MUTANT OFTEM-1 AND A REMARK 900 BORONIC ACID INHIBITOR (105) REMARK 900 RELATED ID: 1PZO RELATED DB: PDB REMARK 900 TEM-1 BETA-LACTAMASE IN COMPLEX WITH A NOVEL, CORE-DISRUPTING, REMARK 900 ALLOSTERIC INHIBITOR REMARK 900 RELATED ID: 1PZP RELATED DB: PDB REMARK 900 TEM-1 BETA-LACTAMASE IN COMPLEX WITH A NOVEL, CORE-DISRUPTING, REMARK 900 ALLOSTERIC INHIBITOR REMARK 900 RELATED ID: 1S0W RELATED DB: PDB REMARK 900 1B LACTAMSE/ B LACTAMASE INHIBITOR REMARK 900 RELATED ID: 1TEM RELATED DB: PDB REMARK 900 6 ALPHA HYDROXYMETHYL PENICILLOIC ACID ACYLATED ON THE TEM-1 BETA- REMARK 900 LACTAMASE FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1XPB RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-LACTAMASE TEM1 REMARK 900 RELATED ID: 1XXM RELATED DB: PDB REMARK 900 THE MODULAR ARCHITECTURE OF PROTEIN-PROTEIN BINDING SITE REMARK 900 RELATED ID: 1YT4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TEM-76 BETA-LACTAMASE AT 1.4 ANGSTROM REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1ZG4 RELATED DB: PDB REMARK 900 TEM1 BETA LACTAMASE REMARK 900 RELATED ID: 1ZG6 RELATED DB: PDB REMARK 900 TEM1 BETA LACTAMASE MUTANT S70G DBREF 2V1Z A 1 14 UNP P62593 BLAT_ECOLI 25 38 DBREF 2V1Z A 23 268 UNP P62593 BLAT_ECOLI 41 286 SEQADV 2V1Z CYS A 15 INSERTION SEQADV 2V1Z ARG A 16 INSERTION SEQADV 2V1Z THR A 17 INSERTION SEQADV 2V1Z SER A 18 INSERTION SEQADV 2V1Z HIS A 19 INSERTION SEQADV 2V1Z ARG A 20 INSERTION SEQADV 2V1Z PRO A 21 INSERTION SEQADV 2V1Z CYS A 22 INSERTION SEQADV 2V1Z ILE A 64 UNP P62593 VAL 82 ENGINEERED MUTATION SEQADV 2V1Z LYS A 84 UNP P62593 GLU 102 ENGINEERED MUTATION SEQADV 2V1Z VAL A 164 UNP P62593 ALA 182 ENGINEERED MUTATION SEQADV 2V1Z ARG A 219 UNP P62593 GLU 237 ENGINEERED MUTATION SEQADV 2V1Z ARG A 247 UNP P62593 GLN 265 ENGINEERED MUTATION SEQADV 2V1Z LYS A 248 UNP P62593 ALA 266 ENGINEERED MUTATION SEQADV 2V1Z LYS A 249 UNP P62593 THR 267 ENGINEERED MUTATION SEQADV 2V1Z THR A 250 UNP P62593 MET 268 ENGINEERED MUTATION SEQADV 2V1Z GLY A 269 UNP P62593 EXPRESSION TAG SEQADV 2V1Z LEU A 270 UNP P62593 EXPRESSION TAG SEQADV 2V1Z GLU A 271 UNP P62593 EXPRESSION TAG SEQADV 2V1Z GLN A 272 UNP P62593 EXPRESSION TAG SEQADV 2V1Z LYS A 273 UNP P62593 EXPRESSION TAG SEQADV 2V1Z LEU A 274 UNP P62593 EXPRESSION TAG SEQADV 2V1Z ILE A 275 UNP P62593 EXPRESSION TAG SEQADV 2V1Z SER A 276 UNP P62593 EXPRESSION TAG SEQADV 2V1Z GLU A 277 UNP P62593 EXPRESSION TAG SEQADV 2V1Z GLU A 278 UNP P62593 EXPRESSION TAG SEQADV 2V1Z ASP A 279 UNP P62593 EXPRESSION TAG SEQADV 2V1Z LEU A 280 UNP P62593 EXPRESSION TAG SEQADV 2V1Z ASN A 281 UNP P62593 EXPRESSION TAG SEQADV 2V1Z SER A 282 UNP P62593 EXPRESSION TAG SEQADV 2V1Z ALA A 283 UNP P62593 EXPRESSION TAG SEQADV 2V1Z VAL A 284 UNP P62593 EXPRESSION TAG SEQADV 2V1Z ASP A 285 UNP P62593 EXPRESSION TAG SEQADV 2V1Z HIS A 286 UNP P62593 EXPRESSION TAG SEQADV 2V1Z HIS A 287 UNP P62593 EXPRESSION TAG SEQADV 2V1Z HIS A 288 UNP P62593 EXPRESSION TAG SEQADV 2V1Z HIS A 289 UNP P62593 EXPRESSION TAG SEQADV 2V1Z HIS A 290 UNP P62593 EXPRESSION TAG SEQADV 2V1Z HIS A 291 UNP P62593 EXPRESSION TAG SEQRES 1 A 291 PRO GLU THR LEU VAL LYS VAL LYS ASP ALA GLU ASP GLN SEQRES 2 A 291 LEU CYS ARG THR SER HIS ARG PRO CYS ARG VAL GLY TYR SEQRES 3 A 291 ILE GLU LEU ASP LEU ASN SER GLY LYS ILE LEU GLU SER SEQRES 4 A 291 PHE ARG PRO GLU GLU ARG PHE PRO MET MET SER THR PHE SEQRES 5 A 291 LYS VAL LEU LEU CYS GLY ALA VAL LEU SER ARG ILE ASP SEQRES 6 A 291 ALA GLY GLN GLU GLN LEU GLY ARG ARG ILE HIS TYR SER SEQRES 7 A 291 GLN ASN ASP LEU VAL LYS TYR SER PRO VAL THR GLU LYS SEQRES 8 A 291 HIS LEU THR ASP GLY MET THR VAL ARG GLU LEU CYS SER SEQRES 9 A 291 ALA ALA ILE THR MET SER ASP ASN THR ALA ALA ASN LEU SEQRES 10 A 291 LEU LEU THR THR ILE GLY GLY PRO LYS GLU LEU THR ALA SEQRES 11 A 291 PHE LEU HIS ASN MET GLY ASP HIS VAL THR ARG LEU ASP SEQRES 12 A 291 ARG TRP GLU PRO GLU LEU ASN GLU ALA ILE PRO ASN ASP SEQRES 13 A 291 GLU ARG ASP THR THR MET PRO VAL ALA MET ALA THR THR SEQRES 14 A 291 LEU ARG LYS LEU LEU THR GLY GLU LEU LEU THR LEU ALA SEQRES 15 A 291 SER ARG GLN GLN LEU ILE ASP TRP MET GLU ALA ASP LYS SEQRES 16 A 291 VAL ALA GLY PRO LEU LEU ARG SER ALA LEU PRO ALA GLY SEQRES 17 A 291 TRP PHE ILE ALA ASP LYS SER GLY ALA GLY ARG ARG GLY SEQRES 18 A 291 SER ARG GLY ILE ILE ALA ALA LEU GLY PRO ASP GLY LYS SEQRES 19 A 291 PRO SER ARG ILE VAL VAL ILE TYR THR THR GLY SER ARG SEQRES 20 A 291 LYS LYS THR ASP GLU ARG ASN ARG GLN ILE ALA GLU ILE SEQRES 21 A 291 GLY ALA SER LEU ILE LYS HIS TRP GLY LEU GLU GLN LYS SEQRES 22 A 291 LEU ILE SER GLU GLU ASP LEU ASN SER ALA VAL ASP HIS SEQRES 23 A 291 HIS HIS HIS HIS HIS HET ZN A1271 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *352(H2 O) HELIX 1 1 PRO A 1 ARG A 16 1 16 HELIX 2 2 THR A 51 ALA A 66 1 16 HELIX 3 3 SER A 78 LEU A 82 5 5 HELIX 4 4 VAL A 88 HIS A 92 5 5 HELIX 5 5 VAL A 99 MET A 109 1 11 HELIX 6 6 ASP A 111 GLY A 123 1 13 HELIX 7 7 GLY A 124 MET A 135 1 12 HELIX 8 8 PRO A 147 GLU A 151 5 5 HELIX 9 9 MET A 162 GLY A 176 1 15 HELIX 10 10 THR A 180 ALA A 193 1 14 HELIX 11 11 LEU A 200 LEU A 205 5 6 HELIX 12 12 LYS A 249 HIS A 267 1 19 SHEET 1 AA 5 ILE A 36 PHE A 40 0 SHEET 2 AA 5 ARG A 23 ASP A 30 -1 O TYR A 26 N PHE A 40 SHEET 3 AA 5 ARG A 237 THR A 244 -1 O ILE A 238 N LEU A 29 SHEET 4 AA 5 ARG A 223 GLY A 230 -1 O ARG A 223 N THR A 243 SHEET 5 AA 5 PHE A 210 ALA A 217 -1 O PHE A 210 N GLY A 230 SHEET 1 AB 2 PHE A 46 PRO A 47 0 SHEET 2 AB 2 THR A 160 THR A 161 -1 O THR A 161 N PHE A 46 SHEET 1 AC 2 ARG A 74 ILE A 75 0 SHEET 2 AC 2 MET A 97 THR A 98 -1 O MET A 97 N ILE A 75 SSBOND 1 CYS A 15 CYS A 22 1555 1555 2.04 SSBOND 2 CYS A 57 CYS A 103 1555 1555 2.12 LINK OE1 GLU A 90 ZN ZN A1271 3545 1555 1.93 LINK ND1 HIS A 133 ZN ZN A1271 1555 1555 2.03 LINK ND1 HIS A 138 ZN ZN A1271 1555 1555 2.10 LINK ZN ZN A1271 O HOH A2352 1555 1555 2.23 CISPEP 1 GLU A 146 PRO A 147 0 1.68 SITE 1 AC1 4 GLU A 90 HIS A 133 HIS A 138 HOH A2352 CRYST1 47.113 70.609 78.313 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012769 0.00000